ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast72c05 |
|---|---|
| Clone Library Name | barley_pub |
>SC5D_TOBAC (Q9ZT29) Delta-7-sterol-C5(6)-desaturase (EC 1.3.3.-) (Delta-7-C-5| sterol desaturase) (Delta7-sterol-C5-desaturase) Length = 271 Score = 148 bits (373), Expect = 6e-36 Identities = 69/113 (61%), Positives = 83/113 (73%) Frame = +1 Query: 97 EDYWGLFREETDWYNEIFLSAVVPGGGGWWRALPHPLRSWLRNCIGGYLLYFATGFLWCF 276 EDY F EET +YN + L +P WW LPH L+ WLRN IGG LLYF +GFLWCF Sbjct: 2 EDYLKQFVEETSFYNRLVLGTFMPES--WWGPLPHMLQGWLRNYIGGVLLYFISGFLWCF 59 Query: 277 VIYYWKRNAYIPKDAVPTVEAMKKXIIVASKAMPFYCALPSVSEHMIESGWTR 435 IY+ KRN YIPKDA+P+ +AM I VA KAMP+YCALPS+SE+MIE+GWT+ Sbjct: 60 YIYHLKRNVYIPKDAIPSNKAMLLQISVAMKAMPWYCALPSLSEYMIENGWTK 112
>SC5D1_ARATH (Q39208) Delta-7-sterol-C5(6)-desaturase 1 (EC 1.3.3.-)| (Delta-7-C-5 sterol desaturase 1) (Delta7-sterol-C5-desaturase 1) (STEROL1 protein) (Dwarf 7 protein) Length = 281 Score = 132 bits (333), Expect = 3e-31 Identities = 61/107 (57%), Positives = 78/107 (72%) Frame = +1 Query: 115 FREETDWYNEIFLSAVVPGGGGWWRALPHPLRSWLRNCIGGYLLYFATGFLWCFVIYYWK 294 F +ET +YN I LS ++P W LPH L++WLRN + G LLYF +GFLWCF IYY K Sbjct: 11 FVDETSFYNRIVLSHLLPAN--LWEPLPHFLQTWLRNYLAGTLLYFISGFLWCFYIYYLK 68 Query: 295 RNAYIPKDAVPTVEAMKKXIIVASKAMPFYCALPSVSEHMIESGWTR 435 N Y+PKDA+PT++AM+ + VA KAMP+Y LP+VSE MIE GWT+ Sbjct: 69 INVYLPKDAIPTIKAMRLQMFVAMKAMPWYTLLPTVSESMIERGWTK 115
>SC5D2_ARATH (Q9M883) Putative delta-7-sterol-C5(6)-desaturase 2 (EC 1.3.3.-)| (Delta-7-C-5 sterol desaturase 2) (Delta7-sterol-C5-desaturase 2) (Homolog of DWF7 protein) Length = 279 Score = 125 bits (313), Expect = 6e-29 Identities = 59/112 (52%), Positives = 77/112 (68%) Frame = +1 Query: 100 DYWGLFREETDWYNEIFLSAVVPGGGGWWRALPHPLRSWLRNCIGGYLLYFATGFLWCFV 279 DY ET +YN + LS ++P W LPH L++WLRN + G +LYF +GFLWCF Sbjct: 7 DYNDQIVNETSFYNRMVLSHLLPVN--LWEPLPHFLQTWLRNYLAGNILYFISGFLWCFY 64 Query: 280 IYYWKRNAYIPKDAVPTVEAMKKXIIVASKAMPFYCALPSVSEHMIESGWTR 435 IYY K N Y+PK+++PT +AM I VA KAMP+Y LP+VSE+MIE GWT+ Sbjct: 65 IYYLKLNVYVPKESIPTRKAMLLQIYVAMKAMPWYTLLPAVSEYMIEHGWTK 116
>SGLT_VIBPA (P96169) Sodium/glucose cotransporter (Na(+)/glucose symporter)| Length = 543 Score = 33.1 bits (74), Expect = 0.30 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Frame = +1 Query: 259 GFLWCFVIYYWKRNAYIPKD--AVPTVEAMKKXIIVAS---KAMPFYCALPSVSEHMIES 423 G LW +YYW N YI + A +V +K I+ A+ +PF LP ++ ++I S Sbjct: 254 GGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITS 313
>BSU1_SCHPO (P33532) Vitamin B6 transporter bsu1 (Vitamin B6 uptake protein 1)| (Changed amiloride resistance protein 1) (Amiloride transporter car1) Length = 526 Score = 30.8 bits (68), Expect = 1.5 Identities = 14/60 (23%), Positives = 28/60 (46%) Frame = +1 Query: 109 GLFREETDWYNEIFLSAVVPGGGGWWRALPHPLRSWLRNCIGGYLLYFATGFLWCFVIYY 288 G+ R E + + +F++ + P G + HP W+ +G ++ A G W ++ Y Sbjct: 379 GVARPEARFTSALFITLLFPAGMFLFAFTCHPPFPWMSPIVGNSMVTVANGHNWMCILNY 438
>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)| Length = 640 Score = 29.6 bits (65), Expect = 3.3 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -2 Query: 218 SQERSGCGSARHQPPPPGTTA 156 S E + GSA PPPPGTTA Sbjct: 512 SNEGAPSGSALQMPPPPGTTA 532
