ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast73b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZAN_MOUSE (O88799) Zonadhesin precursor 29 2.4
2CEG1A_DROME (Q9NGC3) Centaurin-gamma 1A 27 9.2

>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 108  GHCRGGSKKMPGAS*S*CYCDP 43
            GHC G S K P A    C C+P
Sbjct: 2842 GHCEGSSTKAPSACKEGCVCEP 2863



 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 114  SGGHCRGGSKKMPGAS*S*CYCDP 43
            S GHC G + K P A    C C+P
Sbjct: 2960 SEGHCEGSTTKAPSACQEGCVCEP 2983



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 108  GHCRGGSKKMPGAS*S*CYCDP 43
            GHC G + K P A    C C+P
Sbjct: 2602 GHCGGSTTKAPSACQEGCVCEP 2623



to top

>CEG1A_DROME (Q9NGC3) Centaurin-gamma 1A|
          Length = 995

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 4   PHTLSSDQPQAHNRVTVALASASSGHFLASTTAMATADV 120
           PH      PQ HN      A+++SG   +S +A A+A +
Sbjct: 28  PHQNQLPPPQRHNHAAPTAAASASGAPSSSASASASASI 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.113    0.305 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,951,789
Number of Sequences: 219361
Number of extensions: 254066
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
to top