Clone Information

BLAST Search Result

Clone Name	bast71h06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RLA0_CHERU (P29764) 60S acidic ribosomal protein P0 (Light-induc...	34	0.097
2	HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB	33	0.17
3	SUH_MOUSE (P31266) Recombining binding protein suppressor of hai...	32	0.37
4	VE2_HPV2A (P25482) Regulatory protein E2	31	0.63
5	K0553_HUMAN (Q9UKJ3) Protein KIAA0553	31	0.82
6	SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S...	30	1.8
7	VMSA_HBVWI (P17397) Major surface antigen precursor	30	1.8
8	NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alph...	30	1.8
9	EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear ...	29	2.4
10	PALC_NEUCR (Q7SEM8) pH-response regulator protein palC	29	2.4
11	EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear a...	29	2.4
12	T22D4_HUMAN (Q9Y3Q8) TSC22 domain family protein 4 (TSC22-relate...	29	3.1
13	VMSA_HBVYW (P03138) Major surface antigen precursor	29	3.1
14	VMSA_HBVIA (P24025) Major surface antigen precursor	29	3.1
15	FLVC2_MOUSE (Q91X85) Feline leukemia virus subgroup C receptor-r...	29	3.1
16	SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor	29	3.1
17	ATI2_HHV11 (P10230) Alpha trans-inducing factor 78 kDa protein	29	3.1
18	VMSA_HBVWO (P17399) Major surface antigen precursor	28	4.1
19	VMSA_HBVWJ (P17398) Major surface antigen precursor	28	4.1
20	VMSA_HBVIL (P12911) Major surface antigen precursor	28	4.1
21	EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)	28	4.1
22	SUH_HUMAN (Q06330) Recombining binding protein suppressor of hai...	28	4.1
23	YKF4_YEAST (P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4...	28	4.1
24	FBIC_MYCPA (Q73WP9) FO synthase (EC 2.5.1.-) (7,8-didemethyl-8-h...	28	5.3
25	BCCP_SOYBN (Q42783) Biotin carboxyl carrier protein of acetyl-Co...	28	5.3
26	CXCR3_RAT (Q9JII9) C-X-C chemokine receptor type 3 (CXC-R3) (CXC...	28	5.3
27	CXCR3_MOUSE (O88410) C-X-C chemokine receptor type 3 (CXC-R3) (C...	28	5.3
28	VINC_CAEEL (P19826) Vinculin (P107B)	28	5.3
29	BMR1B_MOUSE (P36898) Bone morphogenetic protein receptor type IB...	28	5.3
30	RAB5C_BOVIN (Q58DS9) Ras-related protein Rab-5C	28	5.3
31	APP1_SCHPO (Q9P7E8) Protein app1	28	5.3
32	ALGP_PSEAE (P15276) Transcriptional regulatory protein algP (Alg...	28	5.3
33	VMSA_HBVWP (Q02317) Major surface antigen precursor	28	6.9
34	VMSA_HBVW2 (P03141) Major surface antigen precursor	28	6.9
35	VMSA_HBVDR (P03140) Major surface antigen precursor	28	6.9
36	VMSA_HBVD4 (P12934) Major surface antigen precursor	28	6.9
37	POLG_HCVT5 (O92529) Genome polyprotein [Contains: Core protein p...	28	6.9
38	SEM3E_MOUSE (P70275) Semaphorin-3E precursor (Semaphorin H) (Sem...	28	6.9
39	HSLU_LEGPL (Q5WYQ8) ATP-dependent hsl protease ATP-binding subun...	28	6.9
40	HSLU_LEGPH (Q5ZXU0) ATP-dependent hsl protease ATP-binding subun...	28	6.9
41	HSLU_LEGPA (Q5X7B0) ATP-dependent hsl protease ATP-binding subun...	28	6.9
42	VMSA_HBVAW (P03142) Major surface antigen precursor	28	6.9
43	E1BL_ADE02 (P03244) E1B protein, large T-antigen	28	6.9
44	FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes: [A...	28	6.9
45	QUEF_PSEAE (Q9I037) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)	28	6.9
46	CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21	28	6.9
47	SMF_HUMAN (Q12766) SMF protein (Fragment)	28	6.9
48	JHD3C_HUMAN (Q9H3R0) JmjC domain-containing histone demethylatio...	28	6.9
49	MMPL3_MYCLE (O06081) Putative membrane protein mmpL3	27	9.1
50	RS7_PARUW (Q6MER7) 30S ribosomal protein S7	27	9.1
51	ACM4_RAT (P08485) Muscarinic acetylcholine receptor M4	27	9.1
52	VMSA_HBVA4 (Q05496) Major surface antigen precursor	27	9.1
53	VMSA_HBVAY (P03139) Major surface antigen precursor	27	9.1
54	RCOR3_HUMAN (Q9P2K3) REST corepressor 3	27	9.1
55	TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subuni...	27	9.1
56	MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1) ...	27	9.1
57	UNC51_CAEEL (Q23023) Serine/threonine-protein kinase unc-51 (EC ...	27	9.1
58	NEOR_STRCY (P14501) Neomycin resistance protein	27	9.1
59	UPK3B_HUMAN (Q9BT76) Uroplakin-3B precursor (Uroplakin IIIb) (UP...	27	9.1
60	CR026_HUMAN (Q8N1N2) Protein C18orf26	27	9.1
61	TSH1_HUMAN (Q6ZSZ6) Teashirt homolog 1 (Serologically defined co...	27	9.1
62	PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)	27	9.1
63	CANA_DROME (Q11002) Calpain A (EC 3.4.22.-) (Calcium-activated n...	27	9.1

