ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast72f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469521.1| Oryza sativa (japonica cultivar-group), mRNA 157 3e-35
2dbj|AK106258.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 84 3e-13
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 84 3e-13
5gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033... 84 3e-13
6gb|AY423269.1| Streptomyces diastaticus 108 cytochrome P450 mono... 40 4.1
7gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 4.1
8gb|AF459424.1| Rhodococcus sp. NCIMB 9784 flavin-type hydroxylas... 40 4.1
9dbj|AB180844.1| Nonomuraea recticatena moxA, moxB, moxR gene for... 40 4.1
10gb|AY957485.1| Rhodococcus ruber cytochrome P450 monooxygenase g... 40 4.1
11dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.1
12gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 4.1 
>ref|XM_469521.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 894

 Score =  157 bits (79), Expect = 3e-35
 Identities = 106/115 (92%)
 Strand = Plus / Plus

                                                                       
Query: 96  ggcgacaagtccgactacgagagcatccgcgatgcccgcatctcggagaacctggcccgg 155
           |||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||
Sbjct: 13  ggcggcaagtccgactacgagagcgtccgcgacgcccgcatctccgagaacctggcacgg 72

                                                                  
Query: 156 atggagatgctcggcttgcgccgctgcgccggggagctcagcgccatctcctccg 210
           ||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||
Sbjct: 73  atggagatgctcggcctgcgccgctgcgccggggagttcagtgccatcgcctccg 127



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 237 accccgagaaagaccccgaagccgccgcgggtcctcaccccgctccgccgctc 289
           |||||||| | || ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 181 accccgaggaggaaccccaagccgccgcgtgtcctcaccccgctccgccgctc 233
to top
>dbj|AK106258.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F02, full
           insert sequence
          Length = 1367

 Score =  157 bits (79), Expect = 3e-35
 Identities = 106/115 (92%)
 Strand = Plus / Plus

                                                                       
Query: 96  ggcgacaagtccgactacgagagcatccgcgatgcccgcatctcggagaacctggcccgg 155
           |||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||
Sbjct: 92  ggcggcaagtccgactacgagagcgtccgcgacgcccgcatctccgagaacctggcacgg 151

                                                                  
Query: 156 atggagatgctcggcttgcgccgctgcgccggggagctcagcgccatctcctccg 210
           ||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||
Sbjct: 152 atggagatgctcggcctgcgccgctgcgccggggagttcagtgccatcgcctccg 206



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 237 accccgagaaagaccccgaagccgccgcgggtcctcaccccgctccgccgctc 289
           |||||||| | || ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 260 accccgaggaggaaccccaagccgccgcgtgtcctcaccccgctccgccgctc 312
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 153      cggatggagatgctcggcttgcgccgctgcgccggggagctcagcgccatctcctccg 210
                |||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||
Sbjct: 28475303 cggatggagatgctcggcctgcgccgctgcgccggggagttcagtgccatcgcctccg 28475360



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                       
Query: 96       ggcgacaagtccgactacgagagcatccgcgatgcccgcatctcggagaacctgg 150
                |||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct: 28475124 ggcggcaagtccgactacgagagcgtccgcgacgcccgcatctccgagaacctgg 28475178



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                     
Query: 237      accccgagaaagaccccgaagccgccgcgggtcctcaccccgctccgccgctc 289
                |||||||| | || ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 28475414 accccgaggaggaaccccaagccgccgcgtgtcctcaccccgctccgccgctc 28475466
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 153      cggatggagatgctcggcttgcgccgctgcgccggggagctcagcgccatctcctccg 210
                |||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||
Sbjct: 28566627 cggatggagatgctcggcctgcgccgctgcgccggggagttcagtgccatcgcctccg 28566684



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                       
Query: 96       ggcgacaagtccgactacgagagcatccgcgatgcccgcatctcggagaacctgg 150
                |||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct: 28566448 ggcggcaagtccgactacgagagcgtccgcgacgcccgcatctccgagaacctgg 28566502



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                     
Query: 237      accccgagaaagaccccgaagccgccgcgggtcctcaccccgctccgccgctc 289
                |||||||| | || ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 28566738 accccgaggaggaaccccaagccgccgcgtgtcctcaccccgctccgccgctc 28566790
to top
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
             sequence
          Length = 143681

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 153   cggatggagatgctcggcttgcgccgctgcgccggggagctcagcgccatctcctccg 210
             |||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||
Sbjct: 69433 cggatggagatgctcggcctgcgccgctgcgccggggagttcagtgccatcgcctccg 69490



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                    
Query: 96    ggcgacaagtccgactacgagagcatccgcgatgcccgcatctcggagaacctgg 150
             |||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct: 69254 ggcggcaagtccgactacgagagcgtccgcgacgcccgcatctccgagaacctgg 69308



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 237   accccgagaaagaccccgaagccgccgcgggtcctcaccccgctccgccgctc 289
             |||||||| | || ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 69544 accccgaggaggaaccccaagccgccgcgtgtcctcaccccgctccgccgctc 69596
to top
>gb|AY423269.1| Streptomyces diastaticus 108 cytochrome P450 monooxygenase (mnp1),
            type I polyketide synthase (mnp2), and cytochrome P450
            monooxygenase (mnp3) genes, complete cds
          Length = 13513

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  agaacctggcccggatggag 161
            ||||||||||||||||||||
Sbjct: 1161 agaacctggcccggatggag 1180
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 142     agaacctggcccggatggagatgc 165
               ||||||||||||| ||||||||||
Sbjct: 2037564 agaacctggcccgcatggagatgc 2037587
to top
>gb|AF459424.1| Rhodococcus sp. NCIMB 9784 flavin-type hydroxylase and cytochrome
            P450 RhF (P450RhF) genes, complete cds
          Length = 4411

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 142  agaacctggcccggatggagatgc 165
            ||||||||||||| ||||||||||
Sbjct: 2907 agaacctggcccgcatggagatgc 2930
to top
>dbj|AB180844.1| Nonomuraea recticatena moxA, moxB, moxR gene for cytochrome P450 type
            compactin 3'',4''-hydroxylase, ferredoxin, hypothetical
            transcriptional regulator, complete cds
          Length = 2696

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  agaacctggcccggatggag 161
            ||||||||||||||||||||
Sbjct: 1388 agaacctggcccggatggag 1407
to top
>gb|AY957485.1| Rhodococcus ruber cytochrome P450 monooxygenase gene, complete cds
          Length = 2454

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 142  agaacctggcccggatggagatgc 165
            ||||||||||||| ||||||||||
Sbjct: 1227 agaacctggcccgcatggagatgc 1250
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 146     cctggcccggatggagatgc 165
               ||||||||||||||||||||
Sbjct: 3588924 cctggcccggatggagatgc 3588905
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    tacgagagcatccgcgatgc 130
              ||||||||||||||||||||
Sbjct: 455339 tacgagagcatccgcgatgc 455320


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,224,431
Number of Sequences: 3902068
Number of extensions: 1224431
Number of successful extensions: 23711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23512
Number of HSP's gapped (non-prelim): 199
length of query: 315
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 293
effective length of database: 17,147,199,772
effective search space: 5024129533196
effective search space used: 5024129533196
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top