ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast72g05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189395.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1158 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 203 gagctgctgctctgcgacggctgcgaccgcggcctccaca 242 ||||||||||| |||||||||||||||||||||| ||||| Sbjct: 241 gagctgctgctgtgcgacggctgcgaccgcggccgccaca 280
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 203 gagctgctgctctgcgacggctgcgaccgcggcctccaca 242 ||||||||||| |||||||||||||||||||||| ||||| Sbjct: 42560542 gagctgctgctgtgcgacggctgcgaccgcggccgccaca 42560581 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 gacgagctgctgctctgcgacggct 224 ||||||||||||||| ||||||||| Sbjct: 21684447 gacgagctgctgctcagcgacggct 21684471
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458E05 Length = 193577 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 203 gagctgctgctctgcgacggctgcgaccgcggcctccaca 242 ||||||||||| |||||||||||||||||||||| ||||| Sbjct: 81425 gagctgctgctgtgcgacggctgcgaccgcggccgccaca 81464
>ref|XM_463928.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1086 Score = 60.0 bits (30), Expect = 3e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 203 gagctgctgctctgcgacggctgcgaccgcggcctccacatc 244 ||||||||||| ||||| ||||||||||| |||||||||||| Sbjct: 136 gagctgctgctgtgcgatggctgcgaccgtggcctccacatc 177
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 3e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 203 gagctgctgctctgcgacggctgcgaccgcggcctccacatc 244 ||||||||||| ||||| ||||||||||| |||||||||||| Sbjct: 1190981 gagctgctgctgtgcgatggctgcgaccgtggcctccacatc 1191022 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 140 ggcgacggcgacgaggacggcggcg 164 |||||||||||||| |||||||||| Sbjct: 27937517 ggcgacggcgacgacgacggcggcg 27937541 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gcgacggcgacgaggacggcggcg 164 ||||||||| |||||||||||||| Sbjct: 34208473 gcgacggcgccgaggacggcggcg 34208496 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ggcgacggcgacgaggacgg 159 |||||||||||||||||||| Sbjct: 33284982 ggcgacggcgacgaggacgg 33285001 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cggcgacgaggacggcggcg 164 |||||||||||||||||||| Sbjct: 13226189 cggcgacgaggacggcggcg 13226208
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 60.0 bits (30), Expect = 3e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 203 gagctgctgctctgcgacggctgcgaccgcggcctccacatc 244 ||||||||||| ||||| ||||||||||| |||||||||||| Sbjct: 22072 gagctgctgctgtgcgatggctgcgaccgtggcctccacatc 22113
>ref|XM_472579.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 867 Score = 52.0 bits (26), Expect = 8e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggcggcg 164 |||||||||||||||||||||||||| Sbjct: 441 cggcgacggcgacgaggacggcggcg 466
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 8e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggcggcg 164 |||||||||||||||||||||||||| Sbjct: 21701542 cggcgacggcgacgaggacggcggcg 21701567
>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20, complete sequence Length = 141915 Score = 52.0 bits (26), Expect = 8e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggcggcg 164 |||||||||||||||||||||||||| Sbjct: 13159 cggcgacggcgacgaggacggcggcg 13184
>ref|XM_555448.1| Anopheles gambiae str. PEST ENSANGP00000026535 (ENSANGG00000023635), partial mRNA Length = 678 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Plus Query: 199 ggacgagctgctgctctgcgacggctgcgaccg 231 |||| |||||||||| ||||||||||||||||| Sbjct: 465 ggacaagctgctgctgtgcgacggctgcgaccg 497
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.051 Identities = 26/27 (96%) Strand = Plus / Minus Query: 137 gccggcgacggcgacgaggacggcggc 163 |||||||||| |||||||||||||||| Sbjct: 16427624 gccggcgacgacgacgaggacggcggc 16427598 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 cgacggcgacgaggacggcg 161 |||||||||||||||||||| Sbjct: 6772910 cgacggcgacgaggacggcg 6772929
