ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast72f12 |
|---|---|
| Clone Library Name | barley_pub |
>YJB1_SCHPO (O74939) Hypothetical protein C553.01c in chromosome III| Length = 715 Score = 32.3 bits (72), Expect = 0.31 Identities = 13/27 (48%), Positives = 21/27 (77%) Frame = +3 Query: 201 ISSAPSPRAGSVTPRKTPKPPRVLTPL 281 ISS+P+ RA +++P K KPP++LT + Sbjct: 609 ISSSPTVRAVNLSPSKNQKPPKILTKI 635
>VGLG_BRSVS (O10686) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 257 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = +3 Query: 180 CAGELSAIS-------SAPSPRAGSVTPRKTPKP 260 C G L+ +S APS RA ++TP+KTPKP Sbjct: 176 CEGNLACLSLCQIGPERAPS-RAPTITPKKTPKP 208
>DIAP2_HUMAN (O60879) Protein diaphanous homolog 2 (Diaphanous-related formin-2)| (DRF2) Length = 1101 Score = 28.5 bits (62), Expect = 4.5 Identities = 20/53 (37%), Positives = 24/53 (45%) Frame = +3 Query: 123 RDARISENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPL 281 RD +I E A ++ L R A LS+ S P P A P P PP PL Sbjct: 521 RDEKIKELEAEIQQL--RTQAQVLSSSSGIPGPPAAPPLPGVGPPPPPPAPPL 571
>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1) Length = 4374 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 Query: 171 LRRCAGELSAISSAPSPRAGSVTPRKTP 254 L G+ SA S+ PRAGS TP P Sbjct: 2867 LEEAVGDTSAAGSSEQPRAGSSTPGDAP 2894
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = +3 Query: 174 RRCAGELSAISSA--PSPRAGSVTPRKTPKPP 263 R GEL+AI S+ P+P+A SV P K P Sbjct: 557 RALGGELAAIPSSPQPTPKAASVQPATASKSP 588
>QUEA_RHOS4 (Q3J252) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 346 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -3 Query: 292 PERRSGVRTRGGFGVFLGVTLPARGEGAEEMALSSPAQRRKPSISIR 152 P R +G RTRG + VTL A++ P ++ KP +IR Sbjct: 63 PARLTGTRTRGEAEARVEVTLMEPAAAGGWRAMAKPLRKLKPGETIR 109
>GLGA_PSEPK (Q88FN9) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 519 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -3 Query: 238 VTLPARGEGAEEMALSSPAQRRKPSISIRARFSEMRASRM 119 + + RGE EE A+ A R I +R F+E A RM Sbjct: 367 IAIIGRGEPEEEQAMRELALRHPGRIGVRIGFNETDARRM 406
>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1615 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%) Frame = +3 Query: 198 AISSAPSPRAGSVTPRKTPKP-----PRVLTPLRRSGRL 299 A ++ P G PR P P PRV PLR+ GRL Sbjct: 452 AAAAQPPTEHGPPPPRPAPGPAEPPEPRVPEPLRKQGRL 490
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 28.1 bits (61), Expect = 5.8 Identities = 19/67 (28%), Positives = 30/67 (44%) Frame = +3 Query: 114 ESIRDARISENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSG 293 E DA+ ++ AR ++ + E + AP P+ G P+ TP P + + G Sbjct: 54 EPADDAKAAKPAARKSQTSSKKTSKETTTAKPAPGPKPGP-GPKPTPGPRPGSSSGPKPG 112 Query: 294 RLIAAAT 314 R AA T Sbjct: 113 RSSAART 119
>HISX_PROMM (Q7V5N9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 442 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = -3 Query: 295 RPERRSGVRTRGGFGVFLGVTL----PARGEGAEEMALSSPAQR 176 RP +++G+ GG + L PA+ G E++ ++SPA R Sbjct: 134 RPVQKAGIYIPGGRAAYPSTVLMNAVPAQVAGVEQLVMTSPAGR 177
>HISX_SYNPX (Q7U8K7) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 437 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = -3 Query: 295 RPERRSGVRTRGGFGVFLGVTL----PARGEGAEEMALSSPA 182 RP +R+G+ GG + L PAR G E++ + SPA Sbjct: 129 RPVQRAGLYVPGGRAAYPSTVLMNAVPARVAGVEQVVICSPA 170
>HISX_CAMJR (Q5HSJ3) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 428 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Frame = -3 Query: 301 IRRPERRSGVRTRGG----FGVFLGVTLPARGEGAEEMALSSPAQ 179 + RP + G+ GG F L + +PA+ G E++ L+SPA+ Sbjct: 117 LTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPAK 161
