ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast72b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YA28_SCHPO (Q09699) Hypothetical protein C2F7.08c in chromosome I 29 6.0
2GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H... 29 6.0

>YA28_SCHPO (Q09699) Hypothetical protein C2F7.08c in chromosome I|
          Length = 632

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 297 G*DRDPTRVRRVYGAAGHGVRVPPVR-----HGTLLRGDAPPPPARFLQS 431
           G DR+  R+RR  G A HG+ +P +R     H +L    + P    F+ +
Sbjct: 375 GYDREARRMRRRQGRAKHGIMLPDLRDIPKIHRSLFPSSSVPSDDDFMHA 424



to top

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 1   PSPAKNPNPNTDSNRSPSPIRSDAMLP 81
           PSP+ +P+P+   + SPSPI S +  P
Sbjct: 351 PSPSPSPSPSPSPSPSPSPIPSPSPKP 377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,712,732
Number of Sequences: 219361
Number of extensions: 947443
Number of successful extensions: 3447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3415
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
to top