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.051 Identities = 26/27 (96%) Strand = Plus / Minus Query: 137 gccggcgacggcgacgaggacggcggc 163 |||||||||| |||||||||||||||| Sbjct: 16380854 gccggcgacgacgacgaggacggcggc 16380828 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 cgacggcgacgaggacggcg 161 |||||||||||||||||||| Sbjct: 6772789 cgacggcgacgaggacggcg 6772808
>emb|AL831812.5|CNS08CAP Oryza sativa chromosome 12, . BAC OSJNBa0054H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155947 Score = 46.1 bits (23), Expect = 0.051 Identities = 26/27 (96%) Strand = Plus / Plus Query: 137 gccggcgacggcgacgaggacggcggc 163 |||||||||| |||||||||||||||| Sbjct: 146169 gccggcgacgacgacgaggacggcggc 146195
>emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057_E03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127989 Score = 46.1 bits (23), Expect = 0.051 Identities = 26/27 (96%) Strand = Plus / Plus Query: 137 gccggcgacggcgacgaggacggcggc 163 |||||||||| |||||||||||||||| Sbjct: 24767 gccggcgacgacgacgaggacggcggc 24793
>emb|CR974588.18| Pig DNA sequence from clone CH242-201A17 on chromosome 6, complete sequence Length = 86219 Score = 46.1 bits (23), Expect = 0.051 Identities = 26/27 (96%) Strand = Plus / Minus Query: 136 ggccggcgacggcgacgaggacggcgg 162 ||||||||||| ||||||||||||||| Sbjct: 25724 ggccggcgacgacgacgaggacggcgg 25698
>emb|CR956622.12| Pig DNA sequence from clone PigE-219N9 on chromosome 6, complete sequence Length = 174170 Score = 46.1 bits (23), Expect = 0.051 Identities = 26/27 (96%) Strand = Plus / Plus Query: 136 ggccggcgacggcgacgaggacggcgg 162 ||||||||||| ||||||||||||||| Sbjct: 41864 ggccggcgacgacgacgaggacggcgg 41890
>ref|NM_001720.3| Homo sapiens bone morphogenetic protein 8b (osteogenic protein 2) (BMP8B), mRNA Length = 3773 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 ggccggcgacggcgacgaggacggcg 161 ||||||||||| |||||||||||||| Sbjct: 628 ggccggcgacgacgacgaggacggcg 653
>gb|BC023526.2| Homo sapiens bone morphogenetic protein 8b (osteogenic protein 2), mRNA (cDNA clone IMAGE:4136932) Length = 3383 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 ggccggcgacggcgacgaggacggcg 161 ||||||||||| |||||||||||||| Sbjct: 227 ggccggcgacgacgacgaggacggcg 252
>gb|BC108678.1| Homo sapiens bone morphogenetic protein 8b (osteogenic protein 2), mRNA (cDNA clone MGC:131757 IMAGE:6045180), complete cds Length = 1563 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 ggccggcgacggcgacgaggacggcg 161 ||||||||||| |||||||||||||| Sbjct: 616 ggccggcgacgacgacgaggacggcg 641
>emb|AL033527.26|HS118J21 Human DNA sequence from clone RP1-118J21 on chromosome 1p34.1-35.3 Contains the 5' end of the BMP8B gene for bone morphogenetic protein 8b (osteogenic protein 2), the 3' end of the PPIE gene for peptidylprolyl isomerase E (cyclophilin E), the OXCT2 gene for 3-oxoacid CoA transferase 2, the gene for tRNA isopentenyltransferase 1 (IPT), the MYCL1 gene for v-myc myelocytomatosis viral oncogene homolog 1 lung carcinoma derived (avian), a novel gene and seven CpG islands, complete sequence Length = 166496 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 136 ggccggcgacggcgacgaggacggcg 161 ||||||||||| |||||||||||||| Sbjct: 28764 ggccggcgacgacgacgaggacggcg 28739
>gb|AY303955.1| Homo sapiens bone morphogenetic protein 8B (BMP8B) mRNA, complete cds Length = 3773 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 ggccggcgacggcgacgaggacggcg 161 ||||||||||| |||||||||||||| Sbjct: 628 ggccggcgacgacgacgaggacggcg 653
>gb|AC012291.11| Homo sapiens chromosome 15, clone RP11-7M10, complete sequence Length = 153602 Score = 44.1 bits (22), Expect = 0.20 Identities = 34/38 (89%) Strand = Plus / Plus Query: 127 gcggcccagggccggcgacggcgacgaggacggcggcg 164 ||||| |||| |||||||||||||||| | |||||||| Sbjct: 124941 gcggcgcaggcccggcgacggcgacgacggcggcggcg 124978
