>Y4967_ARATH (Q9SZ83) Probable oxidoreductase At4g09670 (EC 1.-.-.-)|
          Length = 362

 Score =  122 bits (306), Expect = 2e-28
 Identities = 56/103 (54%), Positives = 70/103 (67%)
 Frame = +3

Query: 51  VGSRSEAKARLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARG 230
           V SRS  KA+ FA  N  P  T++HGSYE+LL+DP +DA+Y+PLPTSLHV+WA  AA +G
Sbjct: 36  VASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKG 95

Query: 231 KHVLLEKPTXXXXXXXXXXXXXXXXSGVQFMDSTMWMHHPRTA 359
           KH+LLEKP                 +GVQ MD TMW+H+PRTA
Sbjct: 96  KHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHNPRTA 138

>YMO1_RHIME (P49305) Hypothetical 36.4 kDa protein in mocC-mocA intergenic|
           region (ORF334)
          Length = 334

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 38/101 (37%), Positives = 52/101 (51%)
 Frame = +3

Query: 51  VGSRSEAKARLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARG 230
           + SR   +AR  A   G+    R +GSY+ +L DP ++AVY+PLP  LHV WA  AA  G
Sbjct: 34  IASRDLDRARAAATRFGIG---RSYGSYDEILADPEIEAVYIPLPNHLHVHWAIRAAEAG 90

Query: 231 KHVLLEKPTXXXXXXXXXXXXXXXXSGVQFMDSTMWMHHPR 353
           KHVL EKP                 +G +  ++ M   HP+
Sbjct: 91  KHVLCEKPLALDVEELSRLIDCRDRTGRRIQEAVMIRAHPQ 131

>GFO_ZYMMO (Q07982) Glucose--fructose oxidoreductase precursor (EC 1.1.99.28)|
           (GFOR)
          Length = 433

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
 Frame = +3

Query: 57  SRSEAKARLFAADNGL-PADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGK 233
           S +  KA++ AA+ G+ P     + +++ +  DP +DAVY+ LP SLH ++A  A   GK
Sbjct: 116 SGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGK 175

Query: 234 HVLLEKP 254
           HV+ EKP
Sbjct: 176 HVMCEKP 182

>CBAC_COMTE (Q44258) 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene|
           dehydrogenase (EC 1.-.-.-)
          Length = 397

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 26/59 (44%), Positives = 32/59 (54%)
 Frame = +3

Query: 78  RLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLLEKP 254
           R F AD   PA   +HG  E+L  +P V+ VY+  P   H   A  A   GKHVL+EKP
Sbjct: 39  RQFKAD--FPA-AAVHGDIESLCKNPDVEVVYIGTPHQFHAVHAEIALNAGKHVLVEKP 94

>Y816_SYNY3 (P74041) Hypothetical oxidoreductase sll0816 (EC 1.-.-.-)|
          Length = 371

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 28/65 (43%), Positives = 34/65 (52%)
 Frame = +3

Query: 60  RSEAKARLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHV 239
           R  AKA+  A  N L      + + E LL +P V AV +  P  LH + A  A   GKHV
Sbjct: 39  RDLAKAQEVAKSNDLAYS---YNNLEELLANPEVQAVTIASPPFLHYEMAKQAILAGKHV 95

Query: 240 LLEKP 254
           LLEKP
Sbjct: 96  LLEKP 100

>YISS_BACSU (P40332) Hypothetical oxidoreductase yisS (EC 1.-.-.-)|
          Length = 342

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 31/106 (29%), Positives = 44/106 (41%)
 Frame = +3

Query: 51  VGSRSEAKARLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARG 230
           VG   + +A   A + G+  +      YE +L+DP +DAV +  PTS H      AA  G
Sbjct: 35  VGDPLKGRAEQVARELGI--EKWSEDPYE-VLEDPGIDAVIIVTPTSTHGDMIIKAAENG 91

