>YNN4_YEAST (P53912) Hypothetical 41.2 kDa protein in FPR1-TOM22 intergenic|
           region
          Length = 376

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -1

Query: 326 IHHLPVSEYKRGLDGLVDAVLAELL--RDVGDLLVAFLR 216
           IHH+PV  YK GLD  +  +L ++   R+ G+ LVA L+
Sbjct: 339 IHHIPVKVYKNGLDD-IPQLLDDIKHGRNSGEKLVAVLK 376

>BETI_CHRSL (Q9L4K2) HTH-type transcriptional regulator betI|
          Length = 207

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 338 RHRAIHHLPVSEYKRGLDGLVDAVLAELLRDVGDLLVA 225
           RH  +    +S Y  G DGL++A + ++L D+ D + A
Sbjct: 37  RHAGVSAGIISHYFGGKDGLLEATMRQILTDLSDAVAA 74

>APHE_STRGR (P18150) Streptomycin 3''-kinase (EC 2.7.1.87) (Streptomycin|
           3''-phosphotransferase) (Streptomycin
           6-phosphotransferase) (Streptomycin 6-kinase)
          Length = 272

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
 Frame = -1

Query: 377 PAER---GPVNTSWGR---RHRAIHHLPVSE--YKRGLDGLVDAVLAELLRDVGDLLVAF 222
           PA+R     + T+WG      R +H +PV+   ++RGLD +VDA    + R  G +   F
Sbjct: 95  PADRVGADDLRTAWGAVADAVRRLHEVPVASCPFRRGLDSVVDAARDVVAR--GAVHPEF 152

Query: 221 LRQQHAPVSPPHL 183
           L  +   V P  L
Sbjct: 153 LPVEQRLVPPAEL 165

>EOMES_MOUSE (O54839) Eomesodermin homolog|
          Length = 688

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 204 GVLLPEEGHQEVADVAQQLGKYCIDEPVKSPLIFGDWEVVYCSVATSPGGIYRTPL 371
           G+L P++  +EVA+  Q+     + +PV + L  G +E  Y S    P GI   PL
Sbjct: 503 GLLSPQQ-SEEVANPPQRWLVTPVQQPVTNKLDIGSYESEYTSSTLLPYGIKSLPL 557

>PAP2_BRACM (Q94KU6) Plastid lipid-associated protein 2, chloroplast precursor|
          Length = 319

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +3

Query: 171 SILSKVRGTDRGVLLPEEGHQEVADVAQQLGKYCIDEPVKSP-----LIFGDWEVVYCS 332
           S++  + GTDRG+    E   E+ D+  QL       P  +P     L+ G W + Y S
Sbjct: 98  SLVDSLYGTDRGLSASSETRAEIGDLITQLES---KNPTPAPTDALFLLNGKWILAYTS 153

>PAP2_ARATH (O49629) Probable plastid-lipid associated protein 2, chloroplast|
           precursor (AtPap2) (Fibrillin 2)
          Length = 310

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +3

Query: 171 SILSKVRGTDRGVLLPEEGHQEVADVAQQLGKYCIDEPVKSP-----LIFGDWEVVYCS 332
           S++  + GTDRG+    E   E+ D+  QL       P  +P     L+ G W + Y S
Sbjct: 89  SLVDSLYGTDRGLSASSETRAEIGDLITQLES---KNPTPAPTEALFLLNGKWILAYTS 144

>RN2H_SYNY3 (P73177) Hypothetical ribonuclease sll1290 (EC 3.1.-.-)|
          Length = 666

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 183 KVRGTDRGVLLPEEGHQEVADVAQQLGKYCIDEPVKSPLI-FGDWE 317
           ++   ++ +L PE+ H++  D+ Q LGK    +  ++ LI  G W+
Sbjct: 179 RLEALEKFILFPEQNHRQALDILQTLGKPGRTDETQNLLIELGIWQ 224

>NODAL_HUMAN (Q96S42) Nodal homolog precursor|
          Length = 347

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 374 AERGPVNTSWGRRHRAIHHLP 312
           A+ G ++  WG+RHR  HHLP
Sbjct: 222 AQEGQLSWEWGKRHRR-HHLP 241