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 140 ggcgacggcgacgaggacggcggcgt 165 ||||||||||||| |||||||||||| Sbjct: 18761637 ggcgacggcgacggggacggcggcgt 18761612 Score = 42.1 bits (21), Expect = 0.80 Identities = 30/33 (90%) Strand = Plus / Minus Query: 139 cggcgacggcgacgaggacggcggcgtccggtg 171 ||||||||||||| || ||||||||||||||| Sbjct: 2949214 cggcgacggcgacacggccggcggcgtccggtg 2949182 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 gccggcgacggcgacgaggacggcggcg 164 |||||||||||||| | ||||||||||| Sbjct: 24670407 gccggcgacggcgagggggacggcggcg 24670434 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gcgacggcgacgaggacggcggcg 164 |||| ||||||||||||||||||| Sbjct: 20756584 gcgatggcgacgaggacggcggcg 20756607 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 137 gccggcgacggcgacgaggacggcggcg 164 |||||||||||||||| |||||||||| Sbjct: 19740967 gccggcgacggcgacggcgacggcggcg 19740940
>gb|AY972069.1| Gordonia terrae strain CC-WC4-2 DNA gyrase subunit B (gyrB) gene, partial cds Length = 1276 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 142 cgacggcgacgaggacggcggc 163 |||||||||||||||||||||| Sbjct: 360 cgacggcgacgaggacggcggc 381
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 140 ggcgacggcgacgaggacggcggcgt 165 ||||||||||||| |||||||||||| Sbjct: 65086 ggcgacggcgacggggacggcggcgt 65061
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggc 160 |||||||||||||||||||||| Sbjct: 2118433 cggcgacggcgacgaggacggc 2118454
>gb|M97016.1|HUMOP2A Homo sapiens osteogenic protein-2 (OP-2) mRNA, complete cds Length = 1842 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 ggccggcgacggcgacgaggacggcg 161 ||||||||||| |||||||||||||| Sbjct: 748 ggccggcgacgacgacgaggacggcg 773
>ref|NM_193575.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 gacgagctgctgctctgcgacggct 224 ||||||||||||||| ||||||||| Sbjct: 935 gacgagctgctgctcagcgacggct 911
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gccggcgacggcgacgaggac 157 ||||||||||||||||||||| Sbjct: 86554 gccggcgacggcgacgaggac 86534
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 cggcgacggcgacgaggacgg 159 ||||||||||||||||||||| Sbjct: 1784224 cggcgacggcgacgaggacgg 1784204
>ref|XM_603745.2| PREDICTED: Bos taurus similar to CTD-binding SR-like protein rA9 (LOC525392), mRNA Length = 4966 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 205 gctgctgctctgcgacggctgcgac 229 |||||||||||| |||||||||||| Sbjct: 582 gctgctgctctgtgacggctgcgac 606
>ref|XM_423552.1| PREDICTED: Gallus gallus similar to Myeloid/lymphoid or mixed-lineage leukemia protein 2 (ALL1-related protein) (LOC425846), partial mRNA Length = 3528 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 205 gctgctgctctgcgacggctgcgac 229 ||||||||||||||||| ||||||| Sbjct: 2669 gctgctgctctgcgacgactgcgac 2693
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 cggcgacggcgacgaggacgg 159 ||||||||||||||||||||| Sbjct: 3029748 cggcgacggcgacgaggacgg 3029728
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 139 cggcgacggcgacgaggacggcggc 163 ||||||||||||||| ||||||||| Sbjct: 36457 cggcgacggcgacgacgacggcggc 36433
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 136 ggccggcgacggcgacgaggacggc 160 |||||||||||||| |||||||||| Sbjct: 3099335 ggccggcgacggcgtcgaggacggc 3099311
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 cggcgacggcgacgaggacgg 159 ||||||||||||||||||||| Sbjct: 2759679 cggcgacggcgacgaggacgg 2759659
>emb|CR386792.1| Gallus gallus finished cDNA, clone ChEST910a3 Length = 836 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 gcagcgccaccggacccgcgc 123 ||||||||||||||||||||| Sbjct: 245 gcagcgccaccggacccgcgc 225
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gccggcgacggcgacgaggac 157 ||||||||||||||||||||| Sbjct: 3718882 gccggcgacggcgacgaggac 3718862
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 139 cggcgacggcgacgaggacggcggc 163 ||||||||||||||| ||||||||| Sbjct: 11582522 cggcgacggcgacgacgacggcggc 11582498
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggcggc 163 ||||||||||||||||| ||||||| Sbjct: 18393916 cggcgacggcgacgagggcggcggc 18393940 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gcgacggcgacgaggacggcggcg 164 |||||| ||||||||||||||||| Sbjct: 19224759 gcgacgtcgacgaggacggcggcg 19224736
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggcggc 163 ||||||||||||||||| ||||||| Sbjct: 108652 cggcgacggcgacgagggcggcggc 108676