Query: 231 KHVLLEKPTXXXXXXXXXXXXXXXXSGVQFMDSTMWMHHPRTADAR 368
           K + +EKP                 +GV      M    P  ADA+
Sbjct: 92  KQIFVEKPLTLSLEESKAASEKVKETGVICQVGFMRRFDPAYADAK 137

>YRBE_BACSU (O05389) Hypothetical oxidoreductase yrbE (EC 1.-.-.-)|
          Length = 341

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 132 YEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLLEKP 254
           Y  LL DP +DA+++  PT++H Q    AA   KH+  EKP
Sbjct: 58  YRDLLHDPDIDAIFICSPTAVHAQMIKEAAEAKKHIFCEKP 98

>PHT4_PSEPU (Q05184) Putative 4,5,-dihydroxyphthalate dehydrogenase (EC|
           1.-.-.-) (DHP dehydrogenase)
          Length = 410

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 25/63 (39%), Positives = 31/63 (49%)
 Frame = +3

Query: 66  EAKARLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLL 245
           E   R F  D   PA    + + E L  D  VDA+Y+  P   H +    AAA  KHVL+
Sbjct: 46  EQARRQFERDFDAPA----YETIEDLAADSNVDALYIASPHQFHAEHTRIAAANRKHVLV 101

Query: 246 EKP 254
           EKP
Sbjct: 102 EKP 104

>YULF_BACSU (O05265) Hypothetical oxidoreductase yulF (EC 1.-.-.-)|
          Length = 328

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 27/93 (29%), Positives = 37/93 (39%)
 Frame = +3

Query: 51  VGSRSEAKARLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARG 230
           V SRS  +A  FAA +            + +      DAVY+  P +LH + A      G
Sbjct: 31  VYSRSAERAGEFAAKHNA---AHAFSDLQEMAASDCFDAVYIASPNALHKEQAVLFMNHG 87

Query: 231 KHVLLEKPTXXXXXXXXXXXXXXXXSGVQFMDS 329
           KHVL EKP                 +GV  M++
Sbjct: 88  KHVLCEKPFASNTKETEEMISAAKANGVVLMEA 120

>YVAA_BACSU (O32223) Hypothetical oxidoreductase yvaA (EC 1.-.-.-)|
          Length = 358

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 111 DTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLLEKP 254
           D  +    E + +DPA++ V +  P+ LH +   A    GKHV++EKP
Sbjct: 58  DAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKP 105

>YDGJ_ECOLI (P77376) Hypothetical oxidoreductase ydgJ (EC 1.-.-.-)|
          Length = 346

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 141 LLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLLEKP 254
           L +DP +D + +P P   H   A AA   GKHV+++KP
Sbjct: 59  LFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKP 96

>YM94_YEAST (Q04869) Hypothetical 38.2 kDa protein in PRE5-FET4 intergenic|
           region
          Length = 349

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 22/66 (33%), Positives = 36/66 (54%)
 Frame = +3

Query: 57  SRSEAKARLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKH 236
           +R +AKA  FA    +P + +++ + + +L+DP VD +   LP   +      A   GK 
Sbjct: 37  NRHKAKALDFAKVADIP-ENKVYDNLDEILNDPHVDYIDALLPAQFNADIVEKAVKAGKP 95

Query: 237 VLLEKP 254
           V+LEKP
Sbjct: 96  VILEKP 101

>YGJR_ECOLI (P42599) Hypothetical oxidoreductase ygjR (EC 1.-.-.-)|
          Length = 328

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 25/68 (36%), Positives = 35/68 (51%)
 Frame = +3

Query: 51  VGSRSEAKARLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARG 230
           V SRS  +A+ FA D  +     L  S EA+ +  A+DAVY+  P SLH        +  
Sbjct: 31  VYSRSLEQAQHFANDFSVE---HLFTSLEAMAESDAIDAVYIASPNSLHFSQTQLFLSHK 87

