>ENO_THEVO (Q979Z9) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 401

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 295 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRSRSTS 116
           D +Y+TNPD    GI+   T  V    +  G  +K   A+S +        V+HRS  T+
Sbjct: 301 DDLYTTNPDRIRKGIELGSTNAVLIKVNQIGTLTKAQEAASLASSAGLKNVVSHRSGETT 360

Query: 115 PD-MADLAI 92
            D +A L++
Sbjct: 361 DDFLAHLSV 369

>Y1903_CORGL (Q6M4B7) Hypothetical RNA methyltransferase Cgl1903/cg2084 (EC|
           2.1.1.-)
          Length = 412

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 80  IGAKDGKVSHVRASAPASMCDLQIGARNHRWAAGE 184
           IG  DG+V  V+   P  + D++I     +WA GE
Sbjct: 27  IGHHDGRVIFVKGGIPGDVVDVEIAQLKKKWARGE 61

>ENO_THEAC (Q9HJT1) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 401

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -1

Query: 295 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRSRSTS 116
           D +Y+TNPD    G++   T  V    +  G  S    A + +        V+HRS  T+
Sbjct: 301 DDLYTTNPDRIRKGVEKKSTNAVLIKVNQIGTLSAAREAVAVATFAGMKNIVSHRSGETT 360

Query: 115 PD-MADLAI-FGPNVQET 68
            D +A L++ FG    +T
Sbjct: 361 DDFLAHLSVAFGSTFVKT 378

>HMX2_MOUSE (P43687) Homeobox protein HMX2 (Homeobox protein Nkx-5.2)|
          Length = 273

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/95 (24%), Positives = 33/95 (34%)
 Frame = -1

Query: 307 CFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRS 128
           CFCPD      P  +H      P    P+   G GP +      +P + PS         
Sbjct: 65  CFCPDPHGPKEPSPKHHTPIPFPCLGTPKGSGGAGPAAS---ERTPFLSPS--------- 112

Query: 127 RSTSPDMADLAIFGPNVQETRTRLIRRRAPDPVPE 23
                         P+ +E + RL+   +P P PE
Sbjct: 113 -------------HPDFKEEKERLLPAGSPSPGPE 134

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 26/91 (28%), Positives = 39/91 (42%)
 Frame = -1

Query: 382  RCAMDASLPRRTA*APSGTTSTMSPCFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCG 203
            R  M   +PR +   P      +   F P G+    P  +H+ +  A      R+ DG  
Sbjct: 2507 RRPMSMEMPRPSNNPPLNNPVGLPQHFPPQGL----PVQQHNILGQAFIELRHRAPDG-- 2560

Query: 202  PRSKLPFASSPSVIPSANLQVAHRSRSTSPD 110
             RS+LPFA+SPS +  +     H +    PD
Sbjct: 2561 -RSRLPFAASPSSVIESPSHPRHGNFLPRPD 2590

>CASL_HUMAN (Q14511) Enhancer of filamentation 1 (HEF1) (CRK-associated|
           substrate-related protein) (CAS-L) (CasL) (p105)
           (Protein NEDD9) (NY-REN-12 antigen)
          Length = 834

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = -1

Query: 304 FCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRSR 125
           F P    +  PD+R +G+ D P TC         P  K         IP A   VA R +
Sbjct: 243 FPPPMRQAGRPDLRPEGVYDIPPTCTK-------PAGKDLHVKYNCDIPGAAEPVARRHQ 295

Query: 124 STSPD 110
           S SP+
Sbjct: 296 SLSPN 300

>NAS9_HORVU (Q9XFB7) Nicotianamine synthase 9 (EC 2.5.1.43)|
           (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-
           adenosyl-methionine 3-amino-3-carboxypropyltransferase
           9)
          Length = 340

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -1

Query: 172 PSVIPSANLQVAHRSRSTS---PDMADLAIFGPNVQETRTRLIR 50
           PS+ PS  +        TS   P   D+   GP+ QE R RLIR
Sbjct: 33  PSLSPSPEVNALFTELVTSCIPPSTVDVDALGPDAQEMRARLIR 76

>VLPE_MYCHR (Q49537) Variant surface antigen E precursor (VLPE prolipoprotein)|
          Length = 243

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = -1

Query: 334 SGTTSTMSPCFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPS 155
           SG  S+ S    PDG +S NP          PTT  P+  +   P +  P  S+PS   +
Sbjct: 81  SGNGSSNSSVSTPDGQHS-NPS--------NPTTSDPKESNPSNPTTSDPKESNPSNPTT 131

Query: 154 ANLQVAHRSRSTSPD 110
           ++ Q ++ S  T+ D
Sbjct: 132 SDGQHSNPSNPTTSD 146

>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
 Frame = -1

Query: 358  PRRTA*APSGTTSTMSPCFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFA 179
            P+ T+ A    T+  S    P+ +  T P+++     D P T  P S    G +S+    
Sbjct: 1139 PKPTSQATRSRTNRSS-VKTPEPVVPTAPELQPSTSTDQPVTSEPTSQVTRGRKSRSSVK 1197

