ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast73b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 46 0.097
2emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 46 0.097
3gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 44 0.38
4dbj|AB223714.1| Aspergillus oryzae cDNA, contig sequence: AoEST0554 44 0.38
5dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 44 0.38
6ref|XM_472445.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
7gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, com... 42 1.5
8gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.5
9emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 42 1.5
10emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encepha... 42 1.5
11gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.5
12gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.5
13emb|BX323460.10| Zebrafish DNA sequence from clone DKEYP-47G11 i... 42 1.5
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|AK121255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
18gb|AC102364.5| Mus musculus chromosome 9, clone RP23-106P6, comp... 42 1.5
19gb|AF016399.1|AF016399 Leishmania tarentolae strain UC spliced-l... 42 1.5
20emb|AL606618.4|OSJN00062 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
21emb|AL928740.6| Zebrafish DNA sequence from clone CH211-129O13, ... 42 1.5
22gb|AC103936.9| Mus musculus chromosome 9, clone RP24-361K14, com... 42 1.5
23dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.5
24gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 6.0
25ref|XM_482561.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.0
26gb|AY463300.1| Uncultured proteobacterium clone FOR96 carbon mon... 40 6.0
27gb|AY463288.1| Uncultured proteobacterium clone FOR59 carbon mon... 40 6.0
28gb|BC059982.1| Xenopus laevis hypothetical protein MGC68668, mRN... 40 6.0
29ref|XM_811956.1| Trypanosoma cruzi strain CL Brener dispersed ge... 40 6.0
30emb|CR720352.2|CNS0GIRQ Tetraodon nigroviridis full-length cDNA 40 6.0
31ref|XM_848002.1| PREDICTED: Canis familiaris similar to retinobl... 40 6.0
32gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 6.0
33emb|AL669816.3| Mouse DNA sequence from clone RP23-266C4 on chro... 40 6.0
34dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 6.0
35gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.0
36dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
37dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
38dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
40gb|AY227810.1| Emericella nidulans snfA gene, partial sequence 40 6.0
41dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
42dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
43dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.0
44dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
45dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
46dbj|AB168094.1| Chlamydomonas reinhardtii LciC mRNA for low-CO2 ... 40 6.0
47dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
48dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
49dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
50dbj|AB112656.1| Oryza sativa (japonica cultivar-group) OsCAX1a m... 40 6.0
51dbj|AK120895.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
52dbj|AK120863.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
53dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
54emb|X97916.1|HVBLT141 H.vulgare blt14.1 gene 40 6.0
55dbj|AK109104.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
56dbj|AK100765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
57dbj|AK070338.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
58dbj|AK061122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
59gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
60emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058... 40 6.0
61gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.0
62gb|L28092.1|BLYTRAA Hordeum vulgare transmembrane protein mRNA f... 40 6.0
63dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynt... 40 6.0 
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 94      gatgccggtgccggtggtggcggcagc 120
               |||||||||| ||||||||||||||||
Sbjct: 3349553 gatgccggtggcggtggtggcggcagc 3349579
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 240     ccatcgccgccgcgcagatcaac 262
               |||||||||||||||||||||||
Sbjct: 1905448 ccatcgccgccgcgcagatcaac 1905470
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 96      tgccggtgccggtggtggcggc 117
               ||||||||||||||||||||||
Sbjct: 2238709 tgccggtgccggtggtggcggc 2238730
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>dbj|AB223714.1| Aspergillus oryzae cDNA, contig sequence: AoEST0554
          Length = 574

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 421 tcatcctcctcccccgccacct 442
           ||||||||||||||||||||||
Sbjct: 352 tcatcctcctcccccgccacct 373
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 421    tcatcctcctcccccgccacct 442
              ||||||||||||||||||||||
Sbjct: 423209 tcatcctcctcccccgccacct 423188
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>ref|XM_472445.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1356

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 424 tcctcctcccccgccacctcc 444
           |||||||||||||||||||||
Sbjct: 313 tcctcctcccccgccacctcc 333
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>gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, complete sequence
          Length = 220467

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 421   tcatcctcctcccccgccacc 441
             |||||||||||||||||||||
Sbjct: 62458 tcatcctcctcccccgccacc 62438
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 72      cgccgccgacgccgctgaagc 92
               |||||||||||||||||||||
Sbjct: 3163974 cgccgccgacgccgctgaagc 3163994
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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 96     tgccggtgccggtggtggcgg 116
              |||||||||||||||||||||
Sbjct: 128275 tgccggtgccggtggtggcgg 128255
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>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 267509