Query: 231 KHVLLEKP 254
            +V+ EKP
Sbjct: 88  INVICEKP 95

>YEG9_SCHPO (O13991) Hypothetical oxidoreductase C26H5.09c (EC 1.-.-.-)|
          Length = 369

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 24/64 (37%), Positives = 36/64 (56%)
 Frame = +3

Query: 63  SEAKARLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVL 242
           +E+KAR  AA   +   T+L    + LL D  ++ V + LP ++H +  + A   GKHVL
Sbjct: 43  TESKAR--AAFPNVKVYTKL----DELLADSNIELVVISLPPNVHYEVVSQALNAGKHVL 96

Query: 243 LEKP 254
            EKP
Sbjct: 97  CEKP 100

>YJHC_ECOLI (P39353) Hypothetical oxidoreductase yjhC (EC 1.-.-.-)|
          Length = 372

 Score = 34.7 bits (78), Expect = 0.058
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = +3

Query: 129 SYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLLEKPTXXXXXXXXXXXXXXXXS 308
           S +AL+    VD V +  P  LH +    AA   KHV  EKP                 +
Sbjct: 51  SLDALVSSKLVDCVIVATPNYLHKEPVIKAAKNKKHVFCEKPIALSYEDCVDMVKACKEA 110

Query: 309 GVQFM 323
           GV FM
Sbjct: 111 GVTFM 115

>MOCA_RHIME (P49307) Rhizopine catabolism protein mocA (EC 1.-.-.-)|
          Length = 317

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +3

Query: 69  AKARLFAADNGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLLE 248
           A +RL  A NG+    + + +   +++   VD V +  P++ HV      AARG  +L E
Sbjct: 38  AASRLNLAGNGI----KTYETAGDMIEAGEVDGVLIATPSNTHVDTVADIAARGLPILCE 93

Query: 249 KP 254
           KP
Sbjct: 94  KP 95

>Y1686_STRPN (Q54728) Hypothetical oxidoreductase SP1686 (EC 1.-.-.-)|
          Length = 367

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 117 RLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLLEKP 254
           ++  S + L+    VD V +  P +LH +    AA  GK+V  EKP
Sbjct: 47  KVASSLDELVSSDEVDCVIVATPNNLHKEPVIKAAQHGKNVFCEKP 92

>YBQ3_SCHPO (O42896) Hypothetical oxidoreductase C115.03 (EC 1.-.-.-)|
          Length = 368

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 120 LHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLLEKP 254
           ++ + + LL D  ++ V + LP ++H +    A   GKHV+ EKP
Sbjct: 56  VYTNLDELLADVNIELVVVSLPPNVHSEIVKKALNAGKHVVCEKP 100

>GAL_PSEFL (P11886) Galactose 1-dehydrogenase (EC 1.1.1.48)|
          Length = 304

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 135 EALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLLEKP 254
           E L + P VDA+    P          A A GKHVL+EKP
Sbjct: 52  ELLENGPPVDAIAFCTPPQGRFALVQQALAAGKHVLVEKP 91

>YHHX_ECOLI (P46853) Putative oxidoreductase yhhX (EC 1.-.-.-)|
          Length = 345

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 135 EALLDDPAVDAVYLPLPTSLHVQWATAAAARGKHVLLEKP 254
           + +L+DP V  V +      H ++A  A   GK+VL+EKP
Sbjct: 58  DEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKP 97

>RSSA_CICAR (O65751) 40S ribosomal protein SA (p40)|
          Length = 300

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 96  NGLPADTRLHGSYEALLDDPAVDAVYLPLPTSLHVQWATAAAARG 230
           + +P+D    G + A +D P  DAV  P+P    V WA   A  G
Sbjct: 234 SAIPSD----GQWPAAIDQPWNDAVPQPIPAVPAVNWAAPEAVAG 274

