>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 464

 Score =  162 bits (410), Expect = 3e-40
 Identities = 77/119 (64%), Positives = 89/119 (74%)
 Frame = +1

Query: 79  GSKPGSGGAATAQNEAIDXXXXXXXXXXXTIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 258
           G K GSGG A++     D           TID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8   GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67

Query: 259 NYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNKRKLAPRKSVKIGRPGYTXTKQYDPD 435
           +YLAHTQGK+HQTNLA+RAA+EAK+APAQP P K K+  +K VKIGRPGY  TKQ D +
Sbjct: 68  SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDSE 126

>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 475

 Score =  160 bits (406), Expect = 1e-39
 Identities = 76/119 (63%), Positives = 89/119 (74%)
 Frame = +1

Query: 79  GSKPGSGGAATAQNEAIDXXXXXXXXXXXTIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 258
           G K GSGG A++     D           TID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8   GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67

Query: 259 NYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNKRKLAPRKSVKIGRPGYTXTKQYDPD 435
           +YLAHTQGK+HQTNLA+RAA+EAK+APAQP P + K+  +K VKIGRPGY  TKQ D +
Sbjct: 68  SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEQVKVEVKKFVKIGRPGYKVTKQRDTE 126

>PRP11_YEAST (Q07350) Pre-mRNA-splicing factor PRP11|
          Length = 266

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
 Frame = +1

Query: 79  GSKPGSGGAATA------QNEAIDXXXXXXXXXXXTIDLAKD------PYFMRNHLGSYE 222
           GSK G GG A+       + + ++           T    KD      PY  +NH G   
Sbjct: 8   GSKKGGGGIASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLV 67

Query: 223 CKLCLTLHNNEGNYLAHTQGKRHQTNLAKR 312
           CKLC T+H +  +   H  GK+H  N+ +R
Sbjct: 68  CKLCNTMHMSWSSVERHLGGKKHGLNVLRR 97

>CCD16_HUMAN (Q96NB3) Coiled-coil domain-containing protein 16|
          Length = 372

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
 Frame = +1

Query: 181 KDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAK----RAAREAKDAPAQP 348
           + P+   N LG   C LC T   +E  +  H  GK+H+  +A+    + A +   A + P
Sbjct: 39  ESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAELKGAKEASQGSSASSAP 98

Query: 349 QPNKRKLAPRKSVKIGRPGYTXTKQYDPDT 438
           Q  KRK        + R   T   Q  P T
Sbjct: 99  QSVKRKAPDADDQDVKRAKATLVPQVQPST 128

>CCD16_RAT (Q3MHS2) Coiled-coil domain-containing protein 16|
          Length = 370

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 181 KDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAK----RAAREAKDAPAQP 348
           + P+   N LG   C LC T   +E  +  H  GK+H+  +A+    + A +   A   P
Sbjct: 39  ESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELKGAKGATQGPSAGTAP 98

Query: 349 QPNKRK 366
           QP KRK
Sbjct: 99  QPTKRK 104

>CCD16_MOUSE (Q8R1N0) Coiled-coil domain-containing protein 16 (Ovus mutant|
           candidate gene 1 protein)
          Length = 363

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +1

Query: 181 KDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAK-RAAREAKDAPAQ---P 348
           + P+   N LG   C LC T   +E  +  H  GK+H+  +A+ + A+ A   P+    P
Sbjct: 39  ESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELKGAKGATQGPSTGTVP 98

Query: 349 QPNKRKLAPRKSVKIGRPGYTXTKQYDPDT 438
           Q  KR+    +S    +   +   Q  P T
Sbjct: 99  QATKRRATDVESQDAKKAKASAGPQVQPST 128

>ZMAT2_MOUSE (Q9CPW7) Zinc finger matrin type 2|
          Length = 199

 Score = 35.8 bits (81), Expect = 0.049
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 199 RNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNL--AKRAAREAKD-APAQPQPNKRKL 369
           ++ +G Y C +C  +  +  N+L H  GK+HQ NL  + R  R   D    + + NK+K+
Sbjct: 74  QSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVNKKKM 133

Query: 370 APRK 381
             ++
Sbjct: 134 EEKQ 137

>ZMAT2_HUMAN (Q96NC0) Zinc finger matrin type 2|
          Length = 199

 Score = 35.8 bits (81), Expect = 0.049
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 199 RNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNL--AKRAAREAKD-APAQPQPNKRKL 369
           ++ +G Y C +C  +  +  N+L H  GK+HQ NL  + R  R   D    + + NK+K+
Sbjct: 74  QSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVNKKKM 133