>NUOH_MYCTU (P65561) NADH-quinone oxidoreductase chain H (EC 1.6.99.5) (NADH| dehydrogenase I, chain H) (NDH-1, chain H) Length = 410 Score = 29.6 bits (65), Expect = 3.3 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +1 Query: 178 GWWRALPHPLRSWLRNCIGGYLLYFATGFLWCFV-IYYWKRNAYIPK 315 G W A P PL W G + L + T +W F+ IY+W R A +P+ Sbjct: 265 GGWHA-PWPLNMWASANTGWWPLIWFTAKVWGFLFIYFWLR-ATLPR 309
>NUOH_MYCBO (P65562) NADH-quinone oxidoreductase chain H (EC 1.6.99.5) (NADH| dehydrogenase I, chain H) (NDH-1, chain H) Length = 410 Score = 29.6 bits (65), Expect = 3.3 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +1 Query: 178 GWWRALPHPLRSWLRNCIGGYLLYFATGFLWCFV-IYYWKRNAYIPK 315 G W A P PL W G + L + T +W F+ IY+W R A +P+ Sbjct: 265 GGWHA-PWPLNMWASANTGWWPLIWFTAKVWGFLFIYFWLR-ATLPR 309
>PRP28_CRYNE (Q5KNF8) Pre-mRNA splicing ATP-dependent RNA helicase PRP28 (EC| 3.6.1.-) Length = 738 Score = 29.3 bits (64), Expect = 4.3 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +1 Query: 106 WGLFREETDWYNEIFLSAVVPGGGGWWRALPHPLRSWLRNCIGGYLL 246 W +FRE+ S GGG +PHPLR+W + I +L Sbjct: 294 WRIFRED--------FSIAARGGG-----IPHPLRNWRESAIPSQIL 327
>ATG13_EMENI (Q5BBK4) Autophagy-related protein 13| Length = 974 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -2 Query: 209 RSGCGSARHQPPPPGTTALRKISLYQSVSSRNRPQ*SSP 93 R+ +RH PPP TT+ RK + ++ + P +SP Sbjct: 470 RTSLSDSRHMPPPSVTTSSRKPPSFGPDNANSSPNSASP 508
>NEUR2_HUMAN (Q9Y3R4) Sialidase-2 (EC 3.2.1.18) (Cytosolic sialidase)| (N-acetyl-alpha-neuraminidase 2) Length = 380 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/26 (42%), Positives = 12/26 (46%) Frame = +1 Query: 166 PGGGGWWRALPHPLRSWLRNCIGGYL 243 PG W HP SW R +G YL Sbjct: 286 PGSPAQWLLYTHPTHSWQRADLGAYL 311
>RPGF3_RAT (Q9Z1C8) Rap guanine nucleotide exchange factor 3 (cAMP-regulated| guanine nucleotide exchange factor I) (cAMP-GEFI) (Exchange factor directly activated by cAMP 1) (Epac 1) Length = 884 Score = 28.1 bits (61), Expect = 9.7 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +3 Query: 297 QRLHPQRCCPYSRSYEEAXNCCIKG 371 +R+H RCC Y +E CI+G Sbjct: 4 KRMHRPRCCSYQLVFEHRRPSCIQG 28
>RPGF3_MOUSE (Q8VCC8) Rap guanine nucleotide exchange factor 3 (cAMP-regulated| guanine nucleotide exchange factor I) (cAMP-GEFI) (Exchange factor directly activated by cAMP 1) (Epac 1) Length = 876 Score = 28.1 bits (61), Expect = 9.7 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +3 Query: 297 QRLHPQRCCPYSRSYEEAXNCCIKG 371 +R+H RCC Y +E CI+G Sbjct: 4 KRMHRPRCCSYQLVFEHRRPSCIQG 28
>PIGF_HUMAN (Q07326) Phosphatidylinositol-glycan biosynthesis, class F protein| (PIG-F) (GPI11 homolog) Length = 219 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Frame = +1 Query: 133 WYNEIFLSAVVPGGGGWWRALPHPL------RSWLRNCIGGYLLYFATGFLWCFVIYYWK 294 W N + ++ + G W ALP PL + W +C G + G + + YW Sbjct: 151 WENSLQITTISSFVGAWLGALPIPLDWERPWQVWPISCTLGATFGYVAGLVISPLWIYWN 210 Query: 295 R 297 R Sbjct: 211 R 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,633,719 Number of Sequences: 219361 Number of extensions: 643827 Number of successful extensions: 2250 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2191 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2246 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