>RLA0_CHERU (P29764) 60S acidic ribosomal protein P0 (Light-induced 34 kDa|
           protein)
          Length = 321

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +2

Query: 98  SHPTCKAQLCTTMQPATATATVV--PVRPSLRAVPRSLASAERLGMGRAATCTTALRAQC 271
           S+PT  A   ++   AT    ++  P   SLR  PR L S  R+    + +C++A  A  
Sbjct: 233 SYPTLAAAPHSSSMGATMFLLLLLQPTMTSLR--PRKLRSISRILAVASCSCSSAGTAPT 290

Query: 272 GLGAGAEPVEARKED 316
           G GA A  VE +KE+
Sbjct: 291 GGGAAAAAVEEKKEE 305

to top

>HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB|
          Length = 511

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 QPATATATVVPVRPSLRAVPRSLASAERLGMGRAATCTTALRAQC----GLGAGAEPVEA 304
           +P T+     P  P+  A   +    E      AA  TTA +A         A A+   A
Sbjct: 100 KPVTSRKATAPAAPAAPATEPAAVEEEAPAKKAAAKKTTAKKATAKKTTAKKAAAKKTTA 159

Query: 305 RKEDGPLPQELVQEEDKVLAPE 370
           +KEDG L ++   EE K    E
Sbjct: 160 KKEDGELLEDEATEEPKAATEE 181

to top

>SUH_MOUSE (P31266) Recombining binding protein suppressor of hairless (J|
           kappa-recombination signal binding protein) (RBP-J
           kappa)
          Length = 526

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 285 PAPRPHC-ARSAVVHVAARPIPSLSAEASERGTARNDGRTGTTVAVAVA 142
           P PRPHC A  A++   +  +PS  +  +  G   N     T+V  + A
Sbjct: 474 PGPRPHCSAAGAILRANSSQVPSNESNTNSEGNYTNASTNSTSVTSSTA 522

to top

>VE2_HPV2A (P25482) Regulatory protein E2|
          Length = 391

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 116 AQLCTTMQPATATATVVPVRPSLRAVPRSLA-SAERLGMGRAATCTTALRAQCGLGAGAE 292
           A + +T   A+    + P+R ++  VP  +A SAE  G GRAA  T AL   C   A   
Sbjct: 200 ASVSSTQASASDDEPLSPIRTAVSPVPAPVAASAESTGAGRAAPPTQAL---CSAQAPTS 256

Query: 293 PVEARK 310
           P   R+
Sbjct: 257 PPAKRQ 262

to top

>K0553_HUMAN (Q9UKJ3) Protein KIAA0553|
          Length = 1089

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 261 ARSAAWVPGRNRWRRARRTDPCLRSWSKRRTRCWRQSNWNCSR 389
           +RS +    R+R R   R+  C RS SKRR+R     +W  SR
Sbjct: 531 SRSRSHTRERSRSRGRSRSSSCSRSRSKRRSRSTTAHSWQRSR 573

to top

>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +3

Query: 189 PSRARSLRRKGLGWAVPRHVPRRSARSAAWVPGRNRWRRARRTDPCLRSWSKRRTRCWRQ 368
           P R  S RR+    +  R    RS+  ++    R  +R  R      RSWS+ R+R  R 
Sbjct: 352 PGRNASTRRRSSSSSASRTSSSRSSSRSSSRSRRGYYRSGRHARSRSRSWSRSRSRSRRY 411