Query: 370 APRK 381
             ++
Sbjct: 134 EEKQ 137

>ZN346_PONPY (Q5R4W8) Zinc finger protein 346|
          Length = 310

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 217 YECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQP 354
           Y CK C  + N+   Y AH  G +H+    K  A      P Q QP
Sbjct: 255 YPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQP 300



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 220 ECKLCLTLHNNEGNYLAHTQGKRHQTNLAKR 312
           +CK+C  L  +E   LAH Q K+H  N  KR
Sbjct: 74  QCKVCCALLISESQKLAHYQSKKH-ANKVKR 103

>ZN346_HUMAN (Q9UL40) Zinc finger protein 346 (Just another zinc finger protein)|
          Length = 294

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 217 YECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQP 354
           Y CK C  + N+   Y AH  G +H+    K  A      P Q QP
Sbjct: 239 YPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQP 284



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 220 ECKLCLTLHNNEGNYLAHTQGKRHQTNLAKR 312
           +CK+C  L  +E   LAH Q K+H  N  KR
Sbjct: 74  QCKVCCALLISESQKLAHYQSKKH-ANKVKR 103

>ZN346_MOUSE (Q9R0B7) Zinc finger protein 346 (Just another zinc finger protein)|
          Length = 294

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 217 YECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNKR 363
           Y CK C  + N+   Y AH  G +H+    K         P Q QP  +
Sbjct: 239 YPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTLVTLGSQTPVQTQPTPK 287



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 214 SYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKR 312
           S +CK+C  +  +E   LAH Q K+H  N  KR
Sbjct: 72  STQCKVCCAMLISESQKLAHYQSKKH-ANKVKR 103

>ZBTB3_HUMAN (Q9H5J0) Zinc finger and BTB domain-containing protein 3|
          Length = 574

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +1

Query: 217 YECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAP---AQPQPNKRKLAPRKSV 387
           YEC+ CL  +   G+   H + K H  +LAKR+  + +  P    QP P     A R+S 
Sbjct: 500 YECRYCLRSYTQSGDLYRHIR-KAHNEDLAKRSKPDPEVGPLLGVQPLPGS-PTADRQSS 557

Query: 388 KIGRP 402
             G P
Sbjct: 558 SGGGP 562

>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3223

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 283 KRHQTNLAKRAAREAKDAPAQPQPNKRKLAPRKSVKIGR 399
           +R + +L  + A EA   PAQP P+K  L P  S ++G+
Sbjct: 280 RREEPDLQPQLASEAPRRPAQPPPSKSALLPPPSPRVGK 318

>HMGN2_CHICK (P02314) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 307 KRAAR-EAKDAPAQPQPNKRKLAPRKSVKI 393
           +R+AR  AK AP +P+P  +K AP+KS K+
Sbjct: 22  RRSARLSAKPAPPKPEPKPKKAAPKKSEKV 51

>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2|
          Length = 902

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +1

Query: 244 HNNEGNYLAHTQGKRH--QTNLAKRAAREAKDAPAQPQPNKRKLAPRKSVKIGRPGYTXT 417
           H +E    A T+ K+   +      AAR A  APA P P     A R      RPG T  
Sbjct: 156 HEDEAKRKAETEAKKRFGEGEQPASAARPATAAPAAPAPRPGAPAARPGTTTTRPGTTTA 215

Query: 418 K 420
           +
Sbjct: 216 R 216

>KPC1_YEAST (P24583) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)|
          Length = 1151

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 265 LAHTQGKRHQTNLAKRAAREAKDAPAQPQPNKRKLAPRKSVKIGRPGYTXTKQYDP 432
           L  + G  + ++L+     E  +AP  PQP K    P    K+GR   + TKQ+DP
Sbjct: 564 LGSSIGTANGSDLSPSKLAERANAPLPPQPRKHDKTPSPQ-KVGRD--SPTKQHDP 616

>YDCP_ECOLI (P76104) Putative protease ydcP precursor (EC 3.4.-.-)|
          Length = 653

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 208 LGSYECKLCLTLHNNEGNYLAHT-QGKRHQTNLAKRAAREAKDAPAQPQPNKRKLAPRKS 384
           LG ++ +L LTL + EG  + HT  G+  + N A++A    KD  A+     + L   + 
Sbjct: 417 LGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAK---LGQTLYYARD 473

Query: 385 VKIGRPG 405
           V+I  PG
Sbjct: 474 VQINLPG 480

>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11|
          Length = 1644

