| Clone Name | bast72g03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450594.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1737 Score = 145 bits (73), Expect = 1e-31 Identities = 136/157 (86%) Strand = Plus / Plus Query: 190 ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249 |||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 183 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 242 Query: 250 agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309 || |||||||||||||||||||||||||||| |||| | | |||| ||||||| | Sbjct: 243 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 302 Query: 310 ccgctgacttcatgcggctcatcttccgcaagtccgg 346 |||| ||||||||||||||||||| |||||||||||| Sbjct: 303 ccgccgacttcatgcggctcatctaccgcaagtccgg 339
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 145 bits (73), Expect = 1e-31 Identities = 136/157 (86%) Strand = Plus / Minus Query: 190 ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249 |||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 11695646 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 11695587 Query: 250 agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309 || |||||||||||||||||||||||||||| |||| | | |||| ||||||| | Sbjct: 11695586 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 11695527 Query: 310 ccgctgacttcatgcggctcatcttccgcaagtccgg 346 |||| ||||||||||||||||||| |||||||||||| Sbjct: 11695526 ccgccgacttcatgcggctcatctaccgcaagtccgg 11695490
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711F01 Length = 193091 Score = 145 bits (73), Expect = 1e-31 Identities = 136/157 (86%) Strand = Plus / Minus Query: 190 ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249 |||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 130280 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 130221 Query: 250 agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309 || |||||||||||||||||||||||||||| |||| | | |||| ||||||| | Sbjct: 130220 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 130161 Query: 310 ccgctgacttcatgcggctcatcttccgcaagtccgg 346 |||| ||||||||||||||||||| |||||||||||| Sbjct: 130160 ccgccgacttcatgcggctcatctaccgcaagtccgg 130124
>dbj|AK105487.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B09, full insert sequence Length = 1737 Score = 145 bits (73), Expect = 1e-31 Identities = 136/157 (86%) Strand = Plus / Plus Query: 190 ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249 |||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 183 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 242 Query: 250 agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309 || |||||||||||||||||||||||||||| |||| | | |||| ||||||| | Sbjct: 243 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 302 Query: 310 ccgctgacttcatgcggctcatcttccgcaagtccgg 346 |||| ||||||||||||||||||| |||||||||||| Sbjct: 303 ccgccgacttcatgcggctcatctaccgcaagtccgg 339
>dbj|AK024230.1| Homo sapiens cDNA FLJ14168 fis, clone NT2RP2001440, highly similar to Homo sapiens mRNA for 14-3-3gamma Length = 3725 Score = 46.1 bits (23), Expect = 0.076 Identities = 29/31 (93%) Strand = Plus / Minus Query: 83 catggccgcggccgtgtcgtcgctgcgctcc 113 ||||||||||||| ||||||||| ||||||| Sbjct: 262 catggccgcggccatgtcgtcgcagcgctcc 232
>gb|AY095366.1| Squirrel monkey herpesvirus 1 UL28 gene, partial cds; glycoprotein B, UL26.5, and protease genes, complete cds; and capsid associated tegument protein gene, partial cds Length = 6751 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 83 catggccgcggccgtgtcgtcgctgc 108 |||||||||||| ||||||||||||| Sbjct: 6660 catggccgcggctgtgtcgtcgctgc 6635
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 ccgacgagaccgctgacttcatgcg 325 ||||||||||||| ||||||||||| Sbjct: 5638 ccgacgagaccgcagacttcatgcg 5614
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 77 gtcgtccatggccgcggccgtgtcgtcgc 105 |||||||||||||||| ||| |||||||| Sbjct: 524776 gtcgtccatggccgcgcccgcgtcgtcgc 524748
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 74 gtcgtcgtccatggccgcggccgtgtcgt 102 ||||||||||||||| ||||| ||||||| Sbjct: 21209291 gtcgtcgtccatggcggcggcggtgtcgt 21209319
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 tcgtccatggccgcggccgtg 98 ||||||||||||||||||||| Sbjct: 2089403 tcgtccatggccgcggccgtg 2089423
>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456F09 Length = 141336 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 74 gtcgtcgtccatggccgcggccgtgtcgt 102 ||||||||||||||| ||||| ||||||| Sbjct: 107952 gtcgtcgtccatggcggcggcggtgtcgt 107980
