No.
Definition
Score (bits)
E Value
1 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
143
6e-31
2 dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic D...
143
6e-31
3 dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic D...
143
6e-31
4 gb|AY220652.1| Oryza sativa box C/D snoRNA J24.1, complete sequence
90
8e-15
5 gb|AY220653.1| Oryza sativa box C/D snoRNA J24.2, complete sequence
82
2e-12
6 dbj|AP006584.3| Oryza sativa (japonica cultivar-group) genomic D...
70
7e-09
7 dbj|AP005659.2| Oryza sativa (japonica cultivar-group) genomic D...
70
7e-09
8 dbj|AK071127.1| Oryza sativa (japonica cultivar-group) cDNA clon...
60
7e-06
9 gb|AY107053.1| Zea mays PCO082530 mRNA sequence
56
1e-04
10 dbj|AK106250.1| Oryza sativa (japonica cultivar-group) cDNA clon...
50
0.007
11 dbj|AB227238.1| Aspergillus oryzae cDNA, contig sequence: AoEST4102
46
0.10
12 dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
46
0.10
13 gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
44
0.40
14 ref|NM_165696.1| Drosophila melanogaster CG1648-RB, transcript v...
44
0.40
15 ref|NM_136674.2| Drosophila melanogaster CG1648-RA, transcript v...
44
0.40
16 gb|AC007330.6|AC007330 Drosophila melanogaster, chromosome 2R, r...
44
0.40
17 dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...
44
0.40
18 dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete...
44
0.40
19 gb|AF440828.1| Streptomyces avermitilis Imp1 (imp1) gene, partia...
44
0.40
20 gb|AY060755.1| Drosophila melanogaster GH20817 full insert cDNA
44
0.40
21 gb|AE003832.4| Drosophila melanogaster chromosome 2R, section 18...
44
0.40
22 gb|BT001839.1| Drosophila melanogaster RH51979 full insert cDNA
44
0.40
23 gb|AC160245.2| Culex pipiens quinquefasciatus, clone Culex pipie...
42
1.6
24 gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co...
42
1.6
25 emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos...
42
1.6
26 gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp...
42
1.6
27 dbj|AB010439.1| Rhodococcus rhodochrous gene for steroid monooxy...
42
1.6
28 ref|XM_960330.1| Neurospora crassa OR74A hypothetical protein (N...
40
6.3
29 ref|XM_331848.1| Neurospora crassa OR74A hypothetical protein (N...
40
6.3
30 gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete...
40
6.3
31 gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
40
6.3
32 gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
40
6.3
33 gb|CP000249.1| Frankia sp. CcI3, complete genome
40
6.3
34 gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...
40
6.3
35 dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
40
6.3
36 ref|NM_209141.1| Eremothecium gossypii ADL308Cp (ADL308C), mRNA
40
6.3
37 gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par...
40
6.3
38 gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge...
40
6.3
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 143 bits (72), Expect = 6e-31
Identities = 272/338 (80%), Gaps = 3/338 (0%)
Strand = Plus / Plus
Query: 114 ccgcacctcgtcttcatcccgagcgccggcatgggccacctgctccccttctcccgcttc 173
|||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct: 10492354 ccgcacgtcgtcttcatcccgagcgccggcatgggccacctcctcccgttcttccgcttc 10492413
Query: 174 atcggcgccctcgccagcgagggcgtcttcgacatctccgtcgtcaccgccctcccgacg 233
|||||||| || || | | | ||| |||||||||||||||||||| |||||| ||
Sbjct: 10492414 atcggcgcgctgtcctcccacgacgt---cgacatctccgtcgtcaccgtcctccccacc 10492470