Query: 369 S 371
           S
Sbjct: 412 S 412

to top

>VMSA_HBVWI (P17397) Major surface antigen precursor|
          Length = 388

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q+G    P+ PP R T PQA Q
Sbjct: 83  ASTNRQLGRKPTPLSPPLRDTHPQAMQ 109

to top

>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,|
            muscle-specific form (Alpha-NAC, muscle-specific form)
          Length = 2187

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +2

Query: 5    PPLPRPNRHTGRSKYRSYPTAVT*YRPPS*PSHPTCKAQLCTTMQ-PATATATVVPVRPS 181
            PP+  P+ H   SK      A     P + P  PT   ++ ++ + P T+     P  PS
Sbjct: 1552 PPVKNPSSHKKTSKTIELKEA-----PATLPPSPTKSPKIPSSKKAPRTSAPKEFPASPS 1606

Query: 182  LRAVPRSLASAERLGMGRAATCT 250
            ++ V  SLA      + +A + T
Sbjct: 1607 IKPVTTSLAQTAPPSLQKAPSTT 1629

to top

>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)|
           (EBNA-2) (EBNA2)
          Length = 451

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -1

Query: 260 GAPWYMSRHGPSQAFPPKRASAGRHATMGAQAQPSPSRSRAAWSCK 123
           G PW    +  S + P      G H   GA   P+P  S AA  C+
Sbjct: 332 GGPWRPEPNTSSPSMPELSPVLGLHQGQGAGDSPTPGPSNAAPVCR 377

to top

>PALC_NEUCR (Q7SEM8) pH-response regulator protein palC|
          Length = 490

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +2

Query: 224 GMGRAATCT----TALRAQCGLGAGAEPVEARKEDGPLPQELVQEEDK 355
           G G A  C      ALRAQC L      + A  +D P P  + Q+ +K
Sbjct: 195 GYGMAPPCADISPAALRAQCSLAMAEATLLAVLKDDPYPAVVAQDRNK 242

to top

>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)|
           (EBNA-2)
          Length = 487

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -1

Query: 260 GAPWYMSRHGPSQAFPPKRASAGRHATMGAQAQPSPSRSRAAWSCK 123
           G PW    +  S + P      G H   GA   P+P  S AA  C+
Sbjct: 368 GGPWRPEPNTSSPSMPELSPVLGLHQGQGAGDSPTPGPSNAAPVCR 413

to top

>T22D4_HUMAN (Q9Y3Q8) TSC22 domain family protein 4 (TSC22-related-inducible|
           leucine zipper protein 2) (Tsc-22-like protein THG-1)
          Length = 395

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 309 LRASTGSAPAPRPHCARSAVVHVAARPIPSLSAEASERGT 190
           L AS+     P P    SA    AA P+PSL  EA   G+
Sbjct: 186 LSASSPQQRPPEPETGESAGTSRAATPLPSLRVEAEAGGS 225

to top

>VMSA_HBVYW (P03138) Major surface antigen precursor|
          Length = 388

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q G    P+ PP R+T PQA Q
Sbjct: 83  ASTNRQSGRQPTPLSPPLRNTHPQAMQ 109

to top

>VMSA_HBVIA (P24025) Major surface antigen precursor|
          Length = 388

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q G    P+ PP R+T PQA Q
Sbjct: 83  ASTNRQSGRQPTPLSPPLRNTHPQAMQ 109

to top

>FLVC2_MOUSE (Q91X85) Feline leukemia virus subgroup C receptor-related protein|
           2 (Calcium-chelate transporter) (CCT)
          Length = 551

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 86  PS*PSHPTCKAQLCTTMQPATATATVVPVRPSLRAVPRSLASAERL 223
           PS   HP+       ++ P+ +    V VRPS  A+P +LA    L
Sbjct: 43  PSVSGHPSVSGHPSVSIHPSVSIDPSVSVRPSSSALPSTLAQPSGL 88

to top

>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor|
          Length = 2213

