ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast71g09 |
|---|---|
| Clone Library Name | barley_pub |
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 87.4 bits (215), Expect = 7e-18 Identities = 44/79 (55%), Positives = 59/79 (74%), Gaps = 1/79 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDA 221 TL++GNLSFN + D + + FA+ GEVV VR+ TH E PKGFG+V+F++ EDA+KALDA Sbjct: 268 TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA 327 Query: 222 LNGGDLIGRPVRLDLAAER 278 L G + RPVRLD ++ R Sbjct: 328 LQGEYIDNRPVRLDFSSPR 346 Score = 52.4 bits (124), Expect = 3e-07 Identities = 26/82 (31%), Positives = 52/82 (63%), Gaps = 2/82 (2%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDG--HPKGFGHVEFASAEDAQKALD 218 T+++G LS++I+ + +K+ F IG V+ R+ +E G +G+G+V+F + A+KA+ Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVI-YERGTDRSRGYGYVDFENKSYAEKAIQ 227 Query: 219 ALNGGDLIGRPVRLDLAAERGA 284 + G ++ GRP+ D++ + A Sbjct: 228 EMQGKEIDGRPINCDMSTSKPA 249
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 64.3 bits (155), Expect = 7e-11 Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFAS 191 S G +G + L++GNLS+ ++ ++ F + G+VV+ R+ D G KGFG V +S Sbjct: 249 SGSGSGSGNR-LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 307 Query: 192 AEDAQKALDALNGGDLIGRPVRLDLAAER 278 +++ QKA+++LNG DL GR +R+ A R Sbjct: 308 SQEVQKAINSLNGADLDGRQIRVSEAEAR 336 Score = 50.1 bits (118), Expect = 1e-06 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++GNLSFN++ Q+ Q F G V V + + G +GFG V ++A + + A Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 225 NGGDLIGRPVRLD 263 NG + GRP+R++ Sbjct: 161 NGYEFEGRPLRVN 173
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 63.9 bits (154), Expect = 9e-11 Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 1/78 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKALDAL 224 +++GNLS+ ++ +K+ F++ G VVD ++ D G +GFG V ++SA++ A+D+L Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269 Query: 225 NGGDLIGRPVRLDLAAER 278 NG DL GR +R+ A ER Sbjct: 270 NGIDLDGRSIRVSAAEER 287 Score = 40.0 bits (92), Expect = 0.001 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++GNL F+++ + F + G V V + + G +GFG V ++ E+ + A Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 225 NGGDLIGRPVRLD 263 NG ++ GR +R++ Sbjct: 150 NGYEIDGRAIRVN 162
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 63.2 bits (152), Expect = 1e-10 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAE 197 KG A G L++G+L FNI D ++ F G + ++L E G KG+G + F+ +E Sbjct: 244 KGSA-GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAER 278 A+KAL+ LNG +L GRP+++ ER Sbjct: 303 CAKKALEQLNGFELAGRPMKVGHVTER 329 Score = 35.0 bits (79), Expect = 0.043 Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDG-HPKGFGHVEFASAEDAQKALD 218 +T++ L+ I +++FF+ +G+V DVR+ + + +G +VEF + A+ Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI- 211 Query: 219 ALNGGDLIGRPVRLDLA-AERGASA 290 L G ++G P+ + + AE+ +A Sbjct: 212 GLTGQRVLGVPIIVQASQAEKNRAA 236
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 63.2 bits (152), Expect = 1e-10 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAE 197 KG A G L++G+L FNI D ++ F G + ++L E G KG+G + F+ +E Sbjct: 244 KGSA-GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAER 278 A+KAL+ LNG +L GRP+++ ER Sbjct: 303 CAKKALEQLNGFELAGRPMKVGHVTER 329 Score = 35.4 bits (80), Expect = 0.033 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDG-HPKGFGHVEFASAEDAQKALD 218 +T++ L+ I +++FF+ +G+V DVR+ + + KG +VEF A+ Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI- 211 Query: 219 ALNGGDLIGRPVRLDLA-AERGASA 290 L G ++G P+ + + AE+ +A Sbjct: 212 GLTGQRVLGVPIIVQASQAEKNRAA 236
