ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast72g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_450594.1| Oryza sativa (japonica cultivar-group), mRNA 145 1e-31
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
3dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
4dbj|AK105487.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
5dbj|AK024230.1| Homo sapiens cDNA FLJ14168 fis, clone NT2RP20014... 46 0.076
6gb|AY095366.1| Squirrel monkey herpesvirus 1 UL28 gene, partial ... 44 0.30
7gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipie... 42 1.2
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
10gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.2
11dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
12dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
13dbj|AK107448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
14gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 42 1.2
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
16emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb... 42 1.2
17ref|NM_188609.1| Oryza sativa (japonica cultivar-group), Ozsa821... 40 4.7
18gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 4.7
19gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 4.7
20gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 4.7
21ref|XM_805963.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 4.7
22ref|XM_815696.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 4.7
23emb|Z92547.1|HS863K19 Human DNA sequence from clone RP5-863K19 o... 40 4.7
24gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 4.7
25emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.7
26gb|AY263810.1| Eucalyptus globulus histone H4 mRNA, complete cds 40 4.7
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
29dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
30dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
31dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
32emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 4.7

>ref|XM_450594.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1737

 Score =  145 bits (73), Expect = 1e-31
 Identities = 136/157 (86%)
 Strand = Plus / Plus

                                                                       
Query: 190 ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249
           |||||| |||||||||||||||||| ||||||||||||||||| |||||||  |||||  
Sbjct: 183 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 242

                                                                       
Query: 250 agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309
           ||   ||||||||||||||||||||||||||||  |||| |   | |||| ||||||| |
Sbjct: 243 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 302

                                                
Query: 310 ccgctgacttcatgcggctcatcttccgcaagtccgg 346
           |||| ||||||||||||||||||| ||||||||||||
Sbjct: 303 ccgccgacttcatgcggctcatctaccgcaagtccgg 339



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  145 bits (73), Expect = 1e-31
 Identities = 136/157 (86%)
 Strand = Plus / Minus

                                                                            
Query: 190      ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249
                |||||| |||||||||||||||||| ||||||||||||||||| |||||||  |||||  
Sbjct: 11695646 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 11695587

                                                                            
Query: 250      agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309
                ||   ||||||||||||||||||||||||||||  |||| |   | |||| ||||||| |
Sbjct: 11695586 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 11695527

                                                     
Query: 310      ccgctgacttcatgcggctcatcttccgcaagtccgg 346
                |||| ||||||||||||||||||| ||||||||||||
Sbjct: 11695526 ccgccgacttcatgcggctcatctaccgcaagtccgg 11695490



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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score =  145 bits (73), Expect = 1e-31
 Identities = 136/157 (86%)
 Strand = Plus / Minus

                                                                          
Query: 190    ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249
              |||||| |||||||||||||||||| ||||||||||||||||| |||||||  |||||  
Sbjct: 130280 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 130221

                                                                          
Query: 250    agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309
              ||   ||||||||||||||||||||||||||||  |||| |   | |||| ||||||| |
Sbjct: 130220 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 130161

                                                   
Query: 310    ccgctgacttcatgcggctcatcttccgcaagtccgg 346
              |||| ||||||||||||||||||| ||||||||||||
Sbjct: 130160 ccgccgacttcatgcggctcatctaccgcaagtccgg 130124



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>dbj|AK105487.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B09, full
           insert sequence
          Length = 1737

 Score =  145 bits (73), Expect = 1e-31
 Identities = 136/157 (86%)
 Strand = Plus / Plus

                                                                       
Query: 190 ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249
           |||||| |||||||||||||||||| ||||||||||||||||| |||||||  |||||  
Sbjct: 183 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 242

                                                                       
Query: 250 agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309
           ||   ||||||||||||||||||||||||||||  |||| |   | |||| ||||||| |
Sbjct: 243 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 302

                                                
Query: 310 ccgctgacttcatgcggctcatcttccgcaagtccgg 346
           |||| ||||||||||||||||||| ||||||||||||
Sbjct: 303 ccgccgacttcatgcggctcatctaccgcaagtccgg 339



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>dbj|AK024230.1| Homo sapiens cDNA FLJ14168 fis, clone NT2RP2001440, highly similar
           to Homo sapiens mRNA for 14-3-3gamma
          Length = 3725

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 83  catggccgcggccgtgtcgtcgctgcgctcc 113
           ||||||||||||| ||||||||| |||||||
Sbjct: 262 catggccgcggccatgtcgtcgcagcgctcc 232



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>gb|AY095366.1| Squirrel monkey herpesvirus 1 UL28 gene, partial cds; glycoprotein B,
            UL26.5, and protease genes, complete cds; and capsid
            associated tegument protein gene, partial cds
          Length = 6751

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 83   catggccgcggccgtgtcgtcgctgc 108
            |||||||||||| |||||||||||||
Sbjct: 6660 catggccgcggctgtgtcgtcgctgc 6635



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>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940117D9, complete sequence
          Length = 143368

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 301  ccgacgagaccgctgacttcatgcg 325
            ||||||||||||| |||||||||||
Sbjct: 5638 ccgacgagaccgcagacttcatgcg 5614



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 77     gtcgtccatggccgcggccgtgtcgtcgc 105
              |||||||||||||||| ||| ||||||||
Sbjct: 524776 gtcgtccatggccgcgcccgcgtcgtcgc 524748



