ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast72c07 |
|---|---|
| Clone Library Name | barley_pub |
>GUNK_FUSOX (P45699) Putative endoglucanase type K precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) Length = 376 Score = 32.3 bits (72), Expect = 0.52 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +2 Query: 212 RGSRRRGTCPPRLEATQMSSIASTWPSCSPSTRSWGLSCRCCPYAAGC 355 RG++ RG+CP + +AT +S+ + C S ++ C + C Sbjct: 316 RGTKTRGSCPAKTDATAKASVVPAYYQCGGSKSAYPNGNLACATGSKC 363
>HOW_DROME (O01367) Protein held out wings (KH-domain protein KH93F) (Putative| RNA-binding protein) (Protein muscle-specific) (Protein wings held out) (Protein struthio) (Quaking-related 93F) Length = 405 Score = 32.0 bits (71), Expect = 0.68 Identities = 19/53 (35%), Positives = 28/53 (52%) Frame = +1 Query: 229 RNLSPQIRSNPDVVDSQYLAELLAEHEKLGPFMQVLPICSRLLVHEIMRVSNS 387 ++L+PQ + + YLA+LL + ++L F V RLL EI RV S Sbjct: 61 QHLTPQQQQQSTQSIADYLAQLLKDRKQLAAFPNVFTHVERLLDEEIARVRAS 113
>NOV_RAT (Q9QZQ5) Protein NOV homolog precursor (NovH) (Nephroblastoma| overexpressed gene protein homolog) Length = 351 Score = 30.4 bits (67), Expect = 2.0 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Frame = +2 Query: 236 CPPRLEATQMSSIASTWPSCSPSTRSWGLSCRCCPYAA-----GCWSMKLC 373 CP R + Q SI+ P+C+P RS C CCP A C M+ C Sbjct: 29 CPSRCPS-QCPSIS---PTCAPGVRSVLDGCSCCPVCARQRGESCSEMRPC 75
>NOV_MOUSE (Q64299) Protein NOV homolog precursor (NovH) (Nephroblastoma| overexpressed gene protein homolog) Length = 354 Score = 30.0 bits (66), Expect = 2.6 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Frame = +2 Query: 236 CPPRLEATQMSSIASTWPSCSPSTRSWGLSCRCCPYAA-----GCWSMKLC 373 CPP+ + P+C+P RS C CCP A C M+ C Sbjct: 33 CPPKCPSIS--------PTCAPGVRSVLDGCSCCPVCARQRGESCSEMRPC 75
>FTHFD_RAT (P28037) 10-formyltetrahydrofolate dehydrogenase (EC 1.5.1.6)| (10-FTHFDH) (Aldehyde dehydrogenase 1 family member L1) (FBP-CI) Length = 902 Score = 29.6 bits (65), Expect = 3.4 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +1 Query: 277 QYLAELLAEHEKLGPFMQVLPICSRLLVHEIM 372 Q L E++A+++ LG + VLP CS+ + E++ Sbjct: 64 QALPEVVAKYQALGAELNVLPFCSQFIPMEVI 95
>FTHFD_MOUSE (Q8R0Y6) 10-formyltetrahydrofolate dehydrogenase (EC 1.5.1.6)| (10-FTHFDH) (Aldehyde dehydrogenase 1 family member L1) Length = 902 Score = 29.6 bits (65), Expect = 3.4 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +1 Query: 277 QYLAELLAEHEKLGPFMQVLPICSRLLVHEIM 372 Q L E++A+++ LG + VLP CS+ + E++ Sbjct: 64 QALPEVVAKYQALGAELNVLPFCSQFIPMEVI 95
>RPOC_LACJO (Q74L94) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1224 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/60 (23%), Positives = 29/60 (48%) Frame = +1 Query: 220 SPSRNLSPQIRSNPDVVDSQYLAELLAEHEKLGPFMQVLPICSRLLVHEIMRVSNSSHNP 399 S ++ + R DVV QY L+ + E+ + + C ++ +EI ++ ++ NP Sbjct: 667 SDKDDIVAEARKKVDVVSKQYRRGLITDEERHDRVISIWNNCKDIVQNEIAQIIHAPRNP 726
>Y2873_GEOSL (P61404) UPF0313 protein GSU2873| Length = 605 Score = 29.3 bits (64), Expect = 4.4 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Frame = +1 Query: 211 QGFSPSRNLSPQIRSNPDVVDSQ--YLAELLAEHEKLGPFMQVLPICSRLLVHEIMRVSN 384 +G RN++ D+++ Q Y EL+A H +G ++V P H + RV++ Sbjct: 400 RGVRGVRNVAVSSGIRYDLMERQPAYFRELVAHH--VGGLLKVAP------EHMVARVTD 451 Query: 385 SSHNPGFSDFDR--HRFR 432 PG FDR RFR Sbjct: 452 LMRKPGKESFDRFLERFR 469
>PHK_NITEU (Q82T07) Probable phosphoketolase (EC 4.1.2.-)| Length = 790 Score = 29.3 bits (64), Expect = 4.4 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +1 Query: 217 FSPSRNLSPQIRSNPDVVDSQYLAELLAEHEKLGPFMQVLPICS 348 F P S ++ S DV +LAE L E E L P +V+ I S Sbjct: 420 FGPDETASNRLGSLYDVTPKTWLAETLPEDEHLAPDGRVMEILS 463