>MI2D_RHIME (O68965) Inositol 2-dehydrogenase (EC 1.1.1.18)|
          Length = 330

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
 Frame = +3

Query: 69  AKARLFAADNGLPADTR-LHGSY-------EALLDDPAVDAVYLPLPTSLHVQWATAAAA 224
           A ARL A  +  PA    + G+Y       +A+     +DAV +  PT  H       A 
Sbjct: 25  ADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPTDTHADLIERFAR 84

Query: 225 RGKHVLLEKP 254
            GK +  EKP
Sbjct: 85  AGKAIFCEKP 94

>SYA_CHLTE (Q8KG04) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 885

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 224 RGGGGGPLHVEAGGERQVDGVDGRVVEERLVGAVKTSVR 108
           +GGGGG L +   G ++  G+D  +  E  V +VK++++
Sbjct: 849 KGGGGGKLELATAGGKEPAGIDKAI--EVFVASVKSALQ 885

>DXR_CHRVO (Q7NVY8) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 394

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
 Frame = +3

Query: 63  SEAKARLFA--ADNGLPADTRLHGSYEALLDD---PAVDAVYLPLPTSLHVQWATAAAAR 227
           ++A ARL A  A+ GL ++  LHG+ +AL+     P VDAV   +  +  +  A AAA  
Sbjct: 62  ADAAARLRARLAEAGLRSEV-LHGA-DALVQVAALPEVDAVMASIVGAAGLPSALAAARA 119

Query: 228 GKHVLL 245
           GK +LL
Sbjct: 120 GKRILL 125

>RNPH_SHEON (Q8E9L4) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 237

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 376 GGGRASAVRGWCIHMVESMNW 314
           GG R +++ G C+ +V+++NW
Sbjct: 123 GGTRTASITGACVALVDALNW 143

>RNPH_IDILO (Q5QYL5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 237

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 376 GGGRASAVRGWCIHMVESMNW 314
           GG R +++ G C+ +V+++NW
Sbjct: 123 GGTRTASITGACVALVDALNW 143

>Y4OX_RHISN (P55609) Hypothetical 39.9 kDa protein y4oX|
          Length = 360

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 162 DAVYLPLPTSLHVQWATAAAARGKHVLLEKP 254
           D   + +P +LH      A ARG H+L EKP
Sbjct: 72  DFCTIVIPPALHEGIVDLALARGMHILSEKP 102

>SYA_METKA (Q8TWY1) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 915

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 221 GGGGGPLHVEAGGERQVDGVDGRVVEERLVGAVKTSVRG 105
           GGGGG   +  GG R  DG    + E+RLV  V+    G
Sbjct: 881 GGGGGDERLAQGGGRNPDG----LTEDRLVEIVEDLAGG 915

>PURL_ARCFU (O28339) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 765

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 236 VLAPRGGGGGPLHVEAGGERQVDGVDG 156
           ++  R GG G L V AGG+   DG+ G
Sbjct: 226 IIHSRAGGAGDLFVLAGGKTGRDGIHG 252

>VG10_BPP22 (P26749) Packaged DNA stabilization protein gp10|
          Length = 472

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 215 GGGPLHVEAGGERQVDGVDGRVVEERLVGAVKT 117
           G G + +  G   Q  GV+G++VE R  G VKT
Sbjct: 91  GSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKT 123

>CPPM_DIACA (Q05957) Putative carboxyvinyl-carboxyphosphonate phosphorylmutase|
           (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate
           phosphonomutase) (CPEP phosphonomutase) (PSR132)
          Length = 318

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 218 GGGGPLHVEAGGERQVD-GVDGRVVEERLVGAVKTSVRGEAVVGGEE 81
           GGGGPL+V+      +  G  G  +E+++       +RG+AVV  EE
Sbjct: 111 GGGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEE 157


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,879,066
Number of Sequences: 219361
Number of extensions: 371992
Number of successful extensions: 1631
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)