ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast73d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
2dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
3dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
4dbj|AK073960.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
5gb|AY492248.1| Corynebacterium confusum strain CIP 105403 RpoB (... 44 0.44
6dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.7
7dbj|AP006709.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.7
8gb|AY389685.1| Hyacinthus orientalis molecular chaperone BiP mRN... 40 6.9
9ref|NM_031895.4| Homo sapiens calcium channel, voltage-dependent... 40 6.9
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.9
11gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
12emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete ch... 40 6.9
13emb|AL355538.13| Human DNA sequence from clone RP4-787H6 on chro... 40 6.9
14gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
15emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 40 6.9
16gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, c... 40 6.9
17gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 40 6.9
18gb|AC024375.13| Homo sapiens chromosome 15, clone RP11-572A8, co... 40 6.9
19gb|AC008440.9| Homo sapiens chromosome 19 clone CTC-331H23, comp... 40 6.9
20gb|AC093014.11| Homo sapiens 12 BAC RP11-734E19 (Roswell Park Ca... 40 6.9
21gb|AC163764.4| Pan troglodytes BAC clone CH251-169M18 from chrom... 40 6.9
22gb|AF361354.1|AF361354 Homo sapiens voltage-dependent calcium ch... 40 6.9
23dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
27gb|AF288388.1|AF288388 Homo sapiens calcium channel gamma subuni... 40 6.9
28gb|AC005098.2|AC005098 Homo sapiens BAC clone CTA-350L10 from 7q... 40 6.9
29gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.9
30dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
31dbj|AK120512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
32gb|AC004919.1|AC004919 Homo sapiens PAC clone RP5-895B23 from UL... 40 6.9
33dbj|AK067646.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
34dbj|AK058471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
35gb|AY104316.1| Zea mays PCO066214 mRNA sequence 40 6.9
36gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
37gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
38emb|AL831809.3|CNS08CAM Oryza sativa chromosome 12, . BAC OJ1268... 40 6.9
39dbj|AP006736.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 6.9
40dbj|AB040471.1| Nicotiana tabacum mRNA for bZIP transcriptional ... 40 6.9 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  234 bits (118), Expect = 2e-58
 Identities = 171/186 (91%), Gaps = 2/186 (1%)
 Strand = Plus / Minus

                                                                            
Query: 321      ggcggcggccgagatgatccggttgcagacgtacgccgcgttcagcctgctggcgacggt 380
                ||||||||| |||||||| ||| ||||||||||||| |||||||||||| ||||||||| 
Sbjct: 11085168 ggcggcggcggagatgattcggctgcagacgtacgcggcgttcagcctgatggcgacggc 11085109

                                                                            
Query: 381      aacgtcggtgtactatgcgttcagcagcagggaacagttctacccggcgatggtctacct 440
                 ||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 11085108 gacggcggtgtactacgcgttcagcagcagggagcagttctacccggcgatggtgtacct 11085049

                                                                            
Query: 441      ctccacctccaagatatgcttcgtgctgctcctc-acacgggcctcgtcgcc-tgtgcct 498
                ||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 11085048 ctccacctccaagatctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgt 11084989

                      
Query: 499      cgcctg 504
                ||||||
Sbjct: 11084988 cgcctg 11084983
to top
>dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0501G08
          Length = 173505

 Score =  234 bits (118), Expect = 2e-58
 Identities = 171/186 (91%), Gaps = 2/186 (1%)
 Strand = Plus / Minus

                                                                          
Query: 321    ggcggcggccgagatgatccggttgcagacgtacgccgcgttcagcctgctggcgacggt 380
              ||||||||| |||||||| ||| ||||||||||||| |||||||||||| ||||||||| 
Sbjct: 169250 ggcggcggcggagatgattcggctgcagacgtacgcggcgttcagcctgatggcgacggc 169191