>FBN1_MOUSE (Q61554) Fibrillin-1 precursor| Length = 2871 Score = 29.3 bits (64), Expect = 4.4 Identities = 11/27 (40%), Positives = 12/27 (44%) Frame = +2 Query: 293 CSPSTRSWGLSCRCCPYAAGCWSMKLC 373 C R WGL C CP+ KLC Sbjct: 2364 CCVGGRGWGLHCEICPFEGTVAYKKLC 2390
>FTHFD_PONPY (Q5RFM9) 10-formyltetrahydrofolate dehydrogenase (EC 1.5.1.6)| (10-FTHFDH) (Aldehyde dehydrogenase 1 family member L1) Length = 902 Score = 28.9 bits (63), Expect = 5.8 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +1 Query: 277 QYLAELLAEHEKLGPFMQVLPICSRLLVHEIM 372 Q L +++A+++ LG + VLP CS+ + EI+ Sbjct: 64 QALPDVVAKYQALGAELNVLPFCSQFIPMEII 95
>FTHFD_HUMAN (O75891) 10-formyltetrahydrofolate dehydrogenase (EC 1.5.1.6)| (10-FTHFDH) (Aldehyde dehydrogenase 1 family member L1) Length = 902 Score = 28.9 bits (63), Expect = 5.8 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +1 Query: 277 QYLAELLAEHEKLGPFMQVLPICSRLLVHEIM 372 Q L +++A+++ LG + VLP CS+ + EI+ Sbjct: 64 QALPDVVAKYQALGAELNVLPFCSQFIPMEII 95
>AMPN_HUMAN (P15144) Aminopeptidase N (EC 3.4.11.2) (hAPN) (Alanyl| aminopeptidase) (Microsomal aminopeptidase) (Aminopeptidase M) (gp150) (Myeloid plasma membrane glycoprotein CD13) (CD13 antigen) Length = 966 Score = 28.9 bits (63), Expect = 5.8 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Frame = -1 Query: 434 LLNRCLSKSLNPGLWEEFD--TRIISWTNNLLHMG 336 +LNR LS +LNP L + D + IIS TNN++ G Sbjct: 839 ILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQG 873
>Y1566_METJA (Q58961) Hypothetical protein MJ1566| Length = 447 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +1 Query: 268 VDSQYLAELLAEHEKLGPFMQVLPICSRLLVHEIMRVSNSSHNPGFSDFD 417 VD + + E+ E ++ + V+ I L EI+ NSS+ P F DFD Sbjct: 260 VDLEDITEIRGELSRIDRELAVIEIVCGYL-KEIVEFLNSSYPPNFGDFD 308
>ZAN_HUMAN (Q9Y493) Zonadhesin precursor| Length = 2812 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/38 (44%), Positives = 18/38 (47%) Frame = +2 Query: 221 RRRGTCPPRLEATQMSSIASTWPSCSPSTRSWGLSCRC 334 R CP LE SS + PSCSPS W L RC Sbjct: 2202 RNSSFCP--LECPAYSSYTNCLPSCSPS--CWDLDGRC 2235
>GLMU_PROMP (Q7V274) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 449 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Frame = +1 Query: 247 IRSNPDVVDSQYLAELLAEHEKLGPFMQVLPIC---SRLLVHEIMRVSNS 387 I N ++++S + +H K+GP+ + P C S+ + + + NS Sbjct: 299 INENCEIINSTIFDSKIMDHVKIGPYSHIRPNCEISSKSKIGNFVEIKNS 348
>PHLN_BURPS (Q9RGS8) Non-hemolytic phospholipase C precursor (EC 3.1.4.3)| (PLC-N) (Phosphatidylcholine cholinephosphohydrolase) (Phosphatidylcholine-hydrolyzing phospholipase C) (PC-PLC) Length = 700 Score = 28.1 bits (61), Expect = 9.9 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -1 Query: 209 WPYSPDMAAAAPPERRKH 156 WP PD + APP+R +H Sbjct: 466 WPQLPDTSGYAPPDRNRH 483
>YAV5_XANCV (P19520) Hypothetical 50 kDa avirulence protein in avrBs1 region| Length = 445 Score = 28.1 bits (61), Expect = 9.9 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%) Frame = +1 Query: 229 RNLSPQIRSNPDVVDSQYL--AELLAEHEKL 315 RNL+P IR +PD + + ++ E LAEH+ L Sbjct: 254 RNLTPFIRHDPDRISTDFVHSIEELAEHQML 284 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,663,191 Number of Sequences: 219361 Number of extensions: 670745 Number of successful extensions: 2137 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2068 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2137 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