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 419   agtcatcctcctcccccgcca 439
             |||||||||||||||||||||
Sbjct: 84632 agtcatcctcctcccccgcca 84652
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 72      cgccgccgacgccgctgaagc 92
               |||||||||||||||||||||
Sbjct: 4108008 cgccgccgacgccgctgaagc 4107988
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 240     ccatcgccgccgcgcagatca 260
               |||||||||||||||||||||
Sbjct: 1724296 ccatcgccgccgcgcagatca 1724276
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>emb|BX323460.10| Zebrafish DNA sequence from clone DKEYP-47G11 in linkage group 3,
              complete sequence
          Length = 202017

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 165    actgtgatgcagacagggaca 185
              |||||||||||||||||||||
Sbjct: 169505 actgtgatgcagacagggaca 169525
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 424      tcctcctcccccgccacctcc 444
                |||||||||||||||||||||
Sbjct: 20700126 tcctcctcccccgccacctcc 20700146
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 100      ggtgccggtggtggcggcagc 120
                |||||||||||||||||||||
Sbjct: 19724873 ggtgccggtggtggcggcagc 19724853



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 234      ccgcctccatcgccgccgcgcaga 257
                ||||| ||||||||||||||||||
Sbjct: 28171103 ccgccgccatcgccgccgcgcaga 28171126
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>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0048D08
          Length = 145772

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   ggtgccggtggtggcggcagc 120
             |||||||||||||||||||||
Sbjct: 56879 ggtgccggtggtggcggcagc 56859
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>dbj|AK121255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102B22, full
           insert sequence
          Length = 1653

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 424 tcctcctcccccgccacctcc 444
           |||||||||||||||||||||
Sbjct: 369 tcctcctcccccgccacctcc 389
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>gb|AC102364.5| Mus musculus chromosome 9, clone RP23-106P6, complete sequence
          Length = 208404

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 297    ctacagacaggggcatgttct 317
              |||||||||||||||||||||
Sbjct: 141258 ctacagacaggggcatgttct 141278
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>gb|AF016399.1|AF016399 Leishmania tarentolae strain UC spliced-leader-associated RNA locus,
            small nucleolar RNA genes
          Length = 2724

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 235  cgcctccatcgccgccgcgca 255
            |||||||||||||||||||||
Sbjct: 2564 cgcctccatcgccgccgcgca 2544
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>emb|AL606618.4|OSJN00062 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0108J11,
             complete sequence
          Length = 124629

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 424   tcctcctcccccgccacctcc 444
             |||||||||||||||||||||
Sbjct: 46277 tcctcctcccccgccacctcc 46297
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>emb|AL928740.6| Zebrafish DNA sequence from clone CH211-129O13, complete sequence
          Length = 177281

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   actgtgatgcagacagggaca 185
             |||||||||||||||||||||
Sbjct: 16249 actgtgatgcagacagggaca 16229
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>gb|AC103936.9| Mus musculus chromosome 9, clone RP24-361K14, complete sequence
          Length = 184968

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 297  ctacagacaggggcatgttct 317
            |||||||||||||||||||||
Sbjct: 8784 ctacagacaggggcatgttct 8804
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>dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-402K1, complete
             sequence
          Length = 187735

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 424   tcctcctcccccgccacctcc 444
             |||||||||||||||||||||
Sbjct: 68170 tcctcctcccccgccacctcc 68150
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 84      cgctgaagcagatgccggtgccgg 107
               ||||| ||||||||||||||||||
Sbjct: 2370407 cgctgcagcagatgccggtgccgg 2370384
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>ref|XM_482561.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1675

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 360 ccgcctccattgccgccgcg 379
           ||||||||||||||||||||
Sbjct: 573 ccgcctccattgccgccgcg 554
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>gb|AY463300.1| Uncultured proteobacterium clone FOR96 carbon monoxide
           dehydrogenase form I large subunit (coxL) gene, partial
           cds
          Length = 466

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  gcagatgccggtgccggtgg 110
           ||||||||||||||||||||
Sbjct: 414 gcagatgccggtgccggtgg 395
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>gb|AY463288.1| Uncultured proteobacterium clone FOR59 carbon monoxide
           dehydrogenase form I large subunit (coxL) gene, partial
           cds
          Length = 466