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463D04 Length = 145828 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggcggc 163 ||||||||||||||||| ||||||| Sbjct: 55790 cggcgacggcgacgagggcggcggc 55814
>dbj|AP003296.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0697C12 Length = 149098 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 gacgagctgctgctctgcgacggct 224 ||||||||||||||| ||||||||| Sbjct: 141000 gacgagctgctgctcagcgacggct 141024
>dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0002B05 Length = 141275 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 gacgagctgctgctctgcgacggct 224 ||||||||||||||| ||||||||| Sbjct: 36498 gacgagctgctgctcagcgacggct 36522
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 140 ggcgacggcgacgaggacggcggcg 164 |||||||||||||| |||||||||| Sbjct: 64969 ggcgacggcgacgacgacggcggcg 64993
>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0443G08 Length = 162139 Score = 42.1 bits (21), Expect = 0.80 Identities = 30/33 (90%) Strand = Plus / Minus Query: 139 cggcgacggcgacgaggacggcggcgtccggtg 171 ||||||||||||| || ||||||||||||||| Sbjct: 122276 cggcgacggcgacacggccggcggcgtccggtg 122244
>dbj|AK120986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042H12, full insert sequence Length = 1841 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggcggc 163 ||||||||||||||| ||||||||| Sbjct: 344 cggcgacggcgacgacgacggcggc 368
>dbj|AK107853.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-A11, full insert sequence Length = 779 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggcggc 163 ||||||||||||||||| ||||||| Sbjct: 168 cggcgacggcgacgagggcggcggc 192
>dbj|AK072817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141L10, full insert sequence Length = 1927 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gccggcgacggcgacgaggac 157 ||||||||||||||||||||| Sbjct: 551 gccggcgacggcgacgaggac 571
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 139 cggcgacggcgacgaggacggcggc 163 ||||||||||||||| ||||||||| Sbjct: 11588962 cggcgacggcgacgacgacggcggc 11588938
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gccggcgacggcgacgaggac 157 ||||||||||||||||||||| Sbjct: 3727576 gccggcgacggcgacgaggac 3727556
>gb|L01700.1|RABA1AR Oryctolagus cuniculus A1 adenosine receptor mRNA, complete cds Length = 2215 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gccggcgacggcgacgaggac 157 ||||||||||||||||||||| Sbjct: 977 gccggcgacggcgacgaggac 997
>gb|AE010444.1| Methanopyrus kandleri AV19 section 143 of 157 of the complete genome Length = 7685 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 166 ccggtgcgaggcgtgcgggtccggccgc 193 ||||||||||| ||||||| |||||||| Sbjct: 7469 ccggtgcgaggggtgcgggaccggccgc 7496
>ref|XM_483181.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2389 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 gccggcgacggcgacgaggacggcggcg 164 |||||||||||||| | ||||||||||| Sbjct: 68 gccggcgacggcgagggggacggcggcg 95
>ref|XM_482511.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1605 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gcgacggcgacgaggacggcggcg 164 |||| ||||||||||||||||||| Sbjct: 29 gcgatggcgacgaggacggcggcg 6
>ref|XM_482384.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1394 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 gccggcgacggcgacgaggacggcggcg 164 |||||||||||||||| |||||||||| Sbjct: 628 gccggcgacggcgacggcgacggcggcg 655
>ref|XM_465300.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1914 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cggcgacgaggacggcggcg 164 |||||||||||||||||||| Sbjct: 261 cggcgacgaggacggcggcg 242
>ref|XM_506796.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0042G06.21 mRNA Length = 2041 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cggcgacgaggacggcggcg 164 |||||||||||||||||||| Sbjct: 258 cggcgacgaggacggcggcg 239
>gb|AF521194.1| Pogonomyrmex rugosus clone PR1 microsatellite sequence Length = 395 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gcgacggcgacgaggacggc 160 |||||||||||||||||||| Sbjct: 243 gcgacggcgacgaggacggc 224