Query: 178  SSPSVIPSANLQVAHRSRSTSPDMADLAIFGPNVQETRTRLIRR--RAPDPV 29
            +  +V+P+A L++   + +  P  ++     P  Q TR R  R   + P+PV
Sbjct: 1198 TPETVVPTA-LELQPSTSTDRPVTSE-----PTSQATRGRKNRSSVKTPEPV 1243

>GNTP_ECOLI (P0AC94) High-affinity gluconate transporter (Gluconate permease 3)|
           (Gnt-III system)
          Length = 447

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 186 GNFERGPQPSQLRGTQVVGASSIPSWRTSGFVEYIPS 296
           GN ER P PS L+  Q V  +++PS+  S  V  IP+
Sbjct: 201 GNLER-PTPSFLKADQPVDMNNLPSFGVSILVPLIPA 236

>GNTP_ECO57 (P0AC95) High-affinity gluconate transporter (Gluconate permease 3)|
           (Gnt-III system)
          Length = 447

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 186 GNFERGPQPSQLRGTQVVGASSIPSWRTSGFVEYIPS 296
           GN ER P PS L+  Q V  +++PS+  S  V  IP+
Sbjct: 201 GNLER-PTPSFLKADQPVDMNNLPSFGVSILVPLIPA 236

>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640|
          Length = 1069

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 19/75 (25%), Positives = 27/75 (36%)
 Frame = -1

Query: 337 PSGTTSTMSPCFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIP 158
           P+   ++  P F P    ++N     D + +      P    G GPR   PF  SP   P
Sbjct: 12  PNSQQNSGPPNFYPGSQGNSN--ALADNMQNLSLNRPPPMMPGSGPRPPPPFGQSPQPFP 69

Query: 157 SANLQVAHRSRSTSP 113
             +       R  SP
Sbjct: 70  QQSPSYGAPQRGPSP 84

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 286 YSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQV 140
           ++ N D RH G   + T+C        GP +KLP ++  S +  A  Q+
Sbjct: 63  FTNNWDPRHTGFSPSMTSCSKEHRQ--GPATKLPSSNYNSDVEDARFQI 109

>DNA2_SCHPO (Q9URU2) DNA replication ATP-dependent helicase dna2 (EC 3.6.1.-)|
          Length = 1398

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 274 PDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVI 161
           PD+  D IDD        SCDGC P     F+S  +V+
Sbjct: 332 PDINSDFIDDWDD-----SCDGCTPGELCEFSSEYTVL 364

>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)|
           (Tracheobronchial mucin) (TBM) (Major airway
           glycoprotein) (Fragment)
          Length = 1233

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 307 CFCPDGM--YSTNPDVRHDGIDDAPTTCVPRSCDGC-GPRSK 191
           CFCP+GM  +ST+  V           CVP  C  C GP  +
Sbjct: 833 CFCPEGMTLFSTSAQV-----------CVPTGCPRCLGPHGE 863

>RMRP_YEAST (P40993) RNase MRP protein component SNM1|
          Length = 198

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 247 DAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRSRSTSPDMADLAIFGPNVQET 68
           + P  C+  +C  C  +SKL    S  V+P+    V+    STS      A+  P   +T
Sbjct: 96  EGPKKCIQVNCLNC-EKSKLFEWKSEFVVPTFGQDVSPMINSTSSGKVSYAVKKPQKSKT 154

Query: 67  RT 62
            T
Sbjct: 155 ST 156

>HIPK3_HUMAN (Q9H422) Homeodomain-interacting protein kinase 3 (EC 2.7.11.1)|
            (Homolog of protein kinase YAK1) (Fas-interacting
            serine/threonine-protein kinase) (FIST) (Androgen
            receptor-interacting nuclear protein kinase) (ANPK)
          Length = 1215

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = -1

Query: 385  RRCAMDASLPRRTA*APSGTTSTMSPCFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGC 206
            R C++  S P  T    S   S+ SPC  P+ M     +   D +D +PT+      D  
Sbjct: 907  RMCSL--SSPDSTLSTSSSGQSSPSPCKRPNSMSDEEQESSCDTVDGSPTS------DSS 958

Query: 205  GPRSKLPFASSPSV 164
            G  S  PFA S  V
Sbjct: 959  GHDS--PFAESTFV 970

>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like|
           protein)
          Length = 349

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
 Frame = -1

Query: 358 PRRTA*APSGTTSTMSPCFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCD--GCGPRSKLP 185
           P  +  AP  +TS +SP   P  M S    +        P +  P +       P+S  P
Sbjct: 213 PTTSPPAPPKSTSPVSPSSAP--MTSPPAPMAPKSSSTIPPSSAPMTSPPGSMAPKSSSP 270