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 63.2 bits (152), Expect = 1e-10 Identities = 30/78 (38%), Positives = 52/78 (66%), Gaps = 1/78 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKALDAL 224 +++GNLS+ ++ +K+ F++ G VVD ++ D G +GFG V ++S+++ A+D+L Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268 Query: 225 NGGDLIGRPVRLDLAAER 278 NG DL GR +R+ A ER Sbjct: 269 NGVDLDGRSIRVSAAEER 286 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++GNL F+++ + F + G V V + + G +GFG V ++ E+ + A Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 225 NGGDLIGRPVRLD 263 NG ++ GR +R++ Sbjct: 149 NGYEIDGRAIRVN 161
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 62.0 bits (149), Expect = 3e-10 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N +++ +++K F + G + V++ T E G KGFG V F EDAQKA+D +N Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G +L G+ + R ER RT + ++VK D ++ +R Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311 Score = 45.1 bits (105), Expect = 4e-05 Identities = 24/77 (31%), Positives = 45/77 (58%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ +++++ F+ G + ++ E G KGFG V F+S E+A KA+ +N Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVATKPLYVALAQRK 371 Score = 37.7 bits (86), Expect = 0.007 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I + + G ++ + E+G KG+G V F + E A++A Sbjct: 96 SGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERA 154 Query: 213 LDALNGGDLIGRPV-------RLDLAAERGASA 290 + +NG L GR V R + AE GA A Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARA 187 Score = 36.6 bits (83), Expect = 0.015 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKAL 215 T +L++G+L ++ + + F+ G ++ +R+ + +V F +DA+ AL Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHAL 69 Query: 216 DALNGGDLIGRPVRL 260 D +N + G+PVR+ Sbjct: 70 DTMNFDVIKGKPVRI 84
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 62.0 bits (149), Expect = 3e-10 Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAED 200 G + +++GNL++ ++ D ++ F++ G+VVD ++ D G +GFG V ++SAE+ Sbjct: 182 GSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 241 Query: 201 AQKALDALNGGDLIGRPVRLDLAAER 278 A+++L+G DL GR +R+ A R Sbjct: 242 VNNAIESLDGVDLNGRAIRVSPAEAR 267 Score = 40.8 bits (94), Expect = 8e-04 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 +++GNL F+ + + + F + G V V + + G +GFG V +S E+ + A Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 225 NGGDLIGRPVRLD 263 NG +L GR +R++ Sbjct: 149 NGYELDGRALRVN 161
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 62.0 bits (149), Expect = 3e-10 Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAED 200 G + +++GNL++ ++ D ++ F++ G+VVD ++ D G +GFG V ++SAE+ Sbjct: 188 GSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 247 Query: 201 AQKALDALNGGDLIGRPVRLDLAAER 278 A+++L+G DL GR +R+ A R Sbjct: 248 VNNAIESLDGVDLNGRAIRVSPAEAR 273 Score = 40.4 bits (93), Expect = 0.001 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 +++GNL F+ + + + F + G V V + + G +GFG V +S E+ + A Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 225 NGGDLIGRPVRLD 263 NG +L GR +R++ Sbjct: 149 NGYELDGRALRVN 161
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 61.6 bits (148), Expect = 4e-10 Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKA 212 G L++G+L FNI D ++ F G++ ++ L D G KG+G + F+ +E A++A Sbjct: 261 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 320 Query: 213 LDALNGGDLIGRPVRLDLAAER 278 L+ LNG +L GRP+R+ ER Sbjct: 321 LEQLNGFELAGRPMRVGHVTER 342 Score = 35.8 bits (81), Expect = 0.025 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDG-HPKGFGHVEFASAEDAQKALD 218 +T++ L+ I ++ FF+ +G+V DVR+ + + KG +VEF + A+ Sbjct: 166 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI- 224 Query: 219 ALNGGDLIGRPV 254 L G L+G P+ Sbjct: 225 GLTGQRLLGVPI 236
