ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast72c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 42 3e-04
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 37 0.010
3LEVR_BACSU (P23914) Transcriptional regulatory protein levR [Inc... 27 9.9

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +1

Query: 202 DSTVDTGNNNQIGTTLRSDFPPYGRDMPGGARATGR 309
           DS  DTGNNN + T L+ ++ PYG D P G  ATGR
Sbjct: 131 DSIFDTGNNNNLDTKLKCNYRPYGMDFPMGV-ATGR 165



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = +1

Query: 202 DSTVDTGNNNQIGTTLRSDFPPYGRDMPGGARATGR 309
           DS  DTGNNN + T ++S++ PYG D      ATGR
Sbjct: 210 DSVFDTGNNNNLETKIKSNYRPYGMDFKFRV-ATGR 244



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>LEVR_BACSU (P23914) Transcriptional regulatory protein levR [Includes:|
           Putative phosphotransferase EIIA component (EC 2.7.1.-)
           (Putative PTS system EIIA component)]
          Length = 938

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
 Frame = -2

Query: 76  WERRPAASAAER--LSVCTSG 20
           WER+PAAS  ++  +S+CT+G
Sbjct: 701 WERQPAASGKKKALVSICTTG 721


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,515,009
Number of Sequences: 219361
Number of extensions: 327898
Number of successful extensions: 1209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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