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
 Frame = -1

Query: 266 ARGAPWYMSRHGPSQAFPPKRASAGR---------HATMGAQAQPSPSRSRAAWSCKVEP 114
           ARGA    +  G   A PP+RA  GR           ++  +  P PSR RAA      P
Sbjct: 2   ARGARPSAAGGGGGGAEPPERAGPGRPRGSPPGRARPSLAPRPGPEPSRPRAA------P 55

Query: 113 CTLGG-LASLGACTT*RRLDRIG 48
            T GG  A  G C   RR  ++G
Sbjct: 56  ETPGGDTAGAGRCGG-RRAAKLG 77

to top

>ATI2_HHV11 (P10230) Alpha trans-inducing factor 78 kDa protein|
          Length = 718

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
 Frame = +2

Query: 5   PPLPRPNRHTGRSKYRSYPTAVT*YRPPS*P--SHPTCKAQLCTTMQPATATATVVPVRP 178
           PPLPRP  H+  +  R +         P  P  + P  +     T QPAT    +  V P
Sbjct: 469 PPLPRPRLHSTPASTRRFRRRRADGAGPPLPDANDPVAEPPAAAT-QPATYYTHMGEVPP 527

Query: 179 SLRAVPRSLASAERLGMGRAATCTTALRAQCGLGAGAEPVEARKEDGPLPQ 331
            L A  R++A  +R     AATC   +R +  LG+   P    +  GP P+
Sbjct: 528 RLPA--RNVAGPDR--RPPAATCPLLVR-RASLGSLDRP----RVWGPAPE 569

to top

>VMSA_HBVWO (P17399) Major surface antigen precursor|
          Length = 388

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q G    P+ PP R T PQA Q
Sbjct: 83  ASTNRQSGRQPTPLSPPLRDTHPQAMQ 109

to top

>VMSA_HBVWJ (P17398) Major surface antigen precursor|
          Length = 388

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q G    P+ PP R T PQA Q
Sbjct: 83  ASTNRQSGRQPTPLSPPLRDTHPQAMQ 109

to top

>VMSA_HBVIL (P12911) Major surface antigen precursor|
          Length = 388

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q G    P+ PP R T PQA Q
Sbjct: 83  ASTNRQSGRQPTPLSPPLRDTHPQAMQ 109

to top

>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/58 (29%), Positives = 21/58 (36%)
 Frame = +2

Query: 5   PPLPRPNRHTGRSKYRSYPTAVT*YRPPS*PSHPTCKAQLCTTMQPATATATVVPVRP 178
           PP+ +P  HT   K  +       Y P   P  P+      T   PAT   T  P  P
Sbjct: 174 PPVTKPPTHTPSPKPPTSKPTPPVYTPSPKPPKPSPPTYTPTPKPPATKPPTSTPTHP 231

to top

>SUH_HUMAN (Q06330) Recombining binding protein suppressor of hairless (J|
           kappa-recombination signal-binding protein) (RBP-J
           kappa) (RBP-J) (RBP-JK) (CBF-1) (NY-REN-30 antigen)
          Length = 500

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 285 PAPRPHCA-RSAVVHVAARPIPSLSAEASERGTARNDGRTGTTVAVAVA 142
           P PRPHC+   A++   +  +P   +  +  G+  N     T+V  + A
Sbjct: 448 PGPRPHCSVAGAILPANSSQVPPNESNTNSEGSYTNASTNSTSVTSSTA 496

to top

>YKF4_YEAST (P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4 intergenic|
           region
          Length = 738

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 287 AEPVEARKEDGPLPQELVQEEDKVLAPEQ 373
           AE  E  KE+    +EL QE+D V APE+
Sbjct: 326 AEKKEQVKEEEQTAEELEQEQDNVAAPEE 354

to top

>FBIC_MYCPA (Q73WP9) FO synthase (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase)
          Length = 867

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 137 QPATATATVVPVRPSLRAVPRSLASAERLGMGRA 238
           +P      VVP R S RA P++ ASA R  + RA
Sbjct: 8   EPTALPDPVVPARASSRATPKATASALRRVLRRA 41

to top

>BCCP_SOYBN (Q42783) Biotin carboxyl carrier protein of acetyl-CoA carboxylase,|
           chloroplast precursor (BCCP)
          Length = 262

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = +2

Query: 122 LCTTMQPATATATVVPVRPSLRAVPR--SLASAERLGMGRAATCTTALRAQCGL----GA 283
           + +++ PAT  AT + +  SLR  P+  +L  A + G     T   A   +  L     A
Sbjct: 1   MASSLAPATKAATNLRLTHSLRFSPKPNNLRFATKPGNTLLCTRVKAQLNEVALDSSSNA 60

