ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast72b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473815.1| Oryza sativa (japonica cultivar-group), predic... 172 6e-40
2dbj|AK104482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 6e-40
3dbj|AK059884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 6e-40
4emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4,... 115 1e-22
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
6ref|XM_535719.2| PREDICTED: Canis familiaris similar to Mitochon... 46 0.089
7ref|XM_465123.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
8gb|AY607842.1| Homo sapiens DNA cross-link repair 1A (PSO2 homol... 42 1.4
9gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete s... 42 1.4
10emb|AL592546.7| Human DNA sequence from clone RP11-211N11 on chr... 42 1.4
11dbj|AK090631.1| Homo sapiens cDNA FLJ33312 fis, clone BNGH420059... 42 1.4
12emb|CR593205.1| full-length cDNA clone CS0DL007YM24 of B cells (... 42 1.4
13ref|NM_134742.2| Drosophila melanogaster CG5001-RA (CG5001), mRNA 42 1.4
14gb|AY944821.1| Kuzuhaea moniliformis strain FSU2532 clone 1 beta... 42 1.4
15gb|AC008319.4|AC008319 Drosophila melanogaster, chromosome 2L, r... 42 1.4
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
19ref|NM_198514.2| Homo sapiens NHL repeat containing 2 (NHLRC2), ... 42 1.4
20dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
21dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
22gb|AE004988.1| Halobacterium sp. NRC-1 section 19 of 170 of the ... 42 1.4
23gb|BT021223.1| Drosophila melanogaster RH52407 full insert cDNA 42 1.4
24gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 ... 42 1.4
25gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.4
26gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
27ref|XM_476092.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
28ref|XM_467440.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
29ref|XM_464372.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
30gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
31gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
32ref|XM_370390.1| Magnaporthe grisea 70-15 chromosome II hypothet... 40 5.5
33gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.5
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.5
35ref|XM_805510.1| Trypanosoma cruzi strain CL Brener elongation f... 40 5.5
36gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.5
37gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.5
38emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.5
39gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence 40 5.5
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
41dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
42dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
44gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
45gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.5
46dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
47dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
48dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
49dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.5
50dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.5
51dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
52dbj|AK107391.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
53dbj|AK069743.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
54dbj|AK063720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
55gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.5
56gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
57dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 5.5
58gb|M64783.1|STMBAHBRP Streptomyces hygroscopicus acetyl-hydrolas... 40 5.5 
>ref|XM_473815.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 660

 Score =  172 bits (87), Expect = 6e-40
 Identities = 273/335 (81%)
 Strand = Plus / Plus

                                                                       
Query: 76  ccgctctccgccggccacgccgccggcgcgtcccctccgcccgatgctccctcgccgcgg 135
           |||||||||| ||||| ||||||||| ||| | |  ||| |||||||||||||||||| |
Sbjct: 62  ccgctctccggcggcctcgccgccggtgcgccacgcccgtccgatgctccctcgccgcag 121

                                                                       
Query: 136 cccccggcctccgggcgccgccggagctcgtcgactccatcctctccaaggtgaggggga 195
           | || || |||||||||||||| |||||| |||||||||||||||||||||||| ||| |
Sbjct: 122 cgccgggtctccgggcgccgcctgagctcatcgactccatcctctccaaggtgaagggaa 181

                                                                       
Query: 196 ctgaccggggcgtgctgctgccggaggaaggccaccaggaggtcgccgacgtcgcgcagc 255
           ||||||| || ||  |||||||  | || || || ||||| || || || ||||| |  |
Sbjct: 182 ctgaccgtggagttttgctgcccaaagatgggcatcaggaagttgctgatgtcgcactac 241

                                                                       
Query: 256 agctcggcaagtactgcatcgacgagcccgtcaagtccccgcttatattcggagactggg 315
           |||| | |||||||||||| ||||| || |||||||| || || ||||| ||||| ||||
Sbjct: 242 agcttgccaagtactgcatagacgatcctgtcaagtctccactaatatttggagagtggg 301