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 60.5 bits (145), Expect = 1e-09 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N +++ +++K++F Q G + V++ T + G +GFG V F EDAQKA+D +N Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G DL G+ + R ER R + ++VK D ++ +R Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Score = 44.7 bits (104), Expect = 5e-05 Identities = 24/77 (31%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ +++++ F G + ++ E G KGFG V F+S E+A KA+ +N Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVATKPLYVALAQRK 371 Score = 42.4 bits (98), Expect = 3e-04 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ E+G KG+G V F + E A++A Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERA 154 Query: 213 LDALNGGDLIGRPV-------RLDLAAERGASA 290 +D +NG L R V R + AE GA A Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187 Score = 37.0 bits (84), Expect = 0.011 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + + F+ G ++ +R+ G+ +V F DA++ALD Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 222 LNGGDLIGRPVRL 260 +N + G+PVR+ Sbjct: 72 MNFDVIKGKPVRI 84
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 60.5 bits (145), Expect = 1e-09 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N +++ +++K+ F + G + V++ T E G KGFG V F EDAQKA+D +N Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G +L G+ + R ER R + ++VK D ++ +R Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Score = 44.7 bits (104), Expect = 5e-05 Identities = 24/77 (31%), Positives = 45/77 (58%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ +++++ F+ G + ++ E G KGFG V F+S E+A KA+ +N Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVATKPLYVALAQRK 371 Score = 40.8 bits (94), Expect = 8e-04 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ E+G KG+G V F + E A++A Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERA 154 Query: 213 LDALNGGDLIGRPV-------RLDLAAERGASA 290 ++ +NG L R V R + AE GA A Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187 Score = 37.0 bits (84), Expect = 0.011 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + + F+ G ++ +R+ G+ +V F DA++ALD Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 222 LNGGDLIGRPVRL 260 +N + G+PVR+ Sbjct: 72 MNFDVIKGKPVRI 84
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 60.5 bits (145), Expect = 1e-09 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N +++ +++K+ F + G + V++ T E G KGFG V F EDAQKA+D +N Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G +L G+ + R ER R + ++VK D ++ +R Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Score = 44.7 bits (104), Expect = 5e-05 Identities = 24/77 (31%), Positives = 45/77 (58%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ +++++ F+ G + ++ E G KGFG V F+S E+A KA+ +N Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVATKPLYVALAQRK 371 Score = 39.3 bits (90), Expect = 0.002 Identities = 21/74 (28%), Positives = 41/74 (55%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ E+G KG+G V F + E A++A Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERA 154 Query: 213 LDALNGGDLIGRPV 254 ++ +NG L R V Sbjct: 155 IEKMNGMLLNDRKV 168 Score = 37.0 bits (84), Expect = 0.011 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + + F+ G ++ +R+ G+ +V F DA++ALD Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 222 LNGGDLIGRPVRL 260 +N + G+PVR+ Sbjct: 72 MNFDVIKGKPVRI 84