Query: 284 GAEPVEARKEDGPLPQELVQEEDKVLAPEQ 373
            + P++A+ ++ P  + L +    VLA ++
Sbjct: 61  TSPPMKAKSKEEPPAKPLAEPSSSVLATQE 90

to top

>CXCR3_RAT (Q9JII9) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)|
           (Interferon-inducible protein 10 receptor) (IP-10
           receptor)
          Length = 367

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 194 GRHATMGAQAQPSPSRSRAAWSCKVEPCTLG 102
           GR    G Q QPS SR  ++WS   E   LG
Sbjct: 336 GRSDQRGPQRQPSSSRRESSWSETTEASYLG 366

to top

>CXCR3_MOUSE (O88410) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)|
           (Interferon-inducible protein 10 receptor) (IP-10
           receptor)
          Length = 367

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 194 GRHATMGAQAQPSPSRSRAAWSCKVEPCTLG 102
           GR    G Q QPS SR  ++WS   E   LG
Sbjct: 336 GRSDQRGPQRQPSSSRRESSWSETTEASYLG 366

to top

>VINC_CAEEL (P19826) Vinculin (P107B)|
          Length = 1010

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = +2

Query: 116  AQLCTTMQPATATATVVPVRPSLRAVPRSLASAERLGMGRAATCTTALRAQCGLGAGAEP 295
            A+LCT ++  TA   V    P++    + L++ +   +G A            +G   +P
Sbjct: 903  ARLCTDIKMRTALLQVSERIPTIATQLKVLSTVKATMLGSANV----------IGPYGQP 952

Query: 296  VEARKEDGPLPQELVQEEDKVL 361
            VE  +ED    Q+LV     ++
Sbjct: 953  VEGSEEDDEAMQQLVHNAQNLM 974

to top

>BMR1B_MOUSE (P36898) Bone morphogenetic protein receptor type IB precursor (EC|
           2.7.11.30) (Serine/threonine-protein kinase receptor R6)
           (SKR6) (Activin receptor-like kinase 6) (ALK-6)
          Length = 502

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 291 NRWRRARRTDPCLRSWSKRRTRCWRQS 371
           NRW     +D CLR   K  T CW Q+
Sbjct: 455 NRWS----SDECLRQMGKLMTECWAQN 477

to top

>RAB5C_BOVIN (Q58DS9) Ras-related protein Rab-5C|
          Length = 216

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 231 AVPRHVPRRSARSAAWVPGRNRWRRARRTDPCLRS 335
           A+ + +P+   ++AA  PGRNR    +  +P  RS
Sbjct: 177 AIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRS 211

to top

>APP1_SCHPO (Q9P7E8) Protein app1|
          Length = 857

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 2   TPPLPRPNRHTGRSKYRSYPTAVT*YRPPS*PSHPTCKAQLCTTMQPATATATVVPVRPS 181
           TP +P+P            P A + ++PP+ P  P   +       P    A  VP RP+
Sbjct: 511 TPSVPQPPAAP------VVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPA 564

Query: 182 LRAVPRSLA 208
           +  VP +L+
Sbjct: 565 VPVVPEALS 573

to top

>ALGP_PSEAE (P15276) Transcriptional regulatory protein algP (Alginate|
           regulatory protein algR3)
          Length = 352

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = +2

Query: 8   PLPRPNRHTGRSKYRSYPTAVT*YRPPS*PSHPTCKAQLCTTMQPATATATVVPVRPSLR 187
           P  +P   +  +K  + P A    +P + P+     A+   T +PATA A      PS  
Sbjct: 270 PAAKPVAKSAAAKPAAKPAAKPAAKPAAKPAAKPVAAKPAAT-KPATAPAAKPAATPSAP 328