>UL14_HCMVA (P16756) Hypothetical protein UL14 precursor|
          Length = 327

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 377 PAERGPVNTSW-GRRHRAIHHLPVSEYKRGLDGLVDAVLAELLRDVGDLLVAFLRQQHA 204
           P+    +N  W G RHR +H++P      G  GL    L     D  +L V F+ Q  A
Sbjct: 188 PSRLRSINCGWEGERHRVVHYIP------GTSGL----LPSCEEDERELCVPFISQSIA 236

>PTPR2_MACNE (O02695) Receptor-type tyrosine-protein phosphatase N2 precursor|
           (EC 3.1.3.48) (R-PTP-N2) (M1851)
          Length = 1013

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 195 TDRGVLLPEEGHQEVADVAQQL 260
           TDR  L PEEG Q V DVA+ L
Sbjct: 514 TDRDPLRPEEGRQLVEDVARLL 535

>PRD11_HUMAN (Q9NQV5) PR domain-containing protein 11|
          Length = 504

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 153 PPELVDSILSKVRGTDRGVLLPEEGHQEVADVAQQLGKYCIDEPVKSPLIFGDWE 317
           PP  V      V   DR  L   +G + V D + +    C++E +    IFG +E
Sbjct: 119 PPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEVIPKGHIFGPYE 173

>BRPF1_HUMAN (P55201) Peregrin (Bromodomain and PHD finger-containing protein 1)|
           (BR140 protein)
          Length = 1214

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +3

Query: 249 AQQLGKYCIDEPVKSP----LIFGDWEVVYCSVATSPGGIYRTP 368
           AQQ G Y   EPV+        F   +  YC + T PG   R P
Sbjct: 414 AQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLP 457

>IL3RB_MOUSE (P26955) Cytokine receptor common beta chain precursor|
           (GM-CSF/IL-3/IL-5 receptor common beta-chain) (CD131
           antigen)
          Length = 896

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 138 PGLRAPPELVDSILSKVRGTDRGVLLPEEGHQEVADVAQQLGKYC 272
           PG  APP  V S  + + G  R  + P   H E   V QQ+G YC
Sbjct: 780 PGHPAPP--VASSPTVIPGEPREEVGPASPHPEGLLVLQQVGDYC 822

>IL3B2_MOUSE (P26954) Interleukin-3 receptor class 2 beta chain precursor|
           (Interleukin-3 receptor class II beta chain)
           (Colony-stimulating factor 2 receptor, beta 2 chain)
          Length = 878

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 138 PGLRAPPELVDSILSKVRGTDRGVLLPEEGHQEVADVAQQLGKYC 272
           PG  APP  V S  + + G  R  + P   H E   V QQ+G YC
Sbjct: 780 PGHPAPP--VASSPTVIPGEPREEVGPASPHPEGLLVLQQVGDYC 822

>RHG04_HUMAN (P98171) Rho-GTPase-activating protein 4 (Rho-GAP hematopoietic|
           protein C1) (p115)
          Length = 946

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 302 YKRGLDGLVDAVLAELLRDVGDLLVAFLRQQHAPVSPPHL 183
           ++RG D LV+   A  L  V  +L  + R    P+ PP L
Sbjct: 558 FERGEDPLVEGCTAHDLDSVAGVLKLYFRSLEPPLFPPDL 597

>LON_RHIME (O69177) ATP-dependent protease La (EC 3.4.21.53)|
          Length = 806

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 162 LVDSILSKVRGTDRGVLLPEEGHQEVADV 248
           L + +L+ +RG  + VL+PEE  +++AD+
Sbjct: 721 LKEKLLAALRGGIKKVLIPEENAKDLADI 749

>ARGD1_STAEQ (Q5HQK4) Acetylornithine aminotransferase 1 (EC 2.6.1.11) (ACOAT 1)|
          Length = 396

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -1

Query: 398 VVGLEHQPAERGPVNTSW-GRRHRAIHHLPVSEYKRGLDGLVDAVLAELLRDVGDLLVAF 222
           V G+E   AE    N ++ GR    +     +EY+RG   L+D        DV  L  A 
Sbjct: 124 VKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVEFGDVNQLKAAI 183

Query: 221 LRQQHAPVSPPHLGEDGVD 165
            +   A +  P  GE G++
Sbjct: 184 NKNTAAILVEPIQGEAGIN 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,391,387
Number of Sequences: 219361
Number of extensions: 750814
Number of successful extensions: 2608
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2608
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)