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 60.5 bits (145), Expect = 1e-09 Identities = 35/99 (35%), Positives = 53/99 (53%) Frame = +3 Query: 3 KTPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVE 182 K + + +TL NLSFNI D++K+ F + V++RL + +DG KG ++E Sbjct: 383 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE---DAVEIRLVS-QDGRSKGIAYIE 438 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRT 299 F S DA+K L+ G ++ GR V L E+G RT Sbjct: 439 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERT 477 Score = 57.4 bits (137), Expect = 8e-09 Identities = 33/119 (27%), Positives = 63/119 (52%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +KTL + NLS++ + +++ F + +++ + G KG+ +EFAS EDA++AL+ Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALN 543 Query: 219 ALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 + N ++ GR +RL+L RG+ R++ +FVKG E+ ++ Sbjct: 544 SCNKMEIEGRTIRLELQGPRGSPNARSQP-----------SKTLFVKGLSEDTTEETLK 591 Score = 49.3 bits (116), Expect = 2e-06 Identities = 31/89 (34%), Positives = 48/89 (53%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASA 194 S ++ +KTL++ LS + + +K+ F G V + E G KGFG V+F S Sbjct: 565 SPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSE 622 Query: 195 EDAQKALDALNGGDLIGRPVRLDLAAERG 281 EDA+ A +A+ G++ G V LD A +G Sbjct: 623 EDAKAAKEAMEDGEIDGNKVTLDWAKPKG 651 Score = 42.0 bits (97), Expect = 4e-04 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 5/103 (4%) Frame = +3 Query: 3 KTPASNKGQATGTK-----TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKG 167 + P + K + G++ L++GNL+ N ++K +++ D+ G + Sbjct: 292 EAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTNRK 351 Query: 168 FGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALR 296 FG+V+F SAED +KAL+ L G + G ++L+ R + +R Sbjct: 352 FGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVR 393
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 60.5 bits (145), Expect = 1e-09 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDA 221 T+++GNLSFN D + F G++ +RL T + G KGFG+V F+ + A+K ++ Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE- 425 Query: 222 LNGGDLIGRPVRLDLAAERGASALR 296 +NG + GRP RLD + R R Sbjct: 426 MNGHFIAGRPCRLDFSTPRTGGGSR 450 Score = 51.2 bits (121), Expect = 6e-07 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKAL 215 T T+++G LS+N++ + Q F + G +V R+ + G KG+G+V+F + E A+ A+ Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321 Query: 216 DALNGGDLIGRPVRLDLAAERGAS 287 A ++ GR V LDL+ R A+ Sbjct: 322 AANGTKEIDGRMVNLDLSNPRPAN 345
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 59.7 bits (143), Expect = 2e-09 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N +++ +++K F + G + V++ T E G KGFG V F EDAQKA+D +N Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G +L G+ + R ER R + ++VK D ++ +R Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Score = 44.7 bits (104), Expect = 5e-05 Identities = 24/77 (31%), Positives = 45/77 (58%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ +++++ F+ G + ++ E G KGFG V F+S E+A KA+ +N Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVATKPLYVALAQRK 371 Score = 40.8 bits (94), Expect = 8e-04 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ E+G KG+G V F + E A++A Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERA 154 Query: 213 LDALNGGDLIGRPV-------RLDLAAERGASA 290 ++ +NG L R V R + AE GA A Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187 Score = 37.0 bits (84), Expect = 0.011 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + + F+ G ++ +R+ G+ +V F DA++ALD Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 222 LNGGDLIGRPVRL 260 +N + G+PVR+ Sbjct: 72 MNFDVIKGKPVRI 84