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 74 gtcgtcgtccatggccgcggccgtgtcgt 102 ||||||||||||||| ||||| ||||||| Sbjct: 4667 gtcgtcgtccatggcggcggcggtgtcgt 4695
>dbj|AK107448.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C02, full insert sequence Length = 880 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 74 gtcgtcgtccatggccgcggccgtgtcgt 102 ||||||||||||||| ||||| ||||||| Sbjct: 708 gtcgtcgtccatggcggcggcggtgtcgt 736
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 tccgctccaagcgctacaccg 303 ||||||||||||||||||||| Sbjct: 1151920 tccgctccaagcgctacaccg 1151900
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 77 gtcgtccatggccgcggccgtgtcgtcgc 105 |||||||||||||||| ||| |||||||| Sbjct: 524776 gtcgtccatggccgcgcccgcgtcgtcgc 524748
>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 130544 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 77 gtcgtccatggccgcggccgtgtcgtcgc 105 |||||||||||||||| ||| |||||||| Sbjct: 45536 gtcgtccatggccgcgcccgcgtcgtcgc 45564
>ref|NM_188609.1| Oryza sativa (japonica cultivar-group), Ozsa8212 predicted mRNA Length = 1560 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 tcgtcgtccatggccgcggccgtg 98 ||||||||||||||||| |||||| Sbjct: 1292 tcgtcgtccatggccgccgccgtg 1315
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tctcggccatgtcgtcgtcc 83 |||||||||||||||||||| Sbjct: 3355900 tctcggccatgtcgtcgtcc 3355919
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgttcttgggcggcagcggc 201 |||||||||||||||||||| Sbjct: 266040 cgttcttgggcggcagcggc 266021
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tctcggccatgtcgtcgtcc 83 |||||||||||||||||||| Sbjct: 394940 tctcggccatgtcgtcgtcc 394959
>ref|XM_805963.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510039.60) partial mRNA Length = 3153 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tgacttcatgcggctcatct 333 |||||||||||||||||||| Sbjct: 1600 tgacttcatgcggctcatct 1581
>ref|XM_815696.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509979.130) partial mRNA Length = 3357 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tgacttcatgcggctcatct 333 |||||||||||||||||||| Sbjct: 1804 tgacttcatgcggctcatct 1785
>emb|Z92547.1|HS863K19 Human DNA sequence from clone RP5-863K19 on chromosome Xp22.11-22.2 Contains the 5'end of a novel gene, complete sequence Length = 134845 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cagtgcaacctggaggtgtg 268 |||||||||||||||||||| Sbjct: 63211 cagtgcaacctggaggtgtg 63192
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tctcggccatgtcgtcgtcc 83 |||||||||||||||||||| Sbjct: 91152 tctcggccatgtcgtcgtcc 91171
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tctcggccatgtcgtcgtcc 83 |||||||||||||||||||| Sbjct: 204664 tctcggccatgtcgtcgtcc 204683
>gb|AY263810.1| Eucalyptus globulus histone H4 mRNA, complete cds Length = 451 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ggtcaccgtcttccggcgcg 183 |||||||||||||||||||| Sbjct: 249 ggtcaccgtcttccggcgcg 230
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tcgtcgtccatggccgcggc 94 |||||||||||||||||||| Sbjct: 16549592 tcgtcgtccatggccgcggc 16549573
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 tcgtcgtccatggccgcggccgtg 98 ||||||||||||||||| |||||| Sbjct: 7219524 tcgtcgtccatggccgccgccgtg 7219501
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 tcgtcgtccatggccgcggccgtg 98 ||||||||||||||||| |||||| Sbjct: 114172 tcgtcgtccatggccgccgccgtg 114149
>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431F01 Length = 143209 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 tcgtcgtccatggccgcggccgtg 98 ||||||||||||||||| |||||| Sbjct: 20954 tcgtcgtccatggccgccgccgtg 20931
>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0527E02 Length = 176826 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tcgtcgtccatggccgcggc 94 |||||||||||||||||||| Sbjct: 123007 tcgtcgtccatggccgcggc 122988
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 ctcggccatgtcgtcgtccatggc 88 ||||||||||||||||| |||||| Sbjct: 3526581 ctcggccatgtcgtcgtacatggc 3526604 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,707,868 Number of Sequences: 3902068 Number of extensions: 1707868 Number of successful extensions: 42221 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41650 Number of HSP's gapped (non-prelim): 563 length of query: 352 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 330 effective length of database: 17,147,199,772 effective search space: 5658575924760 effective search space used: 5658575924760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)