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 74       gtcgtcgtccatggccgcggccgtgtcgt 102
                ||||||||||||||| ||||| |||||||
Sbjct: 21209291 gtcgtcgtccatggcggcggcggtgtcgt 21209319



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 78      tcgtccatggccgcggccgtg 98
               |||||||||||||||||||||
Sbjct: 2089403 tcgtccatggccgcggccgtg 2089423



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>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456F09
          Length = 141336

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 74     gtcgtcgtccatggccgcggccgtgtcgt 102
              ||||||||||||||| ||||| |||||||
Sbjct: 107952 gtcgtcgtccatggcggcggcggtgtcgt 107980



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>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0656E03
          Length = 181786

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 74   gtcgtcgtccatggccgcggccgtgtcgt 102
            ||||||||||||||| ||||| |||||||
Sbjct: 4667 gtcgtcgtccatggcggcggcggtgtcgt 4695



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>dbj|AK107448.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C02, full
           insert sequence
          Length = 880

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 74  gtcgtcgtccatggccgcggccgtgtcgt 102
           ||||||||||||||| ||||| |||||||
Sbjct: 708 gtcgtcgtccatggcggcggcggtgtcgt 736



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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 283     tccgctccaagcgctacaccg 303
               |||||||||||||||||||||
Sbjct: 1151920 tccgctccaagcgctacaccg 1151900



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 77     gtcgtccatggccgcggccgtgtcgtcgc 105
              |||||||||||||||| ||| ||||||||
Sbjct: 524776 gtcgtccatggccgcgcccgcgtcgtcgc 524748



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>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130544

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 77    gtcgtccatggccgcggccgtgtcgtcgc 105
             |||||||||||||||| ||| ||||||||
Sbjct: 45536 gtcgtccatggccgcgcccgcgtcgtcgc 45564



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>ref|NM_188609.1| Oryza sativa (japonica cultivar-group), Ozsa8212 predicted mRNA
          Length = 1560

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 75   tcgtcgtccatggccgcggccgtg 98
            ||||||||||||||||| ||||||
Sbjct: 1292 tcgtcgtccatggccgccgccgtg 1315



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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 64      tctcggccatgtcgtcgtcc 83
               ||||||||||||||||||||
Sbjct: 3355900 tctcggccatgtcgtcgtcc 3355919



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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    cgttcttgggcggcagcggc 201
              ||||||||||||||||||||
Sbjct: 266040 cgttcttgggcggcagcggc 266021



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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     tctcggccatgtcgtcgtcc 83
              ||||||||||||||||||||
Sbjct: 394940 tctcggccatgtcgtcgtcc 394959



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>ref|XM_805963.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053510039.60) partial mRNA
          Length = 3153

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 314  tgacttcatgcggctcatct 333
            ||||||||||||||||||||
Sbjct: 1600 tgacttcatgcggctcatct 1581



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>ref|XM_815696.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053509979.130) partial mRNA
          Length = 3357

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 314  tgacttcatgcggctcatct 333
            ||||||||||||||||||||
Sbjct: 1804 tgacttcatgcggctcatct 1785



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>emb|Z92547.1|HS863K19 Human DNA sequence from clone RP5-863K19 on chromosome Xp22.11-22.2
             Contains the 5'end of a novel gene, complete sequence
          Length = 134845

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   cagtgcaacctggaggtgtg 268
             ||||||||||||||||||||
Sbjct: 63211 cagtgcaacctggaggtgtg 63192



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    tctcggccatgtcgtcgtcc 83
             ||||||||||||||||||||
Sbjct: 91152 tctcggccatgtcgtcgtcc 91171



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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     tctcggccatgtcgtcgtcc 83
              ||||||||||||||||||||
Sbjct: 204664 tctcggccatgtcgtcgtcc 204683



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>gb|AY263810.1| Eucalyptus globulus histone H4 mRNA, complete cds
          Length = 451

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 ggtcaccgtcttccggcgcg 183
           ||||||||||||||||||||
Sbjct: 249 ggtcaccgtcttccggcgcg 230



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 75       tcgtcgtccatggccgcggc 94
                ||||||||||||||||||||
Sbjct: 16549592 tcgtcgtccatggccgcggc 16549573



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 75      tcgtcgtccatggccgcggccgtg 98
               ||||||||||||||||| ||||||
Sbjct: 7219524 tcgtcgtccatggccgccgccgtg 7219501



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>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0485D09
          Length = 150594

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     tcgtcgtccatggccgcggccgtg 98
              ||||||||||||||||| ||||||
Sbjct: 114172 tcgtcgtccatggccgccgccgtg 114149



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>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431F01
          Length = 143209

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    tcgtcgtccatggccgcggccgtg 98
             ||||||||||||||||| ||||||
Sbjct: 20954 tcgtcgtccatggccgccgccgtg 20931



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>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0527E02
          Length = 176826

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     tcgtcgtccatggccgcggc 94
              ||||||||||||||||||||
Sbjct: 123007 tcgtcgtccatggccgcggc 122988



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 65      ctcggccatgtcgtcgtccatggc 88
               ||||||||||||||||| ||||||
Sbjct: 3526581 ctcggccatgtcgtcgtacatggc 3526604


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,707,868
Number of Sequences: 3902068
Number of extensions: 1707868
Number of successful extensions: 42221
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41650
Number of HSP's gapped (non-prelim): 563
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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