Query: 184 FASSPSVIPSANLQVAHRSRSTSPDMADLAIFGPN 80
            ++SP+V PS  L     + S+  D    +  GP+
Sbjct: 271 VSNSPTVSPS--LAPGGSTSSSPSDSPSGSAMGPS 303

>VE2_CRPVK (P03121) Probable regulatory protein E2|
          Length = 390

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 250 DDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRSRSTSPDMADLA 95
           ++AP + VP +    GP++        S  P    + A + +  +PD AD A
Sbjct: 216 EEAPDSAVPAAQKKTGPKTTRTLGRRRSRSPGVQRRPAKQRKQAAPDEADSA 267

>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +1

Query: 76  VHWGQRWQ-GQPCPG*CSCF 132
           V W Q WQ   PCPG C C+
Sbjct: 15  VLWLQAWQVAAPCPGACVCY 34

>ENO_DESVH (Q72F92) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 437

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -1

Query: 295 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRSRSTS 116
           D ++ TNPD+   GID+     +    +  G  ++       +   +    ++HRS  T 
Sbjct: 312 DDIFVTNPDILAQGIDEGVANSILIKLNQIGTLTETLDTIEMAKQAAYTTVISHRSGETE 371

Query: 115 PD-MADLAIFGPNVQETRT 62
              +ADLA+ G N  + +T
Sbjct: 372 DHFIADLAV-GLNAGQIKT 389

>PDE3A_RAT (Q62865) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A)
           (CGI-PDE A)
          Length = 1141

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
 Frame = -2

Query: 144 RSHIEAGALAR---TWLT------LPSLAPMYKKRGRD*SDEEHRTPSPS 22
           R  +  G L R   TW T      LP+L P   +R R  S + H  PSPS
Sbjct: 423 RRSLPPGLLRRVSSTWTTTTSATGLPTLEPAPVRRDRSASIKPHEAPSPS 472

>PDE3A_MOUSE (Q9Z0X4) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A)
           (CGI-PDE A)
          Length = 1141

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
 Frame = -2

Query: 144 RSHIEAGALAR---TWLT------LPSLAPMYKKRGRD*SDEEHRTPSPS 22
           R  +  G L R   TW T      LP+L P   +R R  S + H  PSPS
Sbjct: 423 RRSLPPGLLRRVSSTWTTTTSATGLPTLEPAPVRRDRSASIKPHEAPSPS 472

>CARB_HAEDU (Q7VP67) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1075

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 121 TSPDMADLAIFGPNVQETRTRLIRRRAPDPV 29
           T PDMAD+    P   +T  ++I +  PD +
Sbjct: 56  TDPDMADVTYIEPIQWQTLEKIIEKERPDAI 86

>ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G)|
          Length = 4377

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -1

Query: 238  TTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRSRSTSPDMADL 98
            T   P+S +  GP+        P VI     +V H  RS  P   D+
Sbjct: 2137 TPSAPQSAETTGPKPLFHEVPIPPVITETRTEVVHVIRSYDPSAGDV 2183

>IGW2_HETFR (P83743) IgW chain C region, secreted form 2 (Fragment)|
          Length = 133

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 247 DAPTTCVPRSCDGCGPR 197
           + P TC P SC GC P+
Sbjct: 88  NTPCTCPPSSCSGCMPK 104

>CDC12_SCHPO (Q10059) Cell division control protein 12|
          Length = 1841

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = -1

Query: 277 NPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQV-AHRSRSTSPDMAD 101
           +P+  +D I   PT    R+     P+SK  +   PS I S +  +  ++S+S +     
Sbjct: 9   DPNFSYDSILSTPTPSARRTIGPRAPKSKTTYHKPPSSIESVSTLIQPNKSQSVTSPYVK 68

Query: 100 LAIFGPNVQETRTRLIRRRAPDPVPES 20
              F      +  +   + +  P+P++
Sbjct: 69  QFTFSSKEYNSHNKHALQNSQLPLPKT 95

>SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1137

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -1

Query: 334  SGTTSTMSPCFCPD--GMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVI 161
            S + + +SP   P    +YS       +G   +P+  +P S D   P S+ P +S+PS +
Sbjct: 960  SSSKAELSPSMAPQETSLYSL-----FEGTPWSPS--LPASSDHSTPASQSPHSSNPSSL 1012

Query: 160  PSANLQVAHRS 128
            PS+     H S
Sbjct: 1013 PSSPPTHNHNS 1023

>CARB_ZYMMO (O50236) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1112

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 121 TSPDMADLAIFGPNVQETRTRLIRRRAPD 35
           T PDMAD     P   E   R+I +  PD
Sbjct: 56  TDPDMADATYIEPITPEVVARIIEKERPD 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,548,613
Number of Sequences: 219361
Number of extensions: 920754
Number of successful extensions: 3346
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3339
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)