ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast72d02 |
|---|---|
| Clone Library Name | barley_pub |
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 32.0 bits (71), Expect = 0.38 Identities = 26/88 (29%), Positives = 35/88 (39%) Frame = -1 Query: 305 QRFRRTVQKSRSTTCGARRGERESQXXXXXXXXXXXAPQ*CSQTTCAGGAHGRGHAQSGG 126 Q R+ Q SRS G+ G S S+ + G HG G QS Sbjct: 959 QHGSRSGQSSRSEQHGSSSGSSSSYGQHGSG----------SRQSLGHGQHGSGSGQSPS 1008 Query: 125 AWRPVAGRSGRGLRTATAPAPRRSGTGY 42 P GR G G +++ P RSG+G+ Sbjct: 1009 ---PSRGRHGSGSGQSSSYGPYRSGSGW 1033 Score = 30.8 bits (68), Expect = 0.85 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 167 AGGAHGRGHAQSGGAWRPVAGRSGRGLRTATAPAPRRSGTGY 42 +G + G G SG P +G+ G G +++ P SG+GY Sbjct: 420 SGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSGY 461 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = -1 Query: 182 SQTTCAGGAHGRGHAQSGGAWRPVAGRSGRGLRTATAPAPRRSGTGY 42 S+ + G HG G QS P GR G G +++ +P SG+G+ Sbjct: 2400 SRQSLGHGQHGSGSGQSPS---PSRGRHGSGSGQSSSYSPYGSGSGW 2443 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%) Frame = -1 Query: 182 SQTTCAGGAHGRGHAQSGGAWR--------PVAGRSGRGLRTATAPAPRRSGTG 45 S+++ G HG G QS G R P GR G GL +++ SG+G Sbjct: 1683 SRSSSRYGQHGSGSRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSG 1736 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = -1 Query: 182 SQTTCAGGAHGRGHAQSGGAWRPVAGRSGRGLRTATAPAPRRSGTGY 42 S+ + G HG G QS P GR G G +++ +P SG+G+ Sbjct: 1460 SRQSLGHGQHGSGSGQSPS---PSRGRHGSGSGQSSSYSPYGSGSGW 1503 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -1 Query: 182 SQTTCAGGAHGRGHAQSGGAWRPVAGRSGRGLRTATAPAPRRSGTGY 42 S+ + G HG G QS P GR G G +++ P SG+G+ Sbjct: 1930 SRQSLGHGQHGSGSGQSPS---PSRGRHGSGSGQSSSYGPYGSGSGW 1973 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 8/47 (17%) Frame = -1 Query: 161 GAHGRGHAQSGGAWR--------PVAGRSGRGLRTATAPAPRRSGTG 45 G HG G QS G R P GR G GL +++ SG+G Sbjct: 2630 GQHGSGSRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSG 2676 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 8/47 (17%) Frame = -1 Query: 161 GAHGRGHAQSGGAWR--------PVAGRSGRGLRTATAPAPRRSGTG 45 G HG G QS G R P GR G GL +++ SG+G Sbjct: 1220 GQHGSGSRQSSGHGRQGSGSGHSPSRGRHGSGLGHSSSHGQHGSGSG 1266
>PER_DROME (P07663) Period circadian protein (Clock-6 protein) (CLK-6)| Length = 1224 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/44 (50%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -1 Query: 167 AGGAHGRGHAQSGGAWRPVAGRSGRGLRTATAP---APRRSGTG 45 AGGA G G SGGA VAG G G A P A SGTG Sbjct: 854 AGGAVGTGGVGSGGA--GVAGGGGSGTGVAGTPEGRATTTSGTG 895
>HIC1_MOUSE (Q9R1Y5) Hypermethylated in cancer 1 protein (Hic-1)| Length = 892 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = -1 Query: 155 HGRGHAQSGGAWRPVAGRSGRGLRTAT 75 H RG GG + P GR GRGLR AT Sbjct: 316 HLRGGGSGGGGYAPY-GRPGRGLRAAT 341
>LSM11_HUMAN (P83369) U7 snRNA-associated Sm-like protein LSm11| Length = 360 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = -1 Query: 179 QTTCAGGAHGRGHAQ--SGGAWRPVA-GRSGRGLRTATAPAP 63 +T GG GRG A+ + G+ P A G SGR R APAP Sbjct: 64 RTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAP 105
>TLX2_HUMAN (O43763) T-cell leukemia homeobox protein 2 (Homeobox protein| Hox-11L1) (Neural crest homeobox protein) Length = 284 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -1 Query: 161 GAHGRGHAQSGGAWRPVAGRSGRGLRTATAPAPRRSGTG 45 G G+GH ++G G SG G + AP P SG G Sbjct: 38 GRGGQGHGENGAFSGGYHGASGYGPAGSLAPLPGSSGVG 76
