>NUSB_BIFLO (Q8G817) N utilization substance protein B homolog (Protein nusB)|
          Length = 190

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +2

Query: 167 CDADRDMFFD---TPLLDLSGCSVTPASIAAAQINGSRVSAAPAAKPTDRGMFFQAPLLD 337
           CD D   F     + +      +  P S+A      S  SAA A++PTD G    +P  D
Sbjct: 113 CDDDSPAFIHGLLSAVCTAKNAAPAPESVAEEADEESSDSAAAASEPTDEGDVSDSP--D 170

Query: 338 LSGCGVTPASIAA 376
            SG    PA+ +A
Sbjct: 171 SSGASDEPAAPSA 183

>PPE45_MYCTU (P0A694) Hypothetical PPE-family protein PPE45|
          Length = 408

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 396 LEPLICAAAMEAGVTPHPLKSRSGAWKNMPLSVGLAAG 283
           L P I +  M AG    P+ + + AW ++   +GLAAG
Sbjct: 6   LPPEINSGRMYAGPGSGPMMAAAAAWDSLAAELGLAAG 43

>PPE45_MYCBO (P0A695) Hypothetical PPE-family protein PPE45|
          Length = 408

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 396 LEPLICAAAMEAGVTPHPLKSRSGAWKNMPLSVGLAAG 283
           L P I +  M AG    P+ + + AW ++   +GLAAG
Sbjct: 6   LPPEINSGRMYAGPGSGPMMAAAAAWDSLAAELGLAAG 43

>H1A_XENLA (P06892) Histone H1A|
          Length = 209

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 378 AAAMEAGVTPHPLKSRSGAWKNMPLSVGLAAGAAETLEPLICAAAMEAGVT-LHPLKSRS 202
           A A E+   P P +  +   K  P     A GAA++ +P    +  E  VT +   K RS
Sbjct: 1   AEAAESAPAPPPAEPAAKKKKQQPKKAAAARGAAKSKKPSSGPSVSEQIVTAVSASKERS 60

Query: 201 GVS 193
           GVS
Sbjct: 61  GVS 63

>ENO_BRUSU (Q8G0G3) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 425

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 137 NGKVVAPADNCDADRDMFFDTPLLDLSGCSVTPASIAAAQINGSRVSAAPAA 292
           NGK+       DA+  +  D  L+DL G S    ++ A  I G  ++ A AA
Sbjct: 71  NGKIFDAIAGMDAESQLLIDQTLIDLDG-SANKGNLGANAILGVSLAVAKAA 121

>ENO_BRUME (Q8YHF0) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 425

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 137 NGKVVAPADNCDADRDMFFDTPLLDLSGCSVTPASIAAAQINGSRVSAAPAA 292
           NGK+       DA+  +  D  L+DL G S    ++ A  I G  ++ A AA
Sbjct: 71  NGKIFDAIAGMDAESQLLIDQTLIDLDG-SANKGNLGANAILGVSLAVAKAA 121

>FOSL2_RAT (P51145) Fos-related antigen 2|
          Length = 327

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 331 ERRLEEHAPVCRLGRRSCRNSRAVDLRGGDGGGSDAAPTQIQERRIEEHVP 179
           E  L  H PVC++     R+S    ++   G GS   P  +++   EE  P
Sbjct: 182 EFMLVAHGPVCKISPEERRSSPTSGVQSLRGTGSAVGPVVVKQEPPEEDSP 232

>Y4995_PSEPK (Q88D33) UPF0301 protein PP4995|
          Length = 189

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -3

Query: 375 AAMEAGVTPHPLKSRSGAWKNMPLSVGLAAGAAETLEPLICAAAMEAGVTLHPLKSRSG 199
           A  EAG     L     AW N P    +  G A  L   + AAA   G+ LH L S++G
Sbjct: 133 AGWEAGQLEAELADN--AWLNCPFDPEIVFGMASDLR--LEAAAASLGINLHLLTSQAG 187

>SYFB_NEIMB (Q9K089) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 787

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 212 LSGCSVTPASIAAAQINGSRVSAAPAAKPTDRGMFFQAPLLDLSGCGVTP 361
           L+GC+     I  A I GSR        P D G F    + +++    TP
Sbjct: 183 LTGCAFRQPEIHTAPITGSRKQPVQINAPADCGRFISRVIENVNARATTP 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,951,823
Number of Sequences: 219361
Number of extensions: 779875
Number of successful extensions: 3269
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3264
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)