ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast72a07 |
|---|---|
| Clone Library Name | barley_pub |
>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding| protein homolog 2) Length = 448 Score = 127 bits (319), Expect = 6e-30 Identities = 67/88 (76%), Positives = 69/88 (78%) Frame = +3 Query: 141 AAPSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRP 320 AAPSRVGRKQR+QKGPEAAARLPNVAP MEEEFVAAQERLRP Sbjct: 36 AAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLLKLERVKDYLLMEEEFVAAQERLRP 95 Query: 321 TEEKTEEDRSKVDDLRGTPMSVGSLEEI 404 TE+KTEEDRSKVDDLRGTPMSVGSLEEI Sbjct: 96 TEDKTEEDRSKVDDLRGTPMSVGSLEEI 123
>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)| Length = 439 Score = 97.4 bits (241), Expect = 7e-21 Identities = 48/86 (55%), Positives = 59/86 (68%) Frame = +3 Query: 147 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 326 P+RVG+K+RR KGP+AA +LP V P ME+EF+ QERL+P + Sbjct: 29 PTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQD 88 Query: 327 EKTEEDRSKVDDLRGTPMSVGSLEEI 404 EK EE+RSKVDDLRGTPMSVG+LEEI Sbjct: 89 EKNEEERSKVDDLRGTPMSVGNLEEI 114
>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 94.4 bits (233), Expect = 6e-20 Identities = 46/86 (53%), Positives = 60/86 (69%) Frame = +3 Query: 147 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 326 P+RVG+K+++ KGP+AA++LP V P MEEEF+ QE+++P E Sbjct: 30 PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89 Query: 327 EKTEEDRSKVDDLRGTPMSVGSLEEI 404 EK EE+RSKVDDLRGTPMSVG+LEEI Sbjct: 90 EKQEEERSKVDDLRGTPMSVGTLEEI 115
>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 94.4 bits (233), Expect = 6e-20 Identities = 46/86 (53%), Positives = 60/86 (69%) Frame = +3 Query: 147 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 326 P+RVG+K+++ KGP+AA++LP V P MEEEF+ QE+++P E Sbjct: 30 PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89 Query: 327 EKTEEDRSKVDDLRGTPMSVGSLEEI 404 EK EE+RSKVDDLRGTPMSVG+LEEI Sbjct: 90 EKQEEERSKVDDLRGTPMSVGTLEEI 115
>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 94.4 bits (233), Expect = 6e-20 Identities = 46/86 (53%), Positives = 60/86 (69%) Frame = +3 Query: 147 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 326 P+RVG+K+++ KGP+AA++LP V P MEEEF+ QE+++P E Sbjct: 30 PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89 Query: 327 EKTEEDRSKVDDLRGTPMSVGSLEEI 404 EK EE+RSKVDDLRGTPMSVG+LEEI Sbjct: 90 EKQEEERSKVDDLRGTPMSVGTLEEI 115
>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4| Length = 443 Score = 92.0 bits (227), Expect = 3e-19 Identities = 44/86 (51%), Positives = 59/86 (68%) Frame = +3 Query: 147 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 326 PSR+G+K++ KGP+AA++LP V P ME+EF+ QERL+P E Sbjct: 33 PSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQERLKPQE 92 Query: 327 EKTEEDRSKVDDLRGTPMSVGSLEEI 404 E+ EE+R+KVD+LRGTPM+VGSLEEI Sbjct: 93 ERQEEERAKVDELRGTPMAVGSLEEI 118
>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 91.7 bits (226), Expect = 4e-19 Identities = 45/86 (52%), Positives = 59/86 (68%) Frame = +3 Query: 147 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 326 P+RVG+K+++ KGP+AA++ P V P MEEEF+ QE+++P E Sbjct: 30 PTRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89 Query: 327 EKTEEDRSKVDDLRGTPMSVGSLEEI 404 EK EE+RSKVDDLRGTPMSVG+LEEI Sbjct: 90 EKQEEERSKVDDLRGTPMSVGTLEEI 115
>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)| Length = 448 Score = 85.5 bits (210), Expect = 3e-17 Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 1/87 (1%) Frame = +3 Query: 147 PSRVGRKQRR-QKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPT 323 P+R GR++++ Q GP+A+A+LP V P MEEE+V QERL+P Sbjct: 36 PTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQ 95 Query: 324 EEKTEEDRSKVDDLRGTPMSVGSLEEI 404 +E+T+E+R++VD++RGTPMSVG+LEEI Sbjct: 96 DERTQEERNRVDEIRGTPMSVGTLEEI 122
>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding| homolog 5) Length = 437 Score = 67.0 bits (162), Expect = 1e-11 Identities = 33/85 (38%), Positives = 52/85 (61%) Frame = +3 Query: 150 SRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTEE 329 S+ GRK+R+ GP A +LPN+ P +EEEFV+ E L+P E+ Sbjct: 29 SKFGRKKRKG-GPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEK 87 Query: 330 KTEEDRSKVDDLRGTPMSVGSLEEI 404 K EE++ +++++RG P+S+G+LEEI Sbjct: 88 KQEEEKKQLEEIRGNPLSIGTLEEI 112
>TPMM_TRICO (P15846) Tropomyosin, muscle| Length = 284 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 279 MEEEFVAAQERLRPTEEKTEEDRSKVDD 362 +EEE A+ERL+ EK EE VD+ Sbjct: 95 LEEELERAEERLKIATEKLEEATHNVDE 122
>TPM1_CAEEL (Q22866) Tropomyosin isoforms 1/2| Length = 284 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 279 MEEEFVAAQERLRPTEEKTEEDRSKVDD 362 +EEE A+ERL+ EK EE VD+ Sbjct: 95 LEEELERAEERLKIATEKLEEATHNVDE 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.297 0.118 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,067,307 Number of Sequences: 219361 Number of extensions: 151061 Number of successful extensions: 450 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 421 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 440 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 44 (21.9 bits)