                                                                       
Query: 316 aggtggtgtattgctcggtggcgacgtccccaggaggtatttaccggacccctctcggcc 375
           |||| ||||| ||||| ||  |||| || || |||||  | |||||||| ||||||||||
Sbjct: 302 aggttgtgtactgctcagtaccgacatcaccgggagggctctaccggactcctctcggcc 361

                                              
Query: 376 ggctggtgttcaagaccgacgacatggttcaggtg 410
           | ||| | ||||| ||||| || |||| |||||||
Sbjct: 362 gcctgatattcaaaaccgatgagatggctcaggtg 396
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>dbj|AK104482.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-H04, full
           insert sequence
          Length = 946

 Score =  172 bits (87), Expect = 6e-40
 Identities = 273/335 (81%)
 Strand = Plus / Plus

                                                                       
Query: 76  ccgctctccgccggccacgccgccggcgcgtcccctccgcccgatgctccctcgccgcgg 135
           |||||||||| ||||| ||||||||| ||| | |  ||| |||||||||||||||||| |
Sbjct: 100 ccgctctccggcggcctcgccgccggtgcgccacgcccgtccgatgctccctcgccgcag 159

                                                                       
Query: 136 cccccggcctccgggcgccgccggagctcgtcgactccatcctctccaaggtgaggggga 195
           | || || |||||||||||||| |||||| |||||||||||||||||||||||| ||| |
Sbjct: 160 cgccgggtctccgggcgccgcctgagctcatcgactccatcctctccaaggtgaagggaa 219

                                                                       
Query: 196 ctgaccggggcgtgctgctgccggaggaaggccaccaggaggtcgccgacgtcgcgcagc 255
           ||||||| || ||  |||||||  | || || || ||||| || || || ||||| |  |
Sbjct: 220 ctgaccgtggagttttgctgcccaaagatgggcatcaggaagttgctgatgtcgcactac 279

                                                                       
Query: 256 agctcggcaagtactgcatcgacgagcccgtcaagtccccgcttatattcggagactggg 315
           |||| | |||||||||||| ||||| || |||||||| || || ||||| ||||| ||||
Sbjct: 280 agcttgccaagtactgcatagacgatcctgtcaagtctccactaatatttggagagtggg 339

                                                                       
Query: 316 aggtggtgtattgctcggtggcgacgtccccaggaggtatttaccggacccctctcggcc 375
           |||| ||||| ||||| ||  |||| || || |||||  | |||||||| ||||||||||
Sbjct: 340 aggttgtgtactgctcagtaccgacatcaccgggagggctctaccggactcctctcggcc 399

                                              
Query: 376 ggctggtgttcaagaccgacgacatggttcaggtg 410
           | ||| | ||||| ||||| || |||| |||||||
Sbjct: 400 gcctgatattcaaaaccgatgagatggctcaggtg 434
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>dbj|AK059884.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A09, full
           insert sequence
          Length = 973

 Score =  172 bits (87), Expect = 6e-40
 Identities = 273/335 (81%)
 Strand = Plus / Plus

                                                                       
Query: 76  ccgctctccgccggccacgccgccggcgcgtcccctccgcccgatgctccctcgccgcgg 135
           |||||||||| ||||| ||||||||| ||| | |  ||| |||||||||||||||||| |
Sbjct: 100 ccgctctccggcggcctcgccgccggtgcgccacgcccgtccgatgctccctcgccgcag 159

                                                                       
Query: 136 cccccggcctccgggcgccgccggagctcgtcgactccatcctctccaaggtgaggggga 195
           | || || |||||||||||||| |||||| |||||||||||||||||||||||| ||| |
Sbjct: 160 cgccgggtctccgggcgccgcctgagctcatcgactccatcctctccaaggtgaagggaa 219

                                                                       
Query: 196 ctgaccggggcgtgctgctgccggaggaaggccaccaggaggtcgccgacgtcgcgcagc 255
           ||||||| || ||  |||||||  | || || || ||||| || || || ||||| |  |
Sbjct: 220 ctgaccgtggagttttgctgcccaaagatgggcatcaggaagttgctgatgtcgcactac 279

                                                                       
Query: 256 agctcggcaagtactgcatcgacgagcccgtcaagtccccgcttatattcggagactggg 315
           |||| | |||||||||||| ||||| || |||||||| || || ||||| ||||| ||||
Sbjct: 280 agcttgccaagtactgcatagacgatcctgtcaagtctccactaatatttggagagtggg 339