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 59.7 bits (143), Expect = 2e-09 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N +++ +++K F + G + V++ T E G KGFG V F EDAQKA+D +N Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G +L G+ + R ER R + ++VK D ++ +R Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Score = 44.7 bits (104), Expect = 5e-05 Identities = 24/77 (31%), Positives = 45/77 (58%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ +++++ F+ G + ++ E G KGFG V F+S E+A KA+ +N Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVATKPLYVALAQRK 371 Score = 40.8 bits (94), Expect = 8e-04 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ E+G KG+G V F + E A++A Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERA 154 Query: 213 LDALNGGDLIGRPV-------RLDLAAERGASA 290 ++ +NG L R V R + AE GA A Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187 Score = 37.0 bits (84), Expect = 0.011 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + + F+ G ++ +R+ G+ +V F DA++ALD Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 222 LNGGDLIGRPVRL 260 +N + G+PVR+ Sbjct: 72 MNFDVIKGKPVRI 84
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 59.7 bits (143), Expect = 2e-09 Identities = 33/119 (27%), Positives = 65/119 (54%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +KTL + NLS++ + +++ F + +++ +++G KG+ +EFAS EDA++AL+ Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 541 Query: 219 ALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 + N ++ GR +RL+L RG+ R++ +FVKG E+ ++ Sbjct: 542 SCNKREIEGRAIRLELQGPRGSPNARSQP-----------SKTLFVKGLSEDTTEETLK 589 Score = 48.9 bits (115), Expect = 3e-06 Identities = 31/89 (34%), Positives = 48/89 (53%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASA 194 S ++ +KTL++ LS + + +K+ F G V + E G KGFG V+F S Sbjct: 563 SPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSE 620 Query: 195 EDAQKALDALNGGDLIGRPVRLDLAAERG 281 EDA+ A +A+ G++ G V LD A +G Sbjct: 621 EDAKAAKEAMEDGEIDGNKVTLDWAKPKG 649 Score = 47.8 bits (112), Expect = 6e-06 Identities = 25/80 (31%), Positives = 43/80 (53%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 +TL NL + + D++K+ F E+ RL + +DG KG ++EF + DA+K + Sbjct: 393 RTLLAKNLPYKVTQDELKEVFEDAAEI---RLVS-KDGKSKGIAYIEFKTEADAEKTFEE 448 Query: 222 LNGGDLIGRPVRLDLAAERG 281 G ++ GR + L E+G Sbjct: 449 KQGTEIDGRSISLYYTGEKG 468 Score = 47.0 bits (110), Expect = 1e-05 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 5/104 (4%) Frame = +3 Query: 9 PASNKGQATGTK-----TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFG 173 P + K + GT+ L++GNL+FN ++K + + D+ + G + FG Sbjct: 291 PEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFG 350 Query: 174 HVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRTRD 305 +V+F SAED +KAL+ L G + G ++L+ +G + + RD Sbjct: 351 YVDFESAEDLEKALE-LTGLKVFGNEIKLE--KPKGKDSKKERD 391
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 59.7 bits (143), Expect = 2e-09 Identities = 33/119 (27%), Positives = 65/119 (54%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +KTL + NLS++ + +++ F + +++ +++G KG+ +EFAS EDA++AL+ Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 540 Query: 219 ALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 + N ++ GR +RL+L RG+ R++ +FVKG E+ ++ Sbjct: 541 SCNKREIEGRAIRLELQGPRGSPNARSQP-----------SKTLFVKGLSEDTTEETLK 588 Score = 48.9 bits (115), Expect = 3e-06 Identities = 31/89 (34%), Positives = 48/89 (53%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASA 194 S ++ +KTL++ LS + + +K+ F G V + E G KGFG V+F S Sbjct: 562 SPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSE 619 Query: 195 EDAQKALDALNGGDLIGRPVRLDLAAERG 281 EDA+ A +A+ G++ G V LD A +G Sbjct: 620 EDAKAAKEAMEDGEIDGNKVTLDWAKPKG 648 Score = 47.8 bits (112), Expect = 6e-06 Identities = 25/80 (31%), Positives = 43/80 (53%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 +TL NL + + D++K+ F E+ RL + +DG KG ++EF + DA+K + Sbjct: 392 RTLLAKNLPYKVTQDELKEVFEDAAEI---RLVS-KDGKSKGIAYIEFKTEADAEKTFEE 447 Query: 222 LNGGDLIGRPVRLDLAAERG 281 G ++ GR + L E+G Sbjct: 448 KQGTEIDGRSISLYYTGEKG 467 Score = 47.0 bits (110), Expect = 1e-05 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 5/104 (4%) Frame = +3 Query: 9 PASNKGQATGTK-----TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFG 173 P + K + GT+ L++GNL+FN ++K + + D+ + G + FG Sbjct: 290 PEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFG 349 Query: 174 HVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRTRD 305 +V+F SAED +KAL+ L G + G ++L+ +G + + RD Sbjct: 350 YVDFESAEDLEKALE-LTGLKVFGNEIKLE--KPKGKDSKKERD 390
