ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast72c08 |
|---|---|
| Clone Library Name | barley_pub |
>FDH_HORVU (Q9ZRI8) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 377 Score = 243 bits (620), Expect = 2e-64 Identities = 119/124 (95%), Positives = 120/124 (96%) Frame = +1 Query: 94 MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 273 MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD Sbjct: 1 MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 60 Query: 274 WLESKGHHYIVTDDKEGLNSELEKHIEDMHVLIATPFHPAYVTAERIKKAKNLELLLTAG 453 WLESKGHHYIVTDDKEG NSELEKHIEDMHVLI TPFHPAYVTAE+IKKAK ELLLTAG Sbjct: 61 WLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAG 120 Query: 454 IGSD 465 IGSD Sbjct: 121 IGSD 124
>FDH1_ORYSA (Q9SXP2) Formate dehydrogenase 1, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 1) (FDH 1) Length = 376 Score = 231 bits (590), Expect = 5e-61 Identities = 112/122 (91%), Positives = 117/122 (95%) Frame = +1 Query: 100 AMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWL 279 AMWRAAA L+ RA+GSRAAHTSAGSKKIVGVFY+ GEYADKNPNFVGCVEGALGIR+WL Sbjct: 2 AMWRAAAGHLLGRALGSRAAHTSAGSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREWL 61 Query: 280 ESKGHHYIVTDDKEGLNSELEKHIEDMHVLIATPFHPAYVTAERIKKAKNLELLLTAGIG 459 ESKGHHYIVTDDKEGLNSELEKHIEDMHVLI TPFHPAYV+AERIKKAKNLELLLTAGIG Sbjct: 62 ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIG 121 Query: 460 SD 465 SD Sbjct: 122 SD 123
>FDH2_ORYSA (Q67U69) Formate dehydrogenase 2, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 2) (FDH 2) Length = 378 Score = 208 bits (530), Expect = 5e-54 Identities = 102/124 (82%), Positives = 110/124 (88%), Gaps = 2/124 (1%) Frame = +1 Query: 100 AMWRA--AARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 273 AMWRA AA QL+ RA+ S AA TSAGSKK+VGVFY+ GEYADKNPNFVGCV+ ALGIR Sbjct: 2 AMWRAPSAAGQLLGRALASTAAQTSAGSKKVVGVFYKGGEYADKNPNFVGCVDSALGIRG 61 Query: 274 WLESKGHHYIVTDDKEGLNSELEKHIEDMHVLIATPFHPAYVTAERIKKAKNLELLLTAG 453 WLESKGH YIVTDDKEG+N ELEKHIED HVLI TPFHPAY+TAERIKKAKNLELLLTAG Sbjct: 62 WLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAG 121 Query: 454 IGSD 465 +GSD Sbjct: 122 VGSD 125
>FDH_ARATH (Q9S7E4) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 384 Score = 175 bits (444), Expect = 5e-44 Identities = 84/101 (83%), Positives = 92/101 (91%) Frame = +1 Query: 163 TSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELE 342 +S SKKIVGVFY+A EYA KNPNF+GCVE ALGIRDWLES+GH YIVTDDKEG + ELE Sbjct: 31 SSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELE 90 Query: 343 KHIEDMHVLIATPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 KHI D+HVLI+TPFHPAYVTAERIKKAKNL+LLLTAGIGSD Sbjct: 91 KHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSD 131
>FDH_SOLTU (Q07511) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 381 Score = 174 bits (440), Expect = 1e-43 Identities = 87/128 (67%), Positives = 102/128 (79%), Gaps = 2/128 (1%) Frame = +1 Query: 88 VSMAAMWRAAARQLVDRA--VGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGAL 261 ++M+ + AAR + + V +R S G KKIVGVFY+A EYA+ NPNF+GC E AL Sbjct: 1 MAMSRVASTAARAITSPSSLVFTRELQASPGPKKIVGVFYKANEYAEMNPNFLGCAENAL 60 Query: 262 GIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLIATPFHPAYVTAERIKKAKNLELL 441 GIR+WLESKGH YIVT DKEG + ELEKHI D+HVLI+TPFHPAYVTAERIKKAKNL+LL Sbjct: 61 GIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLL 120 Query: 442 LTAGIGSD 465 LTAGIGSD Sbjct: 121 LTAGIGSD 128
>FDH_PICAN (P33677) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 361 Score = 124 bits (310), Expect = 2e-28 Identities = 58/95 (61%), Positives = 70/95 (73%) Frame = +1 Query: 181 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDM 360 K+V V Y AG++A GC E ALGIRDWLE +GH +VT DKEG NS LEK+I D Sbjct: 1 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDA 60 Query: 361 HVLIATPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 V+I+TPFHPAY+T ERI KAK L+LL+ AG+GSD Sbjct: 61 DVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSD 95
>FDH_NEUCR (Q07103) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 375 Score = 107 bits (268), Expect = 1e-23 Identities = 45/95 (47%), Positives = 67/95 (70%) Frame = +1 Query: 181 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDM 360 K++ V Y G++ ++ P +G ++ LG+R WLE +GH + T DK+G NS +K +ED Sbjct: 3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDA 62 Query: 361 HVLIATPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 ++I TPFHP Y+TAER+ +AK L+L +TAGIGSD Sbjct: 63 EIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSD 97
>FDH_EMENI (Q03134) Probable formate dehydrogenase (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase) (FDH) Length = 377 Score = 107 bits (266), Expect = 2e-23 Identities = 48/91 (52%), Positives = 61/91 (67%) Frame = +1 Query: 193 VFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLI 372 V Y G +A P +G E LGIR W+E +GH + T DK+G NS +K + D V+I Sbjct: 2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVII 61 Query: 373 ATPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 TPFHP Y+TAER+ KAKNL+L +TAGIGSD Sbjct: 62 TTPFHPGYLTAERLAKAKNLKLAVTAGIGSD 92