Query: 188 AVPRSLASAERLGMGRAATCTTA 256
           A   S ASA        A  T+A
Sbjct: 329 AAASSAASATPAAGSNGAAPTSA 351

to top

>VMSA_HBVWP (Q02317) Major surface antigen precursor|
          Length = 399

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q G    PI PP R + PQA Q
Sbjct: 94  ASTNRQSGRQPTPISPPLRDSHPQAMQ 120

to top

>VMSA_HBVW2 (P03141) Major surface antigen precursor|
          Length = 399

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q G    PI PP R + PQA Q
Sbjct: 94  ASTNRQSGRQPTPISPPLRDSHPQAMQ 120

to top

>VMSA_HBVDR (P03140) Major surface antigen precursor|
          Length = 399

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q G    PI PP R + PQA Q
Sbjct: 94  ASTNRQSGRQPTPISPPLRDSHPQAMQ 120

to top

>VMSA_HBVD4 (P12934) Major surface antigen precursor|
          Length = 399

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q G    PI PP R + PQA Q
Sbjct: 94  ASTNRQSGRQPTPISPPLRDSHPQAMQ 120

to top

>POLG_HCVT5 (O92529) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3018

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 157  DGCACAPIVACRPALARFGGKAWDGPCRDMYHG 255
            D  AC  I+   P  AR G     GP  DM HG
Sbjct: 993  DTAACGDILRGLPVSARLGDLVLLGPADDMRHG 1025

to top

>SEM3E_MOUSE (P70275) Semaphorin-3E precursor (Semaphorin H) (Sema H)|
          Length = 775

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 273 PHCARSAVVHVAARPIPSLSAEASERGTAR 184
           PHCA   V H +  P+  L +  SERG  R
Sbjct: 140 PHCAFIRVGHHSEEPLFHLESHRSERGRGR 169

to top

>HSLU_LEGPL (Q5WYQ8) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 441

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 261 ARSAAWVPGRNRWRRARRTDPCLRS 335
           A+ A  +  RNRWRR +  DP LR+
Sbjct: 22  AKRAVAIALRNRWRRMKIKDPVLRN 46

to top

>HSLU_LEGPH (Q5ZXU0) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 441

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 261 ARSAAWVPGRNRWRRARRTDPCLRS 335
           A+ A  +  RNRWRR +  DP LR+
Sbjct: 22  AKRAVAIALRNRWRRMKIKDPVLRN 46

to top

>HSLU_LEGPA (Q5X7B0) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 441

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 261 ARSAAWVPGRNRWRRARRTDPCLRS 335
           A+ A  +  RNRWRR +  DP LR+
Sbjct: 22  AKRAVAIALRNRWRRMKIKDPVLRN 46

to top

>VMSA_HBVAW (P03142) Major surface antigen precursor|
          Length = 388

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ Q G    PI PP R + PQA Q
Sbjct: 83  ASTNRQSGRQPTPISPPLRDSHPQAMQ 109

to top

>E1BL_ADE02 (P03244) E1B protein, large T-antigen|
          Length = 495

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
 Frame = +2

Query: 176 PSLRAVPRSL---ASAERLGMGRAATCTTALR--------------AQCGLGAGAEPVEA 304
           PS R VP      AS E  G  + +  T   R              +Q    AGAEP+E 
Sbjct: 6   PSERGVPAGFSGHASVESGGETQESPATVVFRPPGNNTDGGATAGGSQAAAAAGAEPMEP 65

Query: 305 RKEDGPLPQELVQEEDKVLAPEQLELL 385
               GP    +VQ  +  L PE   +L
Sbjct: 66  ESRPGPSGMNVVQVAE--LFPELRRIL 90

to top

>FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes:|
           [Acyl-carrier-protein] S-acetyltransferase (EC
           2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase
           (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase
           (EC 2.3.1.41); 3-oxoacyl-[acyl-ca
          Length = 2505

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 309 LRASTGSAPAPRPHCARSAVVHVAARPIPSL 217
           L+ +T  APAP PH A   ++H + R + ++
Sbjct: 404 LQPNTQQAPAPAPHAALPHLLHASGRTMEAV 434

to top

>QUEF_PSEAE (Q9I037) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 276

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 248 YMSRHGPSQAFPPKRASAGRHATMGAQAQPSPSRSRAAWSC 126
           Y+S + PS  FP  R +  + A +G  A+  P R    W+C
Sbjct: 16  YVSSYTPSLLFPISRTA--KWAELGLSAETLPYRGVDIWNC 54

to top

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/73 (27%), Positives = 26/73 (35%)
 Frame = +3

Query: 69  SRSTGPQASQATQRARLNFAXXXXXXXXXXXXXXXAHRCVPSRARSLRRKGLGWAVPRHV 248
           SRS     S++  R+R   +                 RC  SR+RS          P H 
Sbjct: 277 SRSRSRSRSRSRSRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRS----------PAHR 326