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 59.7 bits (143), Expect = 2e-09 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Frame = +3 Query: 3 KTPASNKGQATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHV 179 K P + K + K L + NLSF D +K FAQ G V++V + DG +GFG V Sbjct: 99 KEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFV 158 Query: 180 EFASAEDAQKALDALNGGDLIGRPVRLDLAAER 278 +F + +A KAL +N ++ GR V +D A + Sbjct: 159 QFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAK 191 Score = 51.2 bits (121), Expect = 6e-07 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKALD 218 KT+++ NLSF+ E +++ + Q GE+ VR+ H D H KG +F + E AQK L Sbjct: 334 KTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLL 393 Query: 219 ALN------GGDLIGRPVRLDLAAERGASA 290 A + G L GR +++DLA R +A Sbjct: 394 AASPENEAGGLKLDGRQLKVDLAVTRDEAA 423 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDAQKAL 215 TL++G L + +Q+++ F+Q+G V + T + +GFG+V F+ ED Q+AL Sbjct: 4 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 59.7 bits (143), Expect = 2e-09 Identities = 33/119 (27%), Positives = 65/119 (54%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +KTL + NLS++ + +++ F + +++ +++G KG+ +EFAS EDA++AL+ Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 542 Query: 219 ALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 + N ++ GR +RL+L RG+ R++ +FVKG E+ ++ Sbjct: 543 SCNKREIEGRAIRLELQGPRGSPNARSQP-----------SKTLFVKGLSEDTTEETLK 590 Score = 48.9 bits (115), Expect = 3e-06 Identities = 31/89 (34%), Positives = 48/89 (53%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASA 194 S ++ +KTL++ LS + + +K+ F G V + E G KGFG V+F S Sbjct: 564 SPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSE 621 Query: 195 EDAQKALDALNGGDLIGRPVRLDLAAERG 281 EDA+ A +A+ G++ G V LD A +G Sbjct: 622 EDAKAAKEAMEDGEIDGNKVTLDWAKPKG 650 Score = 47.8 bits (112), Expect = 6e-06 Identities = 25/80 (31%), Positives = 43/80 (53%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 +TL NL + + D++K+ F E+ RL + +DG KG ++EF + DA+K + Sbjct: 394 RTLLAKNLPYKVTQDELKEVFEDAAEI---RLVS-KDGKSKGIAYIEFKTEADAEKTFEE 449 Query: 222 LNGGDLIGRPVRLDLAAERG 281 G ++ GR + L E+G Sbjct: 450 KQGTEIDGRSISLYYTGEKG 469 Score = 47.0 bits (110), Expect = 1e-05 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 5/104 (4%) Frame = +3 Query: 9 PASNKGQATGTK-----TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFG 173 P + K + GT+ L++GNL+FN ++K + + D+ + G + FG Sbjct: 292 PEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFG 351 Query: 174 HVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRTRD 305 +V+F SAED +KAL+ L G + G ++L+ +G + + RD Sbjct: 352 YVDFESAEDLEKALE-LTGLKVFGNEIKLE--KPKGKDSKKERD 392
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 59.3 bits (142), Expect = 2e-09 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAEDAQKALD 218 +++++GN+ + +Q+K F+++G VV RL E G PKG+G E+ E A A+ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 219 ALNGGDLIGRPVRLDLAA 272 LNG + GR +R+D AA Sbjct: 76 NLNGREFSGRALRVDNAA 93
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 59.3 bits (142), Expect = 2e-09 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAEDAQKALD 218 +++++GN+ + +Q+K F+++G VV RL E G PKG+G E+ E A A+ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 219 ALNGGDLIGRPVRLDLAA 272 LNG + GR +R+D AA Sbjct: 76 NLNGREFSGRALRVDNAA 93