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 217 YECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNKRKLA 372
           Y CKLCL    N      H + KRH+ N+ ++  +E  +  + P P+   LA
Sbjct: 304 YLCKLCLIHIENIQGAHKHIKEKRHKKNILEK--QEESELRSLPPPSPAHLA 353

>HM14A_CHICK (P12902) Nonhistone chromosomal protein HMG-14A|
          Length = 104

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 268 AHTQGKRHQTNLAKRAAREAKDAPAQPQPNKRKLAPRK 381
           A  +G+  +    + A   AK AP +P+P  +K AP+K
Sbjct: 5   APAEGEAKEEPKRRSARLSAKPAPPKPEPKPKKAAPKK 42

>BSU1_SCHPO (P33532) Vitamin B6 transporter bsu1 (Vitamin B6 uptake protein 1)|
           (Changed amiloride resistance protein 1) (Amiloride
           transporter car1)
          Length = 526

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 437 VSGSYCLVXVYPGLPIL--TDLRGASLRLFGWGCAG 336
           V+GS  L  V  G+P L   D  G  + LF W CAG
Sbjct: 182 VAGSTALTNVAGGIPDLFPEDTAGVPMSLFVWACAG 217

>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 211  GSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPA 342
            GSY C  C +    E     H +   H+     RAAR AK+ P+
Sbjct: 3550 GSYHCLACESALCGEEALSQHLESALHKHRTITRAARNAKEHPS 3593

>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3703

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 211  GSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPA 342
            GSY C  C +    E     H +   H+     RAAR AK+ P+
Sbjct: 3527 GSYHCLACESALCGEEALSQHLESALHKHRTITRAARNAKEHPS 3570

>ZBTB3_MOUSE (Q91X45) Zinc finger and BTB domain-containing protein 3|
          Length = 518

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 217 YECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRA 315
           YEC+ CL  +   G+   H + K H  +LAKR+
Sbjct: 446 YECRYCLRSYTQSGDLYRHIR-KAHNEDLAKRS 477

>YO14_CAEEL (P34670) Putative zinc finger protein ZK686.4|
          Length = 407

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 211 GSYECKLCLTLHNNEGNYLAHTQGKRHQTNL 303
           G + C +C  +  +  N+L H  GK HQ N+
Sbjct: 278 GGFYCDVCDCVVKDSINFLDHINGKNHQRNI 308

>ZBT7B_MOUSE (Q64321) Zinc finger and BTB domain-containing protein 7B (Zinc|
           finger protein 67) (Zfp-67) (Zinc finger protein Th-POK)
           (T-helper-inducing POZ/Kruppel-like factor)
           (Kruppel-related zinc finger protein cKrox) (c-Krox)
          Length = 544

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
 Frame = +1

Query: 190 YFMRNHLG------SYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKD---APA 342
           Y ++NH+        YEC LC      E +   H +G   Q  L  R  R  KD   AP 
Sbjct: 419 YDLKNHMHLHTGDRPYECHLCHKAFAKEDHLQRHLKG---QNCLEVRTRRRRKDDVAAPH 475

Query: 343 QPQPNKRKLAP 375
            P P+    +P
Sbjct: 476 YPPPSTTTSSP 486

>CIZ1_HUMAN (Q9ULV3) Cip1-interacting zinc finger protein (Nuclear protein|
           NP94)
          Length = 898

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 217 YECKLCLTL-HNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNKRKLA 372
           Y C++C    H+N G  L+H +   H  NL K  A  AK+     +P  R+ A
Sbjct: 799 YICRICHKFYHSNSGAQLSHCKSLGHFENLQKYKA--AKNPSPTTRPVSRRCA 849

>SEM6B_MOUSE (O54951) Semaphorin-6B precursor (Semaphorin VIB) (Sema VIB)|
           (Semaphorin N) (Sema N)
          Length = 886

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 301 LAKRAAREAKDAPAQPQPNKRKLAPRKSVKIGRPG-YTXTKQYDPD 435
           LA   A E    PA+P P  R  APR S +   PG +  T    PD
Sbjct: 754 LAPARASEQPQVPAEPGPESRLCAPR-SCRASHPGDFPLTPHASPD 798

>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6|
          Length = 1491

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 217 YECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNK 360
           Y CKLC  L ++      H + KRH+ NL ++   E       P P++
Sbjct: 244 YTCKLCDALIDSIPFAHKHIKEKRHKKNLKEKQEEELLTTLPPPAPSQ 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.128    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,290,543
Number of Sequences: 219361
Number of extensions: 646330
Number of successful extensions: 2066
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2063
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)