Query: 249 PRRSARSAAWVPG 287
           PRR + S    PG
Sbjct: 327 PRRHSSSRVNPPG 339

to top

>SMF_HUMAN (Q12766) SMF protein (Fragment)|
          Length = 1435

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -1

Query: 266 ARGAPWYMSRHGPSQAFPPKRASAGRHATMG----AQAQPSPSRSRAAWSCKVEPCTL 105
           ARG P  ++   P +A  P   + GR ++MG     QA     ++ +  +C ++P TL
Sbjct: 647 ARGKPSLLAAARPMRAILPAPVNVGRGSSMGLPRARQAFSLSDKTPSVRTCGLKPSTL 704

to top

>JHD3C_HUMAN (Q9H3R0) JmjC domain-containing histone demethylation protein 3C|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2C)
           (Gene amplified in squamous cell carcinoma 1 protein)
           (GASC-1 protein)
          Length = 1056

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 249 PRRSARSAAWVPGRNRWRRARRTDPCLRSWSKR 347
           P  +    AW+  R + R+A R+  C RS SKR
Sbjct: 350 PASTPEVKAWLQRRRKVRKASRSFQCARSTSKR 382

to top

>MMPL3_MYCLE (O06081) Putative membrane protein mmpL3|
          Length = 955

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 286 PGTQAALRAERRGTCRGTAHPKPFRRSERARDG 188
           P T A+L A      RG  HP     S+RAR G
Sbjct: 773 PVTAASLAAPASRVPRGPTHPATLEPSQRARSG 805

to top

>RS7_PARUW (Q6MER7) 30S ribosomal protein S7|
          Length = 157

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 201 RSLRRKGLGWAVPRHVP--RRSARSAAWVPGRNRWRRARRTDPCLRS 335
           +S R  G  + VP  +P  RRS+ +  W+ G +R +  R  +  L S
Sbjct: 77  KSRRIGGATYQVPIEIPANRRSSMAMRWIIGHSRGKAGRSMEDALAS 123

to top

>ACM4_RAT (P08485) Muscarinic acetylcholine receptor M4|
          Length = 478

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
 Frame = +2

Query: 5   PPLPRPNRHTGRSKYRSYPTAVT*YRPPS*PSHPTCKAQLCTTMQPATATATVVPVRPSL 184
           PP P P++ T         T  T  RPP             T +  A AT   +P  P+L
Sbjct: 282 PPRPVPDKDTSNESSSGSATQNTKERPP-------------TELSTAEATTPALPA-PTL 327

Query: 185 RAVPRSLASAERLGMGRAAT------CTTALRAQCGLGAGAEP 295
           +  PR+L  A +    +  T      C TA+       AG  P
Sbjct: 328 Q--PRTLNPASKWSKIQIVTKQTGNECVTAIEIVPATPAGMRP 368

to top

>VMSA_HBVA4 (Q05496) Major surface antigen precursor|
          Length = 399

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQASQ 98
           A T+ + G    P+ PP R T PQA Q
Sbjct: 94  ASTNRRSGRKPTPVSPPLRDTHPQAMQ 120

to top

>VMSA_HBVAY (P03139) Major surface antigen precursor|
          Length = 388

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 18  AQTDTQVGVSTDPIQPPSRSTGPQA 92
           A T+ Q G    P+ PP R+T PQA
Sbjct: 83  ASTNRQSGRQPTPLSPPLRTTHPQA 107

to top

>RCOR3_HUMAN (Q9P2K3) REST corepressor 3|
          Length = 495

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 83  PPS*PSHPTCKAQLCTTMQPATATATVVPVRPSLRAVPRSLASAER 220
           PP+  S PT  A + T  QP       +P  P+L   P  L    R
Sbjct: 395 PPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQAR 440

to top

>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 801

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 303 ASTGSAPAPRPHCARSAVVHVAARPIPSLSAEA 205
           A+ G    P+P  A SA     A P+P+  AEA
Sbjct: 57  AAGGDGGTPKPGVAVSAAAPAGAAPVPAAPAEA 89

to top

>MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1)|
           (Preprospasmolysin)
          Length = 400

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = +2

Query: 2   TPPLPRPNRHTGRSKYRSYPTAVT*YRPPS*PSHPTCKAQLCTTMQPATATATVVPVRPS 181
           T P P     +  ++  + PT       P+ P   T      TT  P T   T VP  P 
Sbjct: 118 TTPAPDTTTASTTAETTTVPTTPETTTVPTTPETTTVPTTPETTTVPTTPETTTVPTTPE 177