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 58.9 bits (141), Expect = 3e-09 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAEDAQKALD 218 +++++GN+ + +Q+K F+++G VV RL E G PKG+G E+ E A A+ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 219 ALNGGDLIGRPVRLDLAA 272 LNG + GR +R+D AA Sbjct: 76 NLNGREFSGRALRVDNAA 93
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 58.9 bits (141), Expect = 3e-09 Identities = 33/119 (27%), Positives = 64/119 (53%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +KTL + NLS++ + +++ F + +++ ++ G KG+ +EFAS EDA++AL+ Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALN 540 Query: 219 ALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 + N ++ GR +RL+L RG+ R++ +FVKG E+ ++ Sbjct: 541 SCNKMEIEGRTIRLELQGPRGSPNARSQP-----------SKTLFVKGLSEDTTEETLK 588 Score = 58.9 bits (141), Expect = 3e-09 Identities = 34/99 (34%), Positives = 53/99 (53%) Frame = +3 Query: 3 KTPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVE 182 K + + +TL NLSFNI D++K+ F + +++RL + +DG KG ++E Sbjct: 380 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE---DALEIRLVS-QDGKSKGIAYIE 435 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRT 299 F S DA+K L+ G ++ GR V L E+G RT Sbjct: 436 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERT 474 Score = 49.3 bits (116), Expect = 2e-06 Identities = 31/89 (34%), Positives = 48/89 (53%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASA 194 S ++ +KTL++ LS + + +K+ F G V + E G KGFG V+F S Sbjct: 562 SPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSE 619 Query: 195 EDAQKALDALNGGDLIGRPVRLDLAAERG 281 EDA+ A +A+ G++ G V LD A +G Sbjct: 620 EDAKAAKEAMEDGEIDGNKVTLDWAKPKG 648 Score = 41.6 bits (96), Expect = 5e-04 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 5/103 (4%) Frame = +3 Query: 3 KTPASNKGQATGTKT-----LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKG 167 + P + K + G+++ L++GNL+ N ++K ++ D+ + G + Sbjct: 289 EVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTNRK 348 Query: 168 FGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALR 296 FG+V+F SAED +KAL+ L G + G ++L+ R + +R Sbjct: 349 FGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVR 390
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 58.9 bits (141), Expect = 3e-09 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAEDAQKALD 218 +++++GN+ + +Q+K F+++G VV RL E G PKG+G E+ E A A+ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 219 ALNGGDLIGRPVRLDLAA 272 LNG + GR +R+D AA Sbjct: 76 NLNGREFSGRALRVDNAA 93
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 58.9 bits (141), Expect = 3e-09 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAEDAQKALD 218 +++++GN+ + +Q+K F+++G VV RL E G PKG+G E+ E A A+ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 219 ALNGGDLIGRPVRLDLAA 272 LNG + GR +R+D AA Sbjct: 76 NLNGREFSGRALRVDNAA 93
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 58.9 bits (141), Expect = 3e-09 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAEDAQKALD 218 +++++GN+ + +Q+K F+++G VV RL E G PKG+G E+ E A A+ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 219 ALNGGDLIGRPVRLDLAA 272 LNG + GR +R+D AA Sbjct: 76 NLNGREFSGRALRVDNAA 93