                                                                       
Query: 316 aggtggtgtattgctcggtggcgacgtccccaggaggtatttaccggacccctctcggcc 375
           |||| ||||| ||||| ||  |||| || || |||||  | |||||||| ||||||||||
Sbjct: 340 aggttgtgtactgctcagtaccgacatcaccgggagggctctaccggactcctctcggcc 399

                                              
Query: 376 ggctggtgttcaagaccgacgacatggttcaggtg 410
           | ||| | ||||| ||||| || |||| |||||||
Sbjct: 400 gcctgatattcaaaaccgatgagatggctcaggtg 434
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>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09,
              complete sequence
          Length = 152732

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                          
Query: 76     ccgctctccgccggccacgccgccggcgcgtcccctccgcccgatgctccctcgccgcgg 135
              |||||||||| ||||| ||||||||| ||| | |  ||| |||||||||||||||||| |
Sbjct: 127430 ccgctctccggcggcctcgccgccggtgcgccacgcccgtccgatgctccctcgccgcag 127371

                                                                    
Query: 136    cccccggcctccgggcgccgccggagctcgtcgactccatcctctccaaggtga 189
              | || || |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 127370 cgccgggtctccgggcgccgcctgagctcatcgactccatcctctccaaggtga 127317



 Score = 46.1 bits (23), Expect = 0.089
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                          
Query: 312    tgggaggtggtgtattgctcggtggcgacgtccccaggaggtatttaccggacccctctc 371
              |||||||| ||||| ||||| ||  |||| || || |||||  | |||||||| ||||||
Sbjct: 126621 tgggaggttgtgtactgctcagtaccgacatcaccgggagggctctaccggactcctctc 126562

                                                     
Query: 372    ggccggctggtgttcaagaccgacgacatggttcaggtg 410
              ||||| ||| | ||||| ||||| || |||| |||||||
Sbjct: 126561 ggccgcctgatattcaaaaccgatgagatggctcaggtg 126523
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                            
Query: 76       ccgctctccgccggccacgccgccggcgcgtcccctccgcccgatgctccctcgccgcgg 135
                |||||||||| ||||| ||||||||| ||| | |  ||| |||||||||||||||||| |
Sbjct: 30723699 ccgctctccggcggcctcgccgccggtgcgccacgcccgtccgatgctccctcgccgcag 30723640

                                                                      
Query: 136      cccccggcctccgggcgccgccggagctcgtcgactccatcctctccaaggtga 189
                | || || |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 30723639 cgccgggtctccgggcgccgcctgagctcatcgactccatcctctccaaggtga 30723586



 Score = 46.1 bits (23), Expect = 0.089
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                            
Query: 312      tgggaggtggtgtattgctcggtggcgacgtccccaggaggtatttaccggacccctctc 371
                |||||||| ||||| ||||| ||  |||| || || |||||  | |||||||| ||||||
Sbjct: 30722890 tgggaggttgtgtactgctcagtaccgacatcaccgggagggctctaccggactcctctc 30722831

                                                       
Query: 372      ggccggctggtgttcaagaccgacgacatggttcaggtg 410
                ||||| ||| | ||||| ||||| || |||| |||||||
Sbjct: 30722830 ggccgcctgatattcaaaaccgatgagatggctcaggtg 30722792
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>ref|XM_535719.2| PREDICTED: Canis familiaris similar to Mitochondrial precursor
           proteins import receptor (Translocase of outer membrane
           TOM70) (LOC478541), mRNA
          Length = 2709

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 127 tcgccgcggcccccggcctccgggcgccgcc 157
           ||||||||||||||||||||| | |||||||
Sbjct: 812 tcgccgcggcccccggcctcccgccgccgcc 782
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>ref|XM_465123.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 684

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 126 ctcgccgcggcccccggcctccgggcgccgccg 158
           |||||||||||| |||||||||| ||| |||||
Sbjct: 391 ctcgccgcggccgccggcctccgcgcggcgccg 359
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>gb|AY607842.1| Homo sapiens DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)
            (DCLRE1A) gene, complete cds
          Length = 23104