                                                                          
Query: 381    aacgtcggtgtactatgcgttcagcagcagggaacagttctacccggcgatggtctacct 440
               ||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 169190 gacggcggtgtactacgcgttcagcagcagggagcagttctacccggcgatggtgtacct 169131

                                                                          
Query: 441    ctccacctccaagatatgcttcgtgctgctcctc-acacgggcctcgtcgcc-tgtgcct 498
              ||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 169130 ctccacctccaagatctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgt 169071

                    
Query: 499    cgcctg 504
              ||||||
Sbjct: 169070 cgcctg 169065
to top
>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1217_C01
          Length = 100180

 Score =  234 bits (118), Expect = 2e-58
 Identities = 171/186 (91%), Gaps = 2/186 (1%)
 Strand = Plus / Minus

                                                                         
Query: 321   ggcggcggccgagatgatccggttgcagacgtacgccgcgttcagcctgctggcgacggt 380
             ||||||||| |||||||| ||| ||||||||||||| |||||||||||| ||||||||| 
Sbjct: 15074 ggcggcggcggagatgattcggctgcagacgtacgcggcgttcagcctgatggcgacggc 15015

                                                                         
Query: 381   aacgtcggtgtactatgcgttcagcagcagggaacagttctacccggcgatggtctacct 440
              ||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 15014 gacggcggtgtactacgcgttcagcagcagggagcagttctacccggcgatggtgtacct 14955

                                                                         
Query: 441   ctccacctccaagatatgcttcgtgctgctcctc-acacgggcctcgtcgcc-tgtgcct 498
             ||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 14954 ctccacctccaagatctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgt 14895

                   
Query: 499   cgcctg 504
             ||||||
Sbjct: 14894 cgcctg 14889
to top
>dbj|AK073960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072K04, full
           insert sequence
          Length = 2133

 Score =  234 bits (118), Expect = 2e-58
 Identities = 171/186 (91%), Gaps = 2/186 (1%)
 Strand = Plus / Plus

                                                                       
Query: 321 ggcggcggccgagatgatccggttgcagacgtacgccgcgttcagcctgctggcgacggt 380
           ||||||||| |||||||| ||| ||||||||||||| |||||||||||| ||||||||| 
Sbjct: 235 ggcggcggcggagatgattcggctgcagacgtacgcggcgttcagcctgatggcgacggc 294

                                                                       
Query: 381 aacgtcggtgtactatgcgttcagcagcagggaacagttctacccggcgatggtctacct 440
            ||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 295 gacggcggtgtactacgcgttcagcagcagggagcagttctacccggcgatggtgtacct 354

                                                                       
Query: 441 ctccacctccaagatatgcttcgtgctgctcctc-acacgggcctcgtcgcc-tgtgcct 498
           ||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 355 ctccacctccaagatctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgt 414

                 
Query: 499 cgcctg 504
           ||||||
Sbjct: 415 cgcctg 420
to top
>gb|AY492248.1| Corynebacterium confusum strain CIP 105403 RpoB (rpoB) gene,
           partial cds
          Length = 3356

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 354 cgccgcgttcagcctgctggcg 375
           ||||||||||||||||||||||
Sbjct: 174 cgccgcgttcagcctgctggcg 153
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 323     cggcggccgagatgatccggt 343
               |||||||||||||||||||||
Sbjct: 7716631 cggcggccgagatgatccggt 7716651
to top
>dbj|AP006709.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT41D19, TM0592,
             complete sequence
          Length = 96561

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 415   cagttctacccggcgatggtctacctctccacctccaagat 455
             |||||||| ||||||||||| || ||||| || ||||||||
Sbjct: 13902 cagttctatccggcgatggtgtatctctcgacttccaagat 13942
to top
>gb|AY389685.1| Hyacinthus orientalis molecular chaperone BiP mRNA, partial cds
          Length = 656

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 328 gccgagatgatccggttgcagacg 351
           |||||||||||| |||||||||||
Sbjct: 344 gccgagatgatcgggttgcagacg 321
to top
>ref|NM_031895.4| Homo sapiens calcium channel, voltage-dependent, gamma subunit 8
            (CACNG8), mRNA
          Length = 1417

