>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 183 VVLESSPDRRTSGFAFFTWTNAFRALDALGV--GDKMRGRHLQL 308
           VV++    +R+ GF F T+TN   A DA+    G+ + GR +++
Sbjct: 36  VVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRV 79

>NALP6_HUMAN (P59044) NACHT-, LRR- and PYD-containing protein 6|
           (PYRIN-containing APAF1-like protein 5)
          Length = 892

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -3

Query: 359 HLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEGEAGRATVRRRLQHHA 180
           H+ +   R +  + +  ++    + L+  PE     E +GP EE E GRA   RR   H 
Sbjct: 125 HVLQLHARVKERNARSVKITKRFTKLLIAPESAAPEEALGPAEEPEPGRA---RRSDTHT 181

Query: 179 PNAL 168
            N L
Sbjct: 182 FNRL 185

>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1138

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 392 MGSQFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEG 225
           MGS ++    + +   F +   H P   Q+Q      +PY +  +R  G GP  +G
Sbjct: 630 MGSGYTFPAGVSVPGTFLQSTAHSPAGNQVQAGKQSHIPYSQ--QRPSGPGPMNQG 683

>LIN36_CAEEL (P34427) Protein lin-36 (Abnormal cell lineage protein 36)|
          Length = 962

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 397 TSWGPSFPFTRRSISRAISPVDEDMTRNPSSCRCRPLILSPTPRASSARKALVH 236
           TS  P   F++R +       ++   + PS    RPLILSP  + S+ R  L H
Sbjct: 726 TSSSPGGIFSQRVMGAVAQ--EKGPAKRPSVLSRRPLILSPRKKTSTPRPTLSH 777

>CRSP2_HUMAN (O60244) CRSP complex subunit 2 (Cofactor required for Sp1|
            transcriptional activation subunit 2) (Transcriptional
            coactivator CRSP150) (Vitamin D3 receptor-interacting
            protein complex 150 kDa component) (DRIP150) (Thyroid
            hormone receptor-ass
          Length = 1454

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 97   TQPRTLLLP---ALDWPASPSLWDSTGRAFGAWCWSRRRTVARPASPSSHGPTPSARLTP 267
            + P T++ P   A +WP SP +   +  A        R     PA+PS H P P A  +P
Sbjct: 1094 SSPYTMVSPSGRAGNWPGSPQVSGPSPAA--------RMPGMSPANPSLHSPVPDASHSP 1145

>FOXK1_MOUSE (P42128) Forkhead box protein K1 (Myocyte nuclear factor) (MNF)|
          Length = 617

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 449 RQLILQRLEQHVTLHAPDL----MGSQFSVHPEIHLSRYFTRGRRHDPQP 312
           RQL L  +  H+T H P       G Q S+   + L+RYF +  R   +P
Sbjct: 308 RQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEP 357

>PP1RA_XENLA (Q6GLQ4) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10
          Length = 819

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 383 QFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGP 237
           +  +  EI LS+       H+P P+  + S   L+P  E     +GV P
Sbjct: 482 EMGILQEIFLSKESVPDTPHEPDPESYEPSPPKLIPLDEDCSMDDGVYP 530

>KARG_ANTJA (O15992) Arginine kinase (EC 2.7.3.3) (AK)|
          Length = 715

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 297 HLQLLGLR-VMSSSTGEIAREMDLRVNGKLGPHEVRCVQ 410
           H+Q  G+    S STGE A   D+    +LG  EV+CVQ
Sbjct: 308 HIQARGIHGEHSESTGEDAGVYDISNRRRLGLSEVQCVQ 346

>PRDM8_MOUSE (Q8BZ97) PR domain zinc finger protein 8 (PR domain-containing|
           protein 8)
          Length = 687

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 22/71 (30%), Positives = 27/71 (38%)
 Frame = -3

Query: 335 GRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEGEAGRATVRRRLQHHAPNALPVES 156
           G +   Q QQ Q   + L+P P+  K     GP                HH P + P  S
Sbjct: 206 GGKEQQQQQQQQQQEAPLIPGPKFCK----AGPI---------------HHYPASSPEAS 246

Query: 155 QSDGEAGQSSA 123
              G AG SSA
Sbjct: 247 NPPGSAGASSA 257

>LHX3_BRARE (Q90421) LIM/homeobox protein Lhx3 (Homeobox protein LIM-3)|
          Length = 398

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -1

Query: 385 PSFPFTRRSISRAISPVDEDMTRNPSSCRCRPLILSPTPRASSARKALVHVKKAKPDVRR 206
           P+FP    +I  +  P  +    +P S    P  L P PR      +LV+ +   P   +
Sbjct: 289 PAFPLEHGAIIPSQEPYHDIQASSPYSLPQSPGPLQPLPRHQPLISSLVYPESGLPMAGQ 348

Query: 205 SGDDSST 185
           SG    T
Sbjct: 349 SGGQDMT 355

>GPA1_TRIVA (Q86D96) Guanine nucleotide-binding protein alpha-1 subunit (G|
           alpha-1) (GTP-binding protein alpha subunit 1)
          Length = 402

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 320 PQPQQLQMSASHLVPYPEGVKRAEGVGPCEEGEAGRATVRRRLQ 189
           P+PQ+    A  +V   +    A G+  C  GE+G+ T  R+L+
Sbjct: 61  PEPQKPAEPAPKVVAVEDDTNEAYGLLLCGAGESGKTTFTRQLK 104

>SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1137

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 392 MGSQFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEG 225
           MGS ++    + +   F +   H P   Q+Q      +PY +  +R  G GP  +G
Sbjct: 679 MGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQ--QRPSGPGPMNQG 732

>MYBF_ARATH (Q700D9) Putative Myb family transcription factor At1g14600|
          Length = 255

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = -3

Query: 410 LHAPDLMGSQFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCE 231
           +HA DL+G Q+   P++ L     +G         LQM             R   +G  E
Sbjct: 37  VHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG---------SRITLLGKPE 87

Query: 230 EGEAGRATVRRRL---QHHAPNALPVESQSD 147
           E  +  +  RRR    + H  + LPV +++D
Sbjct: 88  ESSSPSSRRRRRQDNEEDHLHDNLPVHARND 118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,211,986
Number of Sequences: 219361
Number of extensions: 1354245
Number of successful extensions: 5388
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5387
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)