>ref|XM_368420.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00824.4) partial mRNA Length = 1926 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 gggccggcgacggcgacgaggacg 158 ||||||||||||||||||| |||| Sbjct: 1631 gggccggcgacggcgacgacgacg 1654
>gb|AC108753.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0010B06, complete sequence Length = 129310 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gcgacggcgacgaggacggcggcg 164 |||||| ||||||||||||||||| Sbjct: 7975 gcgacgtcgacgaggacggcggcg 7952
>ref|XM_951788.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B1D1.160 [imported] - Neurospora crassa OR74A ) (NCU01675.1) partial mRNA Length = 3828 Score = 40.1 bits (20), Expect = 3.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 130 gcccagggccggcgacggcgacgaggacggcg 161 ||||| || |||||||| |||||||||||||| Sbjct: 3375 gcccaagggcggcgacgacgacgaggacggcg 3406
>ref|XM_328113.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B1D1.160 [imported] - Neurospora crassa OR74A ) (NCU01675.1) partial mRNA Length = 3828 Score = 40.1 bits (20), Expect = 3.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 130 gcccagggccggcgacggcgacgaggacggcg 161 ||||| || |||||||| |||||||||||||| Sbjct: 3375 gcccaagggcggcgacgacgacgaggacggcg 3406
>ref|XM_744625.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g05890) partial mRNA Length = 2706 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacg 158 |||||||||||||||||||| Sbjct: 2247 cggcgacggcgacgaggacg 2266
>emb|X59733.1|XB28SRRNA X.borealis 28S ribosomal RNA gene for 28S rRNA Length = 7618 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 128 cggcccagggccggcgacggcgacgagg 155 ||||||| |||||||| ||||||||||| Sbjct: 2692 cggcccacggccggcggcggcgacgagg 2719
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cggcgacgaggacggcggcg 164 |||||||||||||||||||| Sbjct: 201141 cggcgacgaggacggcggcg 201122
>emb|AL355927.1|NCB1D1 Neurospora crassa DNA linkage group II BAC clone B1D1 Length = 76072 Score = 40.1 bits (20), Expect = 3.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 130 gcccagggccggcgacggcgacgaggacggcg 161 ||||| || |||||||| |||||||||||||| Sbjct: 33011 gcccaagggcggcgacgacgacgaggacggcg 33042
>gb|M36008.1|XELEBNA2 X.borealis 18S rRNA gene, 3' end, 5.8S rRNA gene, complete, ITS2, and 28S ribosomal RNA gene, 5 ' end Length = 1589 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 128 cggcccagggccggcgacggcgacgagg 155 ||||||| |||||||| ||||||||||| Sbjct: 654 cggcccacggccggcggcggcgacgagg 681
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cgacggcgacgaggacggcg 161 |||||||||||||||||||| Sbjct: 104875 cgacggcgacgaggacggcg 104856
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggcgg 162 |||||||||||| ||||||||||| Sbjct: 188561 cggcgacggcgaggaggacggcgg 188584
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gcgacgaggacggcggcgtc 166 |||||||||||||||||||| Sbjct: 2144318 gcgacgaggacggcggcgtc 2144299
>gb|AC012370.8| Homo sapiens BAC clone RP11-568D19 from 2, complete sequence Length = 105362 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cccgcgcggggcggcccagg 136 |||||||||||||||||||| Sbjct: 63999 cccgcgcggggcggcccagg 64018
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gacgaggacggcggcgtccg 168 |||||||||||||||||||| Sbjct: 4489368 gacgaggacggcggcgtccg 4489349
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 cggcgacggcgacgaggacggcgg 162 ||||||||||||||||| |||||| Sbjct: 3342303 cggcgacggcgacgagggcggcgg 3342326
>dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_A06 Length = 92836 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 gccggcgacggcgacgaggacggcggcg 164 |||||||||||||| | ||||||||||| Sbjct: 42711 gccggcgacggcgagggggacggcggcg 42738
>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0032L17 Length = 165808 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gcgacggcgacgaggacggcggcg 164 ||||||||| |||||||||||||| Sbjct: 135987 gcgacggcgccgaggacggcggcg 136010
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689B12 Length = 154745 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gcgacggcgacgaggacggcggcg 164 ||||||||| |||||||||||||| Sbjct: 43746 gcgacggcgccgaggacggcggcg 43769