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  gcagatgccggtgccggtgg 110
           ||||||||||||||||||||
Sbjct: 414 gcagatgccggtgccggtgg 395
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>gb|BC059982.1| Xenopus laevis hypothetical protein MGC68668, mRNA (cDNA clone
           MGC:68668 IMAGE:4032881), complete cds
          Length = 3359

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 421 tcatcctcctcccccgccacctcc 444
           |||||||||||| |||||||||||
Sbjct: 27  tcatcctcctccgccgccacctcc 50
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>ref|XM_811956.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053510175.60) partial mRNA
          Length = 10395

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   gccggtgccggtggtggcgg 116
            ||||||||||||||||||||
Sbjct: 1294 gccggtgccggtggtggcgg 1313
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>emb|CR720352.2|CNS0GIRQ Tetraodon nigroviridis full-length cDNA
          Length = 437

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 427 tcctcccccgccacctccac 446
           ||||||||||||||||||||
Sbjct: 384 tcctcccccgccacctccac 365
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>ref|XM_848002.1| PREDICTED: Canis familiaris similar to retinoblastoma-associated
            factor 600, transcript variant 2 (LOC478211), mRNA
          Length = 15938

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 425  cctcctcccccgccacctcc 444
            ||||||||||||||||||||
Sbjct: 1898 cctcctcccccgccacctcc 1917
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      gatgccggtgccggtggtgg 113
               ||||||||||||||||||||
Sbjct: 1893754 gatgccggtgccggtggtgg 1893773
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>emb|AL669816.3| Mouse DNA sequence from clone RP23-266C4 on chromosome 11 Contains the 3'
              end of a novel gene, complete sequence
          Length = 203827

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    caggggcatgttcttccagg 323
              ||||||||||||||||||||
Sbjct: 175085 caggggcatgttcttccagg 175066
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      gcgccgccgacgccgctgaa 90
               ||||||||||||||||||||
Sbjct: 1358983 gcgccgccgacgccgctgaa 1358964
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      tgccggtgccggtggtggcg 115
               ||||||||||||||||||||
Sbjct: 1096283 tgccggtgccggtggtggcg 1096264
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 72       cgccgccgacgccgctgaagcaga 95
                |||||||| |||||||||||||||
Sbjct: 24393786 cgccgccgtcgccgctgaagcaga 24393809
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 66       ctcctgcgccgccgacgccg 85
                ||||||||||||||||||||
Sbjct: 15935980 ctcctgcgccgccgacgccg 15935999
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 360      ccgcctccattgccgccgcg 379
                ||||||||||||||||||||
Sbjct: 21084008 ccgcctccattgccgccgcg 21084027



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 231      ctcccgcctccatcgccgcc 250
                ||||||||||||||||||||
Sbjct: 19388621 ctcccgcctccatcgccgcc 19388602
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 233      cccgcctccatcgccgccgc 252
                ||||||||||||||||||||
Sbjct: 21072611 cccgcctccatcgccgccgc 21072630
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>gb|AY227810.1| Emericella nidulans snfA gene, partial sequence
          Length = 5227

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 99  cggtgccggtggtggcggcagctc 122
           |||||||||||| |||||||||||
Sbjct: 841 cggtgccggtggaggcggcagctc 864
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>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1144D11
          Length = 157943

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   cccgcctccatcgccgccgc 252
             ||||||||||||||||||||
Sbjct: 40156 cccgcctccatcgccgccgc 40175
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>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1014_G12
          Length = 158830

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cccgcctccatcgccgccgc 252
              ||||||||||||||||||||
Sbjct: 135813 cccgcctccatcgccgccgc 135832
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      gatgccggtgccggtggtgg 113
               ||||||||||||||||||||
Sbjct: 3526115 gatgccggtgccggtggtgg 3526134
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>dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1238_G07
          Length = 78304

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 66   ctcctgcgccgccgacgccg 85
            ||||||||||||||||||||
Sbjct: 6693 ctcctgcgccgccgacgccg 6712
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>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1081_G10
          Length = 107955

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ctcctgcgccgccgacgccg 85
             ||||||||||||||||||||
Sbjct: 99106 ctcctgcgccgccgacgccg 99125
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>dbj|AB168094.1| Chlamydomonas reinhardtii LciC mRNA for low-CO2 inducible protein
            LCIC, complete cds
          Length = 2292