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 137  ccccggcctccgggcgccgcc 157
            |||||||||||||||||||||
Sbjct: 1205 ccccggcctccgggcgccgcc 1225
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>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence
          Length = 128493

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 107   cccctccgcccgatgctccctcgcc 131
             ||||||||||| |||||||||||||
Sbjct: 19003 cccctccgcccaatgctccctcgcc 18979
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>emb|AL592546.7| Human DNA sequence from clone RP11-211N11 on chromosome 10 Contains the
             3' end of the CASP7 gene for caspase 7 apoptosis-related
             cysteine protease, a novel gene (FLJ23537), the DCLRE1A
             gene for DNA cross-link repair 1A (PSO2 homolog S.
             cerevisiae), the 5' end of the gene for a novel NHL repeat
             domain containing protein (FLJ33312), a novel gene and a
             CpG island, complete sequence
          Length = 174776

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   ccccggcctccgggcgccgcc 157
             |||||||||||||||||||||
Sbjct: 19688 ccccggcctccgggcgccgcc 19708
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>dbj|AK090631.1| Homo sapiens cDNA FLJ33312 fis, clone BNGH42005968, weakly similar
           to DIPZ PROTEIN
          Length = 2550

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 137 ccccggcctccgggcgccgcc 157
           |||||||||||||||||||||
Sbjct: 235 ccccggcctccgggcgccgcc 215
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>emb|CR593205.1| full-length cDNA clone CS0DL007YM24 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 2336

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 137 ccccggcctccgggcgccgcc 157
           |||||||||||||||||||||
Sbjct: 23  ccccggcctccgggcgccgcc 3
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>ref|NM_134742.2| Drosophila melanogaster CG5001-RA (CG5001), mRNA
          Length = 1830

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 222  gaaggccaccaggaggtcgcc 242
            |||||||||||||||||||||
Sbjct: 1404 gaaggccaccaggaggtcgcc 1384
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>gb|AY944821.1| Kuzuhaea moniliformis strain FSU2532 clone 1 beta-tubulin (btub)
           gene, partial cds
          Length = 1162

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 gagctcgtcgactccatcctc 179
           |||||||||||||||||||||
Sbjct: 287 gagctcgtcgactccatcctc 307
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>gb|AC008319.4|AC008319 Drosophila melanogaster, chromosome 2L, region 21E-22A, BAC clone
              BACR38A03, complete sequence
          Length = 189315

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 222    gaaggccaccaggaggtcgcc 242
              |||||||||||||||||||||
Sbjct: 119555 gaaggccaccaggaggtcgcc 119575
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 126      ctcgccgcggcccccggcctccgggcgccgccg 158
                |||||||||||| |||||||||| ||| |||||
Sbjct: 11714983 ctcgccgcggccgccggcctccgcgcggcgccg 11714951



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 239      cgccgacgtcgcgcagcagc 258
                ||||||||||||||||||||
Sbjct: 29534574 cgccgacgtcgcgcagcagc 29534555



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 240     gccgacgtcgcgcagcagctcggc 263
               ||||||||||||| ||||||||||
Sbjct: 4785418 gccgacgtcgcgcggcagctcggc 4785441
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 126      ctcgccgcggcccccggcctccgggcgccgccg 158
                |||||| |||||||||||||||| ||| |||||
Sbjct: 30470516 ctcgccacggcccccggcctccgcgcggcgccg 30470548
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>dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0435H01
          Length = 160141

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 126   ctcgccgcggcccccggcctccgggcgccgccg 158
             |||||| |||||||||||||||| ||| |||||
Sbjct: 98779 ctcgccacggcccccggcctccgcgcggcgccg 98811
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>ref|NM_198514.2| Homo sapiens NHL repeat containing 2 (NHLRC2), mRNA
          Length = 2550

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 137 ccccggcctccgggcgccgcc 157
           |||||||||||||||||||||
Sbjct: 235 ccccggcctccgggcgccgcc 215
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>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0010K08
          Length = 184760

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 126    ctcgccgcggcccccggcctccgggcgccgccg 158
              |||||||||||| |||||||||| ||| |||||
Sbjct: 161272 ctcgccgcggccgccggcctccgcgcggcgccg 161240
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>dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0477B05
          Length = 142166