Query: 182 LRAVP 196
              VP
Sbjct: 178 TTTVP 182

to top

>UNC51_CAEEL (Q23023) Serine/threonine-protein kinase unc-51 (EC 2.7.11.1)|
           (Uncoordinated protein 51)
          Length = 856

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 24/100 (24%), Positives = 42/100 (42%)
 Frame = +2

Query: 77  YRPPS*PSHPTCKAQLCTTMQPATATATVVPVRPSLRAVPRSLASAERLGMGRAATCTTA 256
           + PP   S P  + Q+ T + P+  T   VPV PS R   + +   ERL   R     ++
Sbjct: 360 FLPPRQESSPVKQVQVHTNVSPSLTTCKPVPV-PSQRLTYQKM--EERLAAARKTAVPSS 416

Query: 257 LRAQCGLGAGAEPVEARKEDGPLPQELVQEEDKVLAPEQL 376
                   +     + +++  P    +VQ   ++  P+QL
Sbjct: 417 SSPTGSAVSAQHQHQHQQQQEPASSPVVQ---RIERPDQL 453

to top

>NEOR_STRCY (P14501) Neomycin resistance protein|
          Length = 437

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 298 HRFRPGTQAALRAERRGTCRGTAH--PKPFRRSERARDGTQRW 176
           HR  P    A   +RR   RG  H  P P RR  R RDG Q W
Sbjct: 310 HRVDPLPAPAPGPDRRRH-RGRRHGRPVPDRRRRRFRDGVQIW 351

to top

>UPK3B_HUMAN (Q9BT76) Uroplakin-3B precursor (Uroplakin IIIb) (UPIIIb) (p35)|
          Length = 320

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 236 HGPSQAFPPKRASAGRHATMGAQAQPSP 153
           HG +   PP     GRH   G QA P P
Sbjct: 271 HGQALHDPPHPTQRGRHTAGGLQAWPGP 298

to top

>CR026_HUMAN (Q8N1N2) Protein C18orf26|
          Length = 210

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 125 CTTMQPATATATVVPVRPSLRAVPRSLASAERLGMGRAATCTT 253
           C T++P T +    P   +   VP S A+        AAT +T
Sbjct: 157 CVTVKPGTPSPACPPTMTTTSTVPASTATESTTSTATAATTST 199

to top

>TSH1_HUMAN (Q6ZSZ6) Teashirt homolog 1 (Serologically defined colon cancer|
           antigen 3) (Antigen NY-CO-33)
          Length = 1077

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
 Frame = +2

Query: 86  PS*PSHPTCKA--QLCTTMQPATATATVVPVRPSLRAVPRSLASAERLGMGRAATCTTAL 259
           PS   +P+  A  QL  T++P  A    V V+PS     +SL+SAE   +  +    T  
Sbjct: 571 PSWGGYPSIHAAYQLPGTVKPLPAAVQSVQVQPSYAGGVKSLSSAEHNALLHSPGSLTPP 630

Query: 260 RAQCGLGAGAEPVE-------ARKEDGPLPQE 334
             +  + A  E VE        +KE+ P  +E
Sbjct: 631 PHKSNVSAMEELVEKVTGKVNIKKEERPPEKE 662

to top

>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 215  ERLGMGRAATCTTALRAQCGLGAGAEPVEARKEDGPLPQE--LVQEEDKVLAPEQLELLE 388
            E L M +     T  + Q       +   A +E  PLP+E  L+ EE+K+ + E+  LLE
Sbjct: 1117 ETLSMEKIPPMVTTDQKQEESKLEKDKASALQEKKPLPEEKKLIPEEEKIRSEEKKPLLE 1176

to top

>CANA_DROME (Q11002) Calpain A (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase A) (CANP A) [Contains: Calpain A catalytic
           subunit]
          Length = 828

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 251 WYMSRHGPSQAFPPKRASAGRHATMGAQAQPSPSRSRA 138
           WY  +  P   F   + +A R++ MG   +P P+ + A
Sbjct: 252 WYDLKEAPGNLFTILQKAAERNSMMGCSIEPDPNVTEA 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,754,446
Number of Sequences: 219361
Number of extensions: 1155387
Number of successful extensions: 5174
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 4835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5167
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result