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 58.9 bits (141), Expect = 3e-09 Identities = 34/99 (34%), Positives = 53/99 (53%) Frame = +3 Query: 3 KTPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVE 182 K + + +TL NLSFNI D++K+ F + +++RL + +DG KG ++E Sbjct: 381 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE---DAMEIRLVS-QDGKSKGIAYIE 436 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRT 299 F S DA+K L+ G ++ GR V L E+G RT Sbjct: 437 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERT 475 Score = 53.9 bits (128), Expect = 9e-08 Identities = 32/119 (26%), Positives = 59/119 (49%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +KTL + NLS++ + +++ F + +++ + G PKG+ +EFAS EDA++AL+ Sbjct: 485 SKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHGKPKGYAFIEFASFEDAKEALN 541 Query: 219 ALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 + N ++ GR +RL+L S +FVKG E+ ++ Sbjct: 542 SCNKMEIEGRTIRLELQGSNSRS---------------QPSKTLFVKGLSEDTTEETLK 585 Score = 48.9 bits (115), Expect = 3e-06 Identities = 30/81 (37%), Positives = 45/81 (55%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +KTL++ LS + + +K+ F G V + E G KGFG V+F S EDA+ A + Sbjct: 567 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 624 Query: 219 ALNGGDLIGRPVRLDLAAERG 281 A+ G++ G V LD A +G Sbjct: 625 AMEDGEIDGNKVTLDWAKPKG 645 Score = 43.9 bits (102), Expect = 9e-05 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 5/103 (4%) Frame = +3 Query: 3 KTPASNKGQATGTK-----TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKG 167 + P + K + G++ L++GNL+ N +++K +++ D+ + G + Sbjct: 290 EAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTGTNRK 349 Query: 168 FGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALR 296 FG+V+F SAED +KAL+ L G + G ++L+ R + +R Sbjct: 350 FGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVR 391
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 58.5 bits (140), Expect = 4e-09 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N ++ +++K+ F + G + V++ T ++G KGFG V F EDAQKA+D +N Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G D+ G+ + R ER R + ++VK D ++ +R Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Score = 43.9 bits (102), Expect = 9e-05 Identities = 24/77 (31%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ +++++ F G + ++ E G KGFG V F+S E+A KA+ +N Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVATKPLYVALAQRK 371 Score = 42.4 bits (98), Expect = 3e-04 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ E+G KG+G V F + E A++A Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERA 154 Query: 213 LDALNGGDLIGRPV-------RLDLAAERGASA 290 +D +NG L R V R + AE GA A Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + + F+ G ++ +R+ G+ +V F DA++ALD Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 222 LNGGDLIGRPVRL 260 +N + GRPVR+ Sbjct: 72 MNFDVIKGRPVRI 84
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 58.2 bits (139), Expect = 5e-09 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKAL 215 ++ L++GNLSF++ D +++ F G++V +R+AT ED G KGF ++F + E + L Sbjct: 238 SRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNEL 297 Query: 216 DALNGGDLIGRPVRLDLAAERGASALRTR 302 + + GRP+R++ +R +R + Sbjct: 298 KDKSCRKIAGRPLRMEYGEDRSKRQVRKK 326
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 57.8 bits (138), Expect = 6e-09 Identities = 30/86 (34%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAED 200 G +G + +++GNLS+ ++ ++ F++ G+VV+ R+ D G KGFG V + S+++ Sbjct: 199 GAGSGNR-VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257 Query: 201 AQKALDALNGGDLIGRPVRLDLAAER 278 Q A+ +L+G DL GR +R+ A R Sbjct: 258 VQNAIKSLDGADLDGRQIRVSEAEAR 283 Score = 49.7 bits (117), Expect = 2e-06 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++GNL FN++ Q+ Q F G V V + + G +GFG V +S + + A Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 225 NGGDLIGRPVRLD 263 NG +L GRP+R++ Sbjct: 153 NGYELDGRPLRVN 165
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 56.2 bits (134), Expect = 2e-08 Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFAS 191 S + + T L++G+L+ N++ + ++ F + + + G +G+G V F S Sbjct: 152 SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS 211 Query: 192 AEDAQKALDALNGGDLIGRPVRLDLAAER 278 +DAQ A+D++ G DL GRP+R++ AA+R