>HIC1_HUMAN (Q14526) Hypermethylated in cancer 1 protein (Hic-1) (Zinc finger| and BTB domain-containing protein 29) Length = 733 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = -1 Query: 155 HGRGHAQSGGAWRPVAGRSGRGLRTAT 75 H RG GG + P GR GRGLR AT Sbjct: 157 HLRGGGGGGGGYAPY-GRPGRGLRAAT 182
>ZO3_MOUSE (Q9QXY1) Tight junction protein ZO-3 (Zonula occludens 3 protein)| (Zona occludens 3 protein) (Tight junction protein 3) Length = 905 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -1 Query: 176 TTCAGGAHGRGHAQSGGAWRPVAGRSGRGLR 84 T G G GH+ GG W +A R GR LR Sbjct: 496 TLYPGSGPGHGHSSHGGLW--LAARMGRDLR 524
>VE2_HPV36 (P50809) Regulatory protein E2| Length = 509 Score = 28.5 bits (62), Expect = 4.2 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = -1 Query: 290 TVQKSRSTTC-GARRGERESQXXXXXXXXXXXAPQ*CSQTTCAGGAHGRGHAQSGGAWRP 114 T +SRST+ G RR S + ++TT + GA G A+ G Sbjct: 311 TRSRSRSTSRRGGRRRRSRSPSTSSSTTTTNKRSRVRAETTGSRGARGGRGARGGSGGGR 370 Query: 113 VAGRSGRGLRTATAPAPRRS 54 GRS ++T+PA +RS Sbjct: 371 RRGRSS----SSTSPAHKRS 386
>RECF_GLOVI (Q7NHY0) DNA replication and repair protein recF| Length = 375 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 173 SSESIIEEQPSWLDDLLDEPETPVRRAGHR 262 S +++ E+ P W DDLL TPV R HR Sbjct: 171 SPDALAEQLPCW-DDLLVRAATPVMRRRHR 199
>UNC5B_RAT (O08722) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5| homolog 2) Length = 945 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Frame = -1 Query: 176 TTCAGGAHGRGHAQSGGAWRPVAGRSGRG----LRTATAPAPRRSG 51 TT + G S W P + R GRG RT T PAP G Sbjct: 237 TTATVIVYVNGGWSSWAEWSPCSNRCGRGWQKRTRTCTNPAPLNGG 282
>UNC5B_MOUSE (Q8K1S3) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5| homolog 2) Length = 945 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Frame = -1 Query: 176 TTCAGGAHGRGHAQSGGAWRPVAGRSGRG----LRTATAPAPRRSG 51 TT + G S W P + R GRG RT T PAP G Sbjct: 237 TTATVIVYVNGGWSSWAEWSPCSNRCGRGWQKRTRTCTNPAPLNGG 282
>UNC5B_HUMAN (Q8IZJ1) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5| homolog 2) (p53-regulated receptor for death and life protein 1) Length = 945 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Frame = -1 Query: 176 TTCAGGAHGRGHAQSGGAWRPVAGRSGRG----LRTATAPAPRRSG 51 TT + G S W P + R GRG RT T PAP G Sbjct: 237 TTATVIVYVNGGWSSWAEWSPCSNRCGRGWQKRTRTCTNPAPLNGG 282
>CO8A_RABIT (P98136) Complement component C8 alpha chain precursor (Complement| component 8 alpha subunit) Length = 585 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/45 (33%), Positives = 18/45 (40%) Frame = -1 Query: 185 CSQTTCAGGAHGRGHAQSGGAWRPVAGRSGRGLRTATAPAPRRSG 51 C QT GA GH G+W P + R PAP+ G Sbjct: 529 CEQTE-QQGAKADGHWSCWGSWSPCTAGTRERRRECNNPAPQNGG 572
>FZD8_MOUSE (Q61091) Frizzled 8 precursor (Frizzled-8) (Fz-8) (mFz8)| Length = 685 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -1 Query: 179 QTTCAGGAHGRG-HAQSGGAWRPVAGRSGRGLRTATAPAPR 60 + C+GGA G G +GGA AG +GRG A++P R Sbjct: 334 KVACSGGAPGAGGRGGAGGAAAAGAGAAGRG---ASSPGAR 371
>HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)| Length = 443 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 357 ACPPPXISSKPLANAPEAALPSNSAKESL 271 A PPP S+ P NA P+N+AK L Sbjct: 117 AAPPPPSSASPPQNASNNPTPANAAKSPL 145