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 99   cggtgccggtggtggcggca 118
            ||||||||||||||||||||
Sbjct: 1258 cggtgccggtggtggcggca 1239
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>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0625E02
          Length = 153921

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 234   ccgcctccatcgccgccgcgcaga 257
             ||||| ||||||||||||||||||
Sbjct: 26648 ccgccgccatcgccgccgcgcaga 26671
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>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0450A04
          Length = 162545

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 234    ccgcctccatcgccgccgcgcaga 257
              ||||| ||||||||||||||||||
Sbjct: 154399 ccgccgccatcgccgccgcgcaga 154422
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>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0413H11
          Length = 147655

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   ccgcctccattgccgccgcg 379
             ||||||||||||||||||||
Sbjct: 55218 ccgcctccattgccgccgcg 55237
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>dbj|AB112656.1| Oryza sativa (japonica cultivar-group) OsCAX1a mRNA for
           cation/proton exchanger 1a, complete cds
          Length = 1895

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 cccgcctccatcgccgccgc 252
           ||||||||||||||||||||
Sbjct: 230 cccgcctccatcgccgccgc 211
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>dbj|AK120895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030A06, full
           insert sequence
          Length = 1464

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  cgccgccgacgccgctgaagcaga 95
           |||||||| |||||||||||||||
Sbjct: 435 cgccgccgtcgccgctgaagcaga 412
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>dbj|AK120863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025A08, full
           insert sequence
          Length = 1362

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 66  ctcctgcgccgccgacgccg 85
           ||||||||||||||||||||
Sbjct: 128 ctcctgcgccgccgacgccg 109
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>dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0685B10
          Length = 148544

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    ctcccgcctccatcgccgcc 250
              ||||||||||||||||||||
Sbjct: 118064 ctcccgcctccatcgccgcc 118045
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>emb|X97916.1|HVBLT141 H.vulgare blt14.1 gene
          Length = 963

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  tgccggtgccggtggtggcg 115
           ||||||||||||||||||||
Sbjct: 531 tgccggtgccggtggtggcg 550
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>dbj|AK109104.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-B05,
          full insert sequence
          Length = 1034

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 66 ctcctgcgccgccgacgccg 85
          ||||||||||||||||||||
Sbjct: 67 ctcctgcgccgccgacgccg 48
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>dbj|AK100765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119J24, full
           insert sequence
          Length = 1962

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 cccgcctccatcgccgccgc 252
           ||||||||||||||||||||
Sbjct: 221 cccgcctccatcgccgccgc 202
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>dbj|AK070338.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049D17, full
           insert sequence
          Length = 1763

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 360 ccgcctccattgccgccgcg 379
           ||||||||||||||||||||
Sbjct: 572 ccgcctccattgccgccgcg 553
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>dbj|AK061122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G04, full
           insert sequence
          Length = 1666

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 ccgcctccatcgccgccgcgcaga 257
           ||||| ||||||||||||||||||
Sbjct: 217 ccgccgccatcgccgccgcgcaga 194
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 72       cgccgccgacgccgctgaagcaga 95
                |||||||| |||||||||||||||
Sbjct: 24321992 cgccgccgtcgccgctgaagcaga 24322015
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>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103803

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    cgccgccgacgccgctgaagcaga 95
             |||||||| |||||||||||||||
Sbjct: 57318 cgccgccgtcgccgctgaagcaga 57341
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 81      cgccgctgaagcagatgccggtgc 104
               ||||| ||||||||||||||||||
Sbjct: 2397006 cgccgatgaagcagatgccggtgc 2397029
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>gb|L28092.1|BLYTRAA Hordeum vulgare transmembrane protein mRNA fragment
          Length = 642

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  tgccggtgccggtggtggcg 115
           ||||||||||||||||||||
Sbjct: 222 tgccggtgccggtggtggcg 241
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>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster,
             partial and complete cds
          Length = 113234

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gatgccggtgccggtggtgg 113
             ||||||||||||||||||||
Sbjct: 60173 gatgccggtgccggtggtgg 60192



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    gatgccggtgccggtggtgg 113
             ||||||||||||||||||||
Sbjct: 28624 gatgccggtgccggtggtgg 28605


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,954,676
Number of Sequences: 3902068
Number of extensions: 2954676
Number of successful extensions: 77860
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75441
Number of HSP's gapped (non-prelim): 2419
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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