>HISX_CAMJE (Q9PM77) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 428 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Frame = -3 Query: 301 IRRPERRSGVRTRGG----FGVFLGVTLPARGEGAEEMALSSPAQ 179 + RP + G+ GG F L + +PA+ G E++ L+SPA+ Sbjct: 117 LTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPAK 161
>K0853_HUMAN (Q5T200) Protein KIAA0853| Length = 1668 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +3 Query: 204 SSAPSPRAGSVTPRKTPKPPRVLTPLRRSGR 296 S++P P +P++ PPR +P+R GR Sbjct: 370 SASPYPSHSLSSPQRKQSPPRHRSPMREKGR 400
>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1544 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +3 Query: 189 ELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRL 299 ++S S +P S+ RK+PK PR L RS RL Sbjct: 532 KISRASKSPKLPRISIEARKSPKLPRAAQELSRSPRL 568
>ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing protein 34| Length = 500 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = -3 Query: 304 AIRRPERRSGVRTRGGFGVFLGVTLPARGEGAEEMALSSPAQRRKPSISIRARFSE 137 A PE R+GV+ F + ++ P +G + A S PS ++R+R E Sbjct: 141 AEENPESRNGVKDSSFFANPVEISPPYCSQGRQPTASSDLRMETTPSKALRSRLQE 196
>GLGA_PSEPF (Q3KD65) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 487 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -3 Query: 238 VTLPARGEGAEEMALSSPAQRRKPSISIRARFSEMRASRM 119 + + RGE EE A+ A R I +R F+E A RM Sbjct: 333 IAIIGRGEPEEEQAMRELALRFPGQIGVRIGFNETDARRM 372
>ZBP1_HUMAN (Q9H171) Z-DNA-binding protein 1 (Tumor stroma and activated| macrophage protein DLM-1) Length = 429 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = -3 Query: 244 LGVTLPARGEGAEEMALSSPAQR 176 LG T P GEG E+ALSSPA+R Sbjct: 68 LGGTDP-EGEGPAELALSSPAER 89
>ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 252 Score = 27.3 bits (59), Expect = 9.9 Identities = 19/49 (38%), Positives = 22/49 (44%) Frame = +3 Query: 138 SENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLR 284 +E+LAR+ LRR GE AP P A TP P TP R Sbjct: 141 AEHLARLR---LRRAGGE-----GAPEPPATPATPATPATPATPATPAR 181
>SEM6A_HUMAN (Q9H2E6) Semaphorin-6A precursor (Semaphorin VIA) (Sema VIA)| (Semaphorin 6A-1) (SEMA6A-1) Length = 1030 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 237 TPRKTPKPPRVLTPLRRSGRL 299 T K PKP +LTPL +G+L Sbjct: 712 TQSKDPKPEAILTPLMHNGKL 732
>CIC_HUMAN (Q96RK0) Protein capicua homolog| Length = 1608 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 192 LSAISSAPSPRAGSVTPRKTPKP 260 L ++ SAP P+A SV+P + P P Sbjct: 889 LQSVPSAPPPKAQSVSPVQAPPP 911
>ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 245 Score = 27.3 bits (59), Expect = 9.9 Identities = 19/49 (38%), Positives = 22/49 (44%) Frame = +3 Query: 138 SENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLR 284 +E+LAR+ LRR GE AP P A TP P TP R Sbjct: 134 AEHLARLR---LRRAGGE-----GAPKPPATPATPATPATPATPATPAR 174
>VGLG_BRSV7 (Q65706) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 257 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 7/42 (16%) Frame = +3 Query: 180 CAGELSAIS-------SAPSPRAGSVTPRKTPKPPRVLTPLR 284 C G L+ +S APS RA ++T +KTPKP P++ Sbjct: 176 CEGNLACLSLCQVGPGRAPS-RAPTITLKKTPKPKTTKRPIK 216
>SEM6A_MOUSE (O35464) Semaphorin-6A precursor (Semaphorin VIA) (Sema VIA)| (Semaphorin 6A-1) (SEMA6A-1) (Semaphorin Q) (Sema Q) Length = 1031 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 237 TPRKTPKPPRVLTPLRRSGRL 299 T K PKP +LTPL +G+L Sbjct: 712 TQSKDPKPEAILTPLMHNGKL 732 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.121 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,094,974 Number of Sequences: 219361 Number of extensions: 443539 Number of successful extensions: 1856 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1751 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1852 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