>FDH_PSESR (P33160) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 400 Score = 90.1 bits (222), Expect = 2e-18 Identities = 44/76 (57%), Positives = 56/76 (73%) Frame = +1 Query: 238 VGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLIATPFHPAYVTAERIK 417 +G V G LG+R +LES GH +VT DK+G +S E+ + D V+I+ PF PAY+T ERI Sbjct: 50 LGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIA 109 Query: 418 KAKNLELLLTAGIGSD 465 KAKNL+L LTAGIGSD Sbjct: 110 KAKNLKLALTAGIGSD 125
>FDH2_YEAST (Q08987) Formate dehydrogenase 2 (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase 2) Length = 376 Score = 87.8 bits (216), Expect = 1e-17 Identities = 38/96 (39%), Positives = 67/96 (69%), Gaps = 1/96 (1%) Frame = +1 Query: 181 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGL-NSELEKHIED 357 K++ V Y+ G++A++ +GC+E LGIR+++E +G+ + T DK+ S +++ ++D Sbjct: 5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKD 64 Query: 358 MHVLIATPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 ++I TPF PAY++ RI +A NL+L +TAG+GSD Sbjct: 65 AEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSD 100
>FDH1_YEAST (Q08911) Formate dehydrogenase 1 (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase 1) Length = 376 Score = 87.8 bits (216), Expect = 1e-17 Identities = 38/96 (39%), Positives = 67/96 (69%), Gaps = 1/96 (1%) Frame = +1 Query: 181 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGL-NSELEKHIED 357 K++ V Y+ G++A++ +GC+E LGIR+++E +G+ + T DK+ S +++ ++D Sbjct: 5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKD 64 Query: 358 MHVLIATPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 ++I TPF PAY++ RI +A NL+L +TAG+GSD Sbjct: 65 AEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSD 100
>ARCB_HAEIN (P44578) Aerobic respiration control sensor protein arcB homolog| (EC 2.7.13.3) Length = 325 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +1 Query: 292 HHYIVTDDKEGLNSELEKHIEDMHVLIATPFHPAYVTAERIKKAKNLELLLTAGIGS 462 +H+IV D G++ E +KHI +M+ + + + + +KNL L+ G S Sbjct: 269 YHFIVKDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMGRGFNS 325
>TCPE_ARATH (O04450) T-complex protein 1 subunit epsilon (TCP-1-epsilon)| (CCT-epsilon) Length = 535 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +1 Query: 247 VEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLIAT-PFHP 390 VEG +G + LE Y + DK+ + ++ K IED H+ I T PF P Sbjct: 207 VEGKVGGK--LEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEP 253
>Y169_METJA (Q57633) Hypothetical ATP-binding protein MJ0169| Length = 263 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = +1 Query: 298 YIVTDDKEGLNSELEKH--IEDMHVLIATPFHPAYVTAERIKKAKNL 432 Y++ D GLN E+ H I D +L+ TP + + A R+K++ + Sbjct: 114 YVIIDAPAGLNREMATHLAIADKLLLVVTPEMFSIIDAVRLKESAEM 160
>NHR6_CAEEL (P41829) Nuclear hormone receptor family member nhr-6 (Cnr8)| Length = 619 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = -2 Query: 254 PSTQPTKLGFLSAY-SPAW*NTPTIFLLPADVCAALDPTARSTSCLAAALHIAAMETEGS 78 P++ P GFL ++ +P +TPT F +P++ D + A LH A EG Sbjct: 229 PTSPPQLQGFLRSFLNPDNLSTPTSFGVPSETALDADKMCAVCNDRAVCLHYGARTCEGC 288 Query: 77 R 75 + Sbjct: 289 K 289
>MOAB_STAAW (Q8NV99) Molybdenum cofactor biosynthesis protein B| Length = 168 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 244 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLIAT 378 CV L D S H+ IV D+K + ++++K + ED+ V+I T Sbjct: 34 CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79
>MOAB_STAAS (Q6G747) Molybdenum cofactor biosynthesis protein B| Length = 168 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 244 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLIAT 378 CV L D S H+ IV D+K + ++++K + ED+ V+I T Sbjct: 34 CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79
>MOAB_STAAN (P99137) Molybdenum cofactor biosynthesis protein B| Length = 168 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 244 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLIAT 378 CV L D S H+ IV D+K + ++++K + ED+ V+I T Sbjct: 34 CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79
>MOAB_STAAM (P65406) Molybdenum cofactor biosynthesis protein B| Length = 168 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 244 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLIAT 378 CV L D S H+ IV D+K + ++++K + ED+ V+I T Sbjct: 34 CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79
>MOAB_STAAC (Q5HDT2) Molybdenum cofactor biosynthesis protein B| Length = 168 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 244 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLIAT 378 CV L D S H+ IV D+K + ++++K + ED+ V+I T Sbjct: 34 CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,896,780 Number of Sequences: 219361 Number of extensions: 1088880 Number of successful extensions: 3649 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3552 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3644 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