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   ctccgccgccgcccccggcg 115
            ||||||||||||||||||||
Sbjct: 1148 ctccgccgccgcccccggcg 1129
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 96       ctccgccgccgcccccggcg 115
                ||||||||||||||||||||
Sbjct: 10360158 ctccgccgccgcccccggcg 10360177
to top
>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0682E05, complete sequence
          Length = 162223

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 100   gccgccgcccccggcggtgctcag 123
             ||||||||| ||||||||||||||
Sbjct: 75190 gccgccgccgccggcggtgctcag 75167
to top
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12
          Length = 333800

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 320    gggcggcggccgagatgatccggt 343
              ||||||| ||||||||||||||||
Sbjct: 190496 gggcggctgccgagatgatccggt 190519
to top
>emb|AL355538.13| Human DNA sequence from clone RP4-787H6 on chromosome 1, complete
             sequence
          Length = 127051

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     atgctatctcccctcctagagttt 24
             ||||||||| ||||||||||||||
Sbjct: 26256 atgctatctgccctcctagagttt 26279
to top
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    ctccgccgccgcccccggcg 115
             ||||||||||||||||||||
Sbjct: 16711 ctccgccgccgcccccggcg 16730
to top
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    tcgccgtgaacgccagcagg 195
              ||||||||||||||||||||
Sbjct: 118356 tcgccgtgaacgccagcagg 118375
to top
>gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, complete sequence
          Length = 171605

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     tcccctcctagagtttctcc 28
             ||||||||||||||||||||
Sbjct: 51098 tcccctcctagagtttctcc 51079
to top
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone
             OSJNBb0036D03, from chromosome 3, complete sequence
          Length = 125800

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    ctccgccgccgcccccggcg 115
             ||||||||||||||||||||
Sbjct: 73624 ctccgccgccgcccccggcg 73643
to top
>gb|AC024375.13| Homo sapiens chromosome 15, clone RP11-572A8, complete sequence
          Length = 163775

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      tcccctcctagagtttctcc 28
              ||||||||||||||||||||
Sbjct: 163485 tcccctcctagagtttctcc 163466
to top
>gb|AC008440.9| Homo sapiens chromosome 19 clone CTC-331H23, complete sequence
          Length = 169997

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     ctccgccgccgcccccggcg 115
              ||||||||||||||||||||
Sbjct: 126980 ctccgccgccgcccccggcg 126961
to top
>gb|AC093014.11| Homo sapiens 12 BAC RP11-734E19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 97495

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   tcgccgagggcggcggccga 332
             ||||||||||||||||||||
Sbjct: 74877 tcgccgagggcggcggccga 74858
to top
>gb|AC163764.4| Pan troglodytes BAC clone CH251-169M18 from chromosome unknown,
             complete sequence
          Length = 195947

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ctccgccgccgcccccggcg 115
             ||||||||||||||||||||
Sbjct: 19245 ctccgccgccgcccccggcg 19226
to top
>gb|AF361354.1|AF361354 Homo sapiens voltage-dependent calcium channel gamma-8 subunit
            (CACNG8) mRNA, complete cds
          Length = 1386

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   ctccgccgccgcccccggcg 115
            ||||||||||||||||||||
Sbjct: 1153 ctccgccgccgcccccggcg 1134
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 95       actccgccgccgcccccggcggtg 118
                |||||||||||||| |||||||||
Sbjct: 27233541 actccgccgccgccgccggcggtg 27233518
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 100      gccgccgcccccggcggtgctcag 123
                ||||||||| ||||||||||||||
Sbjct: 25585143 gccgccgccgccggcggtgctcag 25585120
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 451     aagatatgcttcgtgctgct 470
               ||||||||||||||||||||
Sbjct: 6262347 aagatatgcttcgtgctgct 6262328
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 96       ctccgccgccgcccccggcg 115
                ||||||||||||||||||||
Sbjct: 10358259 ctccgccgccgcccccggcg 10358278
to top
>gb|AF288388.1|AF288388 Homo sapiens calcium channel gamma subunit 8 (CACNG8) mRNA, partial
            cds
          Length = 1281