Query: 234 gtctcggaggccgaggccgagcagttggccgccctcttcgcctccttccccgccatccgg 293
|| |||| ||||||||||| || || ||| ||||||| | ||||||| ||||||
Sbjct: 10492471 gtgtcggccgccgaggccgaccacttcgcccgcctcttccacgacttccccagcatccgc 10492530
Query: 294 cgcatcgacttcaacctcctgccgctcgacgacgccacccttgccggcacggatcccttc 353
||| ||||||||||||| ||||||||||||| | || | ||||| | || || |||
Sbjct: 10492531 cgcgtcgacttcaacctgctgccgctcgacgcctccgagttccccggcgccgacccgttc 10492590
Query: 354 ctcctgcgatgggagtccctgcgccgctccgctcatctcctcgggccgctcatcgccggc 413
|| || || |||||| |||||||||||||| || ||||||| ||| ||||||||||
Sbjct: 10492591 ctgctccggtgggaggccctgcgccgctccatgcacctcctcgccccggccatcgccggc 10492650
Query: 414 gccacgccacgcgcgtcggccatcgtcaccgacgtcac 451
| | | || ||||| ||||| ||||||||||||||||
Sbjct: 10492651 gtcgccccgcgcgccacggccgtcgtcaccgacgtcac 10492688
Score = 89.7 bits (45), Expect = 8e-15
Identities = 131/159 (82%), Gaps = 3/159 (1%)
Strand = Plus / Minus
Query: 114 ccgcacctcgtcttcatcccgagcgccggcatgggccacctgctccccttctcccgcttc 173
|||||| |||| ||| ||||||||||||||||||||||||| |||| |||| |||||||
Sbjct: 10432574 ccgcacgtcgtgttcgtcccgagcgccggcatgggccacctcctccagttcttccgcttc 10432515
Query: 174 atcggcgccctcgccagcgagggcgtcttcgacatctccgtcgtcaccgccctcccgacg 233
|||||||| || || | | | ||| |||||||||||||||||||| | |||||||
Sbjct: 10432514 atcggcgcgctgtccgcccacgacgt---cgacatctccgtcgtcaccgtcttcccgacc 10432458
Query: 234 gtctcggaggccgaggccgagcagttggccgccctcttc 272
|| || | ||||||||||| || || ||||||||||||
Sbjct: 10432457 gtgtccgccgccgaggccgaccacttcgccgccctcttc 10432419
Score = 69.9 bits (35), Expect = 7e-09
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 122 cgtcttcatcccgagcgccggcatgggccacctgctccc 160
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 10331206 cgtcctcatcccgagcgccggcatgggccacctgctccc 10331168
Score = 65.9 bits (33), Expect = 1e-07
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 363 tgggagtccctgcgccgctccgctcatctcctcgggccgctcatcgccggcgccacgcca 422
|||||| |||||||||||||| || |||||||| ||| |||||||||||| ||| ||
Sbjct: 10432328 tgggaggccctgcgccgctccttgcacctcctcggcccggtcatcgccggcgtcaccccg 10432269
Query: 423 cgcgcgtcggccatcgtcaccgacgtcac 451
|||| |||||| |||||||||||||||
Sbjct: 10432268 cgcgtcacggccaccgtcaccgacgtcac 10432240
Score = 60.0 bits (30), Expect = 7e-06
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 127 tcatcccgagcgccggcatgggccacctgctccccttc 164
|||||||||||||||||||||||||||| ||||||||
Sbjct: 10323059 tcatcccgagcgccggcatgggccacctcgtccccttc 10323096
Score = 50.1 bits (25), Expect = 0.007
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 114 ccgcacctcgtcttcatcccgagcgccggcatgggccacctgctccccttctcccgc 170
|||||| ||||| || | || ||||||||||||||||||||| | |||||| |||||
Sbjct: 10397101 ccgcacgtcgtcctcctaccaagcgccggcatgggccacctggttcccttcacccgc 10397157
>dbj|AP006860.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:B1026E06
Length = 162784
Score = 143 bits (72), Expect = 6e-31
Identities = 272/338 (80%), Gaps = 3/338 (0%)
Strand = Plus / Plus
Query: 114 ccgcacctcgtcttcatcccgagcgccggcatgggccacctgctccccttctcccgcttc 173
|||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct: 68968 ccgcacgtcgtcttcatcccgagcgccggcatgggccacctcctcccgttcttccgcttc 69027
Query: 174 atcggcgccctcgccagcgagggcgtcttcgacatctccgtcgtcaccgccctcccgacg 233
|||||||| || || | | | ||| |||||||||||||||||||| |||||| ||
Sbjct: 69028 atcggcgcgctgtcctcccacgacgt---cgacatctccgtcgtcaccgtcctccccacc 69084
Query: 234 gtctcggaggccgaggccgagcagttggccgccctcttcgcctccttccccgccatccgg 293