>YCX9_CHLRE (Q32065) Hypothetical 341.7 kDa protein in psbD-psbC intergenic| region (ORF2971) (ORFB) Length = 2971 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -1 Query: 344 PPSPQNHWQMRPRQRFRRTVQKSRSTTCGARRGERESQ 231 PPSP + P +RF + R T G + G+R+SQ Sbjct: 2692 PPSPPFSSLLIPAKRFENYKRFFRDTLTGDKMGQRKSQ 2729
>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor| Length = 1783 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = -1 Query: 167 AGGAHGRGHAQSGGAWRPVAGRSGRGLRTATAPAPR 60 +GGA G G Q+GGA R AG L A APR Sbjct: 1046 SGGAGGGGMGQAGGAGRGGAGAGAAALPLVVA-APR 1080
>TIF1B_MOUSE (Q62318) Transcription intermediary factor 1-beta (TIF1-beta)| (Tripartite motif protein 28) (KRAB-A-interacting protein) (KRIP-1) Length = 834 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/56 (30%), Positives = 23/56 (41%) Frame = -1 Query: 173 TCAGGAHGRGHAQSGGAWRPVAGRSGRGLRTATAPAPRRSGTGYXXXXXXASGVSR 6 + A G+ G G +GG RP A + A++PA G G GV R Sbjct: 18 SAASGSPGSGEGSAGGEKRPAASSAAAASAAASSPA---GGGGEAQELLEHCGVCR 70
>NOLA1_DROME (Q7KVQ0) H/ACA ribonucleoprotein complex subunit 1-like protein| (GCR 101 snRNP) Length = 237 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 Query: 164 GGAHGRGHAQSGGAWRPVAGRSGRG 90 GG G G + GG +R AGR+G G Sbjct: 190 GGGRGGGGGRGGGGFRGGAGRNGGG 214
>K2C1B_HUMAN (Q7Z794) Keratin, type II cytoskeletal 1b| Length = 576 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/47 (40%), Positives = 20/47 (42%) Frame = -1 Query: 182 SQTTCAGGAHGRGHAQSGGAWRPVAGRSGRGLRTATAPAPRRSGTGY 42 SQ + GGA G G SGG G G G A RSG GY Sbjct: 491 SQVSVNGGAGGGGSYGSGGYGGGSGGGYGGGRSYRGGGARGRSGGGY 537
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 15/51 (29%) Frame = -1 Query: 167 AGGAHGRGHAQSGGAWR---------------PVAGRSGRGLRTATAPAPR 60 AGGA G G ++GG R P G++GRGLR P PR Sbjct: 990 AGGAGGPGAGEAGGGARRRRRRRWDDEAGLLGPERGQAGRGLR---GPGPR 1037
>GRP2_ORYSA (P29834) Glycine-rich cell wall structural protein 2 precursor| Length = 185 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = -1 Query: 167 AGGAHGRGHAQSGGAWRPVAGRSGRGLRTATAPAPRRSGTGYXXXXXXASG 15 AGGAHG G+ GG G G+G + + SG+GY +G Sbjct: 142 AGGAHGGGYGSGGGG----GGGGGQGGGSGSG-----SGSGYGSGSGGGNG 183
>TENR_RAT (Q05546) Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural| recognition molecule J1-160/180) Length = 1356 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/19 (52%), Positives = 10/19 (52%) Frame = -1 Query: 185 CSQTTCAGGAHGRGHAQSG 129 CSQ C GRGH Q G Sbjct: 292 CSQRRCLNACSGRGHCQEG 310
>TENR_MOUSE (Q8BYI9) Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural| recognition molecule J1-160/180) Length = 1358 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/19 (52%), Positives = 10/19 (52%) Frame = -1 Query: 185 CSQTTCAGGAHGRGHAQSG 129 CSQ C GRGH Q G Sbjct: 292 CSQRRCLNACSGRGHCQEG 310
>IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2| Length = 880 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = -1 Query: 182 SQTTCAGGAHG-RGHAQSGGAWRPVAG--RSGRGLRTATAPAPRRSGTGY 42 S+ GG G RG Q GG ++ G + G G + P P + G GY Sbjct: 154 SRPNSGGGYQGNRGPGQGGGGYQGNRGPGQGGGGYQGNRGPGPGQGGGGY 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,639,455 Number of Sequences: 219361 Number of extensions: 447247 Number of successful extensions: 2107 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2092 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