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 126   ctcgccgcggcccccggcctccgggcgccgccg 158
             |||||||||||| |||||||||| ||| |||||
Sbjct: 22873 ctcgccgcggccgccggcctccgcgcggcgccg 22841
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>gb|AE004988.1| Halobacterium sp. NRC-1 section 19 of 170 of the complete genome
          Length = 12549

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   gaggtcgccgacgtcgcgcag 254
             |||||||||||||||||||||
Sbjct: 11544 gaggtcgccgacgtcgcgcag 11524
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>gb|BT021223.1| Drosophila melanogaster RH52407 full insert cDNA
          Length = 1847

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 222  gaaggccaccaggaggtcgcc 242
            |||||||||||||||||||||
Sbjct: 1403 gaaggccaccaggaggtcgcc 1383
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>gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 of 83 of the complete
              sequence
          Length = 314549

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 222    gaaggccaccaggaggtcgcc 242
              |||||||||||||||||||||
Sbjct: 276137 gaaggccaccaggaggtcgcc 276117
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 239     cgccgacgtcgcgcagcagct 259
               |||||||||||||||||||||
Sbjct: 3801231 cgccgacgtcgcgcagcagct 3801211



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     ccgccggccacgccgccggc 102
              ||||||||||||||||||||
Sbjct: 131537 ccgccggccacgccgccggc 131556
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>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07,
             complete sequence
          Length = 114135

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   cgccgccggagctcgtcgac 170
             ||||||||||||||||||||
Sbjct: 90520 cgccgccggagctcgtcgac 90501
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>ref|XM_476092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 cgccgccggagctcgtcgac 170
           ||||||||||||||||||||
Sbjct: 472 cgccgccggagctcgtcgac 453
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>ref|XM_467440.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2475

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 239  cgccgacgtcgcgcagcagc 258
            ||||||||||||||||||||
Sbjct: 2121 cgccgacgtcgcgcagcagc 2140
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>ref|XM_464372.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1545

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 gccgacgtcgcgcagcagctcggc 263
           ||||||||||||| ||||||||||
Sbjct: 187 gccgacgtcgcgcggcagctcggc 210
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>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007H22, complete sequence
          Length = 160938

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   cgccgccggagctcgtcgac 170
             ||||||||||||||||||||
Sbjct: 28100 cgccgccggagctcgtcgac 28119
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>gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636E04,
             complete sequence
          Length = 141171

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   cgccgccggagctcgtcgac 170
             ||||||||||||||||||||
Sbjct: 21330 cgccgccggagctcgtcgac 21311
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>ref|XM_370390.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein
            (MG06887.4) partial mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 203  gggcgtgctgctgccggagg 222
            ||||||||||||||||||||
Sbjct: 1053 gggcgtgctgctgccggagg 1034
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    ggtcgccgacgtcgcgcagc 255
              ||||||||||||||||||||
Sbjct: 546546 ggtcgccgacgtcgcgcagc 546527
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      gccggccacgccgccggcgc 104
               ||||||||||||||||||||
Sbjct: 6127510 gccggccacgccgccggcgc 6127529
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>ref|XM_805510.1| Trypanosoma cruzi strain CL Brener elongation factor 1-gamma
           (EF-1-gamma) (Tc00.1047053509081.10) partial mRNA
          Length = 624

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 232 aggaggtcgccgacgtcgcg 251
           ||||||||||||||||||||
Sbjct: 501 aggaggtcgccgacgtcgcg 520
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 369     ctcggccggctggtgttcaagaccgacgacat 400
               |||||||||||| |||||||  ||||||||||
Sbjct: 2787066 ctcggccggctgctgttcaatgccgacgacat 2787035
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 236     ggtcgccgacgtcgcgcagcagctcggc 263
               |||||||| ||||||||||| |||||||
Sbjct: 2039878 ggtcgccgccgtcgcgcagcggctcggc 2039905
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    ggtcgccgacgtcgcgcagc 255
              ||||||||||||||||||||
Sbjct: 355198 ggtcgccgacgtcgcgcagc 355179
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>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence
          Length = 178815

