ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast71g11 |
|---|---|
| Clone Library Name | barley_pub |
>PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) (rCALM) Length = 640 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 106 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 219 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia) (CALM) Length = 660 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 106 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 219 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) Length = 652 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 106 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 219 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52| Length = 435 Score = 29.3 bits (64), Expect = 2.3 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = +2 Query: 8 TLRTRSPLAPSSRIPFPSSVHRHPLLFDFI*FPHLHFPSPPAGI*SKQAPILPASQR 178 TL R L+ +P +S + P + + P LHFP P A P +PAS+R Sbjct: 368 TLAARPALSAPQNLPTNTSSIQRPTMIEL---PKLHFPQPTA----VPLPNVPASRR 417
>FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 386 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -3 Query: 174 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 70 WL G+ C Q PAG DGK G++++ K WR Sbjct: 11 WLMGRRPRCSCQAPAGFDGKDGRGSRVR-EKPPWR 44
>FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 385 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -3 Query: 174 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 70 WLAG+ C Q PAG GK R ++++ K WR Sbjct: 11 WLAGRRPRCSCQSPAGFSGKDRRSSRVR-EKPPWR 44
>MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 106 ASPLSISAGRDLKQASSDLASQP 174 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 106 ASPLSISAGRDLKQASSDLASQP 174 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 106 ASPLSISAGRDLKQASSDLASQP 174 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>BXA1_SAMCY (P33718) Bombyxin A-1 homolog precursor [Contains: Bombyxin A-1| homolog B chain; Bombyxin A-1 homolog A chain] Length = 99 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 78 GWRWTEDGKGIRLDGASGDR 19 GWRW E + +LDGA G R Sbjct: 59 GWRWLEPQRARQLDGARGKR 78
>HTPG_NITWN (Q3SNS6) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 637 Score = 25.0 bits (53), Expect(2) = 4.0 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = -3 Query: 84 KRGWRWTEDGKG 49 + WRW+ DGKG Sbjct: 155 REAWRWSSDGKG 166 Score = 21.9 bits (45), Expect(2) = 4.0 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -1 Query: 233 EKRPRSVTSLGLS---DEEDMAAGWLARSELACFRSRPAEMESGD 108 E+R +V G+ DE A G +ARS F + ESGD Sbjct: 79 ERRQLAVEDNGIGMGRDELVDALGTIARSGTKAFIEQAEAAESGD 123
>EVC_HUMAN (P57679) Ellis-van Creveld syndrome protein (DWF-1)| Length = 992 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -1 Query: 224 PRSVTSLGLSDEEDMAAGWLARSELACFRSRPAEMESGDAG 102 P+ LG+ + ED+A+G L+ R E E+GD+G Sbjct: 940 PQERGDLGVPNNEDLASGDQTSGSLSSKRLSQQESEAGDSG 980
>RGS20_BOVIN (P79348) Regulator of G-protein signaling 20 (RGS20)| (Retina-specific regulator of G-protein signaling) (RET-RGS1) Length = 374 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 15 ARDLHSLRPAGSPSHPQSIAIPSCLISFDSRISTFHLRRPGSEA 146 A +H+++ GSP+ P +++ S +S +R LRRP EA Sbjct: 48 ATAMHNVKLLGSPAAPTLLSLLSGTLSGFARFFALLLRRPPPEA 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,489,521 Number of Sequences: 219361 Number of extensions: 704175 Number of successful extensions: 2646 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2575 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2643 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