>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1311_D08 Length = 163702 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ggcgacggcgacgaggacgg 159 |||||||||||||||||||| Sbjct: 114291 ggcgacggcgacgaggacgg 114310
>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1715_H01 Length = 138733 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ggcgacggcgacgaggacgg 159 |||||||||||||||||||| Sbjct: 25732 ggcgacggcgacgaggacgg 25751
>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0042G06 Length = 123571 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cggcgacgaggacggcggcg 164 |||||||||||||||||||| Sbjct: 96219 cggcgacgaggacggcggcg 96238
>dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0622F08 Length = 140628 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cggcgacgaggacggcggcg 164 |||||||||||||||||||| Sbjct: 34116 cggcgacgaggacggcggcg 34135
>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04 Length = 176293 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 137 gccggcgacggcgacgaggacggcggcg 164 |||||||||||||||| |||||||||| Sbjct: 69918 gccggcgacggcgacggcgacggcggcg 69891
>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C08 Length = 152460 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gcgacggcgacgaggacggcggcg 164 |||| ||||||||||||||||||| Sbjct: 129037 gcgatggcgacgaggacggcggcg 129060
>dbj|AK108716.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B08, full insert sequence Length = 1394 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 gccggcgacggcgacgaggacggcggcg 164 |||||||||||||||| |||||||||| Sbjct: 628 gccggcgacggcgacggcgacggcggcg 655
>dbj|AK099866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111E08, full insert sequence Length = 2389 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 gccggcgacggcgacgaggacggcggcg 164 |||||||||||||| | ||||||||||| Sbjct: 68 gccggcgacggcgagggggacggcggcg 95
>dbj|AK072325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033M07, full insert sequence Length = 1914 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cggcgacgaggacggcggcg 164 |||||||||||||||||||| Sbjct: 261 cggcgacgaggacggcggcg 242
>dbj|AK068019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013133B03, full insert sequence Length = 2041 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cggcgacgaggacggcggcg 164 |||||||||||||||||||| Sbjct: 258 cggcgacgaggacggcggcg 239
>dbj|AK063016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A10, full insert sequence Length = 590 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cggcgacgaggacggcggcg 164 |||||||||||||||||||| Sbjct: 87 cggcgacgaggacggcggcg 68
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 tggcccccgccacgcagcag 106 |||||||||||||||||||| Sbjct: 1298145 tggcccccgccacgcagcag 1298164
>emb|AL713935.5|CNS07YPG Oryza sativa chromosome 12, . BAC OJ1427_C06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 88558 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cgacggcgacgaggacggcg 161 |||||||||||||||||||| Sbjct: 45618 cgacggcgacgaggacggcg 45599
>emb|AL845364.4| Mouse DNA sequence from clone RP23-301M3 on chromosome 4, complete sequence Length = 205273 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gcgggtccggccgccacgcg 199 |||||||||||||||||||| Sbjct: 97858 gcgggtccggccgccacgcg 97839
>dbj|AB070951.1| Streptomyces avermitilis peptide-2 biosynthetic gene cluster Length = 32748 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 gacgaggacggcggcgtccg 168 |||||||||||||||||||| Sbjct: 31492 gacgaggacggcggcgtccg 31511 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,334,037 Number of Sequences: 3902068 Number of extensions: 1334037 Number of successful extensions: 47780 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45011 Number of HSP's gapped (non-prelim): 2742 length of query: 244 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 222 effective length of database: 17,147,199,772 effective search space: 3806678349384 effective search space used: 3806678349384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