|| |||| ||||||||||| || || ||| ||||||| | ||||||| ||||||
Sbjct: 69085 gtgtcggccgccgaggccgaccacttcgcccgcctcttccacgacttccccagcatccgc 69144
Query: 294 cgcatcgacttcaacctcctgccgctcgacgacgccacccttgccggcacggatcccttc 353
||| ||||||||||||| ||||||||||||| | || | ||||| | || || |||
Sbjct: 69145 cgcgtcgacttcaacctgctgccgctcgacgcctccgagttccccggcgccgacccgttc 69204
Query: 354 ctcctgcgatgggagtccctgcgccgctccgctcatctcctcgggccgctcatcgccggc 413
|| || || |||||| |||||||||||||| || ||||||| ||| ||||||||||
Sbjct: 69205 ctgctccggtgggaggccctgcgccgctccatgcacctcctcgccccggccatcgccggc 69264
Query: 414 gccacgccacgcgcgtcggccatcgtcaccgacgtcac 451
| | | || ||||| ||||| ||||||||||||||||
Sbjct: 69265 gtcgccccgcgcgccacggccgtcgtcaccgacgtcac 69302
Score = 89.7 bits (45), Expect = 8e-15
Identities = 131/159 (82%), Gaps = 3/159 (1%)
Strand = Plus / Minus
Query: 114 ccgcacctcgtcttcatcccgagcgccggcatgggccacctgctccccttctcccgcttc 173
|||||| |||| ||| ||||||||||||||||||||||||| |||| |||| |||||||
Sbjct: 9188 ccgcacgtcgtgttcgtcccgagcgccggcatgggccacctcctccagttcttccgcttc 9129
Query: 174 atcggcgccctcgccagcgagggcgtcttcgacatctccgtcgtcaccgccctcccgacg 233
|||||||| || || | | | ||| |||||||||||||||||||| | |||||||
Sbjct: 9128 atcggcgcgctgtccgcccacgacgt---cgacatctccgtcgtcaccgtcttcccgacc 9072
Query: 234 gtctcggaggccgaggccgagcagttggccgccctcttc 272
|| || | ||||||||||| || || ||||||||||||
Sbjct: 9071 gtgtccgccgccgaggccgaccacttcgccgccctcttc 9033
Score = 65.9 bits (33), Expect = 1e-07
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 363 tgggagtccctgcgccgctccgctcatctcctcgggccgctcatcgccggcgccacgcca 422
|||||| |||||||||||||| || |||||||| ||| |||||||||||| ||| ||
Sbjct: 8942 tgggaggccctgcgccgctccttgcacctcctcggcccggtcatcgccggcgtcaccccg 8883
Query: 423 cgcgcgtcggccatcgtcaccgacgtcac 451
|||| |||||| |||||||||||||||
Sbjct: 8882 cgcgtcacggccaccgtcaccgacgtcac 8854
>gb|AF466200.2 | Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2,
fertilization-independent endosperm proteins, hypothetical
protein, putative non-LTR retroelement reverse
transcriptase, OCL5 protein, tryptophan synthase
beta-subunit, hypothetical proteins, putative AP
endonuclease, putative RNA polymerase II complex component
SRB7, putative beta-1,3-glucanase, hypothetical protein,
TNP2-like protein, hypothetical protein, putative
phosphate/phosphoenolpyruvate translocator, putative
protein, hypothetical proteins, putative
galactosyltransferase family, hypothetical protein,
putative cytochrome P450 family, putative lipid transfer
protein, putative photoreceptor-interacting protein, and
hypothetical protein genes, complete cds; and hypothetical
protein gene, partial cds
Length = 202197
Score = 40.1 bits (20), Expect = 6.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 398 gccgctcatcgccggcgccacgccacgc 425
||||||| |||||| |||||||||||||
Sbjct: 178871 gccgctcgtcgccgtcgccacgccacgc 178898
>gb|AE016825.1 | Chromobacterium violaceum ATCC 12472, complete genome
Length = 4751080
Score = 40.1 bits (20), Expect = 6.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 240 gaggccgaggccgagcagtt 259
||||||||||||||||||||
Sbjct: 2096583 gaggccgaggccgagcagtt 2096602
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,028,262
Number of Sequences: 3902068
Number of extensions: 3028262
Number of successful extensions: 67089
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65524
Number of HSP's gapped (non-prelim): 1558
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)