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   ctccgccgccgcccccggcg 115
            ||||||||||||||||||||
Sbjct: 1012 ctccgccgccgcccccggcg 993
to top
>gb|AC005098.2|AC005098 Homo sapiens BAC clone CTA-350L10 from 7q11.2, complete sequence
          Length = 230552

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    gccgagggcggcggccgaga 334
              ||||||||||||||||||||
Sbjct: 126494 gccgagggcggcggccgaga 126513
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      ctccgccgccgcccccggcg 115
               ||||||||||||||||||||
Sbjct: 4750833 ctccgccgccgcccccggcg 4750814
to top
>dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1116_C08
          Length = 102317

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   aagatatgcttcgtgctgct 470
             ||||||||||||||||||||
Sbjct: 12907 aagatatgcttcgtgctgct 12888
to top
>dbj|AK120512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123O09, full
            insert sequence
          Length = 3827

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  aagatatgcttcgtgctgct 470
            ||||||||||||||||||||
Sbjct: 1041 aagatatgcttcgtgctgct 1060
to top
>gb|AC004919.1|AC004919 Homo sapiens PAC clone RP5-895B23 from UL, complete sequence
          Length = 75547

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1    atgctatctcccctcctagagttt 24
            ||||||||| ||||||||||||||
Sbjct: 2748 atgctatctgccctcctagagttt 2771
to top
>dbj|AK067646.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112D16, full
           insert sequence
          Length = 2890

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  ctccgccgccgcccccggcg 115
           ||||||||||||||||||||
Sbjct: 141 ctccgccgccgcccccggcg 160
to top
>dbj|AK058471.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B10, full
           insert sequence
          Length = 1364

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  ctccgccgccgcccccggcg 115
           ||||||||||||||||||||
Sbjct: 144 ctccgccgccgcccccggcg 163
to top
>gb|AY104316.1| Zea mays PCO066214 mRNA sequence
          Length = 1552

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 167 gccgcaaaatcgccgtgaacgccagcaggagc 198
           ||||||||||||||||  ||||||||| ||||
Sbjct: 172 gccgcaaaatcgccgtcgacgccagcatgagc 203
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 100      gccgccgcccccggcggtgctcag 123
                ||||||||| ||||||||||||||
Sbjct: 25903813 gccgccgccgccggcggtgctcag 25903790
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 95       actccgccgccgcccccggcggtg 118
                |||||||||||||| |||||||||
Sbjct: 27159141 actccgccgccgccgccggcggtg 27159118
to top
>emb|AL831809.3|CNS08CAM Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146585

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    actccgccgccgcccccggcggtg 118
             |||||||||||||| |||||||||
Sbjct: 46573 actccgccgccgccgccggcggtg 46550
to top
>dbj|AP006736.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45I15, TM1494,
             complete sequence
          Length = 114162

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   atcctcgtatcggtgatcta 268
             ||||||||||||||||||||
Sbjct: 30134 atcctcgtatcggtgatcta 30153
to top
>dbj|AB040471.1| Nicotiana tabacum mRNA for bZIP transcriptional activator RSG,
           complete cds
          Length = 1362

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  ctccgccgccgcccccggcg 115
           ||||||||||||||||||||
Sbjct: 518 ctccgccgccgcccccggcg 499


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,127,311
Number of Sequences: 3902068
Number of extensions: 3127311
Number of successful extensions: 62847
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62124
Number of HSP's gapped (non-prelim): 719
length of query: 506
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 484
effective length of database: 17,147,199,772
effective search space: 8299244689648
effective search space used: 8299244689648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top