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    cgccgcggcccccggcctcc 147
              ||||||||||||||||||||
Sbjct: 106892 cgccgcggcccccggcctcc 106911
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     cgccgccggagctcgtcgac 170
               ||||||||||||||||||||
Sbjct: 6858751 cgccgccggagctcgtcgac 6858732
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     cgccgccggagctcgtcgac 170
               ||||||||||||||||||||
Sbjct: 8160070 cgccgccggagctcgtcgac 8160051
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     cgccgccggagctcgtcgac 170
               ||||||||||||||||||||
Sbjct: 5883756 cgccgccggagctcgtcgac 5883737
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      gccggccacgccgccggcgc 104
               ||||||||||||||||||||
Sbjct: 6126723 gccggccacgccgccggcgc 6126742
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>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11,
              complete sequence
          Length = 174865

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     gccggccacgccgccggcgc 104
              ||||||||||||||||||||
Sbjct: 120986 gccggccacgccgccggcgc 121005
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 88      ggccacgccgccggcgcgtc 107
               ||||||||||||||||||||
Sbjct: 2156221 ggccacgccgccggcgcgtc 2156202
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>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1115_B01
          Length = 129329

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 240   gccgacgtcgcgcagcagctcggc 263
             ||||||||||||| ||||||||||
Sbjct: 66008 gccgacgtcgcgcggcagctcggc 66031
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>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1073_F05
          Length = 124252

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 240   gccgacgtcgcgcagcagctcggc 263
             ||||||||||||| ||||||||||
Sbjct: 27577 gccgacgtcgcgcggcagctcggc 27600
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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1038_A06
          Length = 147836

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    cgccgacgtcgcgcagcagc 258
              ||||||||||||||||||||
Sbjct: 129604 cgccgacgtcgcgcagcagc 129585
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   aggaggtcgccgacgtcgcg 251
             ||||||||||||||||||||
Sbjct: 81810 aggaggtcgccgacgtcgcg 81791
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      cgccggccacgccgccggcg 103
               ||||||||||||||||||||
Sbjct: 1527694 cgccggccacgccgccggcg 1527675
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>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0624H09
          Length = 158719

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   cgccgccggagctcgtcgac 170
             ||||||||||||||||||||
Sbjct: 52433 cgccgccggagctcgtcgac 52414
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>dbj|AK107391.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C12, full
            insert sequence
          Length = 2475

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 239  cgccgacgtcgcgcagcagc 258
            ||||||||||||||||||||
Sbjct: 2121 cgccgacgtcgcgcagcagc 2140
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>dbj|AK069743.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028G13, full
           insert sequence
          Length = 1368

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 cgccgccggagctcgtcgac 170
           ||||||||||||||||||||
Sbjct: 684 cgccgccggagctcgtcgac 665
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>dbj|AK063720.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C12, full
           insert sequence
          Length = 597

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 237 gtcgccgacgtcgcgcagca 256
           ||||||||||||||||||||
Sbjct: 345 gtcgccgacgtcgcgcagca 364
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 247     tcgcgcagcagctcggcaag 266
               ||||||||||||||||||||
Sbjct: 1210022 tcgcgcagcagctcggcaag 1210003
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     cgccgccggagctcgtcgac 170
               ||||||||||||||||||||
Sbjct: 6925218 cgccgccggagctcgtcgac 6925199
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     ctccgccggccacgccgccg 100
              ||||||||||||||||||||
Sbjct: 392950 ctccgccggccacgccgccg 392931
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>gb|M64783.1|STMBAHBRP Streptomyces hygroscopicus acetyl-hydrolase (bah), thioesterase (ORF1
            and 2), transport protein (ORF3), and regulatory protein
            (brpA) genes, complete cds
          Length = 5000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 130  ccgcggcccccggcctccgggcgc 153
            ||||||||||||||| ||||||||
Sbjct: 2899 ccgcggcccccggccgccgggcgc 2922


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,788,883
Number of Sequences: 3902068
Number of extensions: 2788883
Number of successful extensions: 57104
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54928
Number of HSP's gapped (non-prelim): 2176
length of query: 410
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 388
effective length of database: 17,147,199,772
effective search space: 6653113511536
effective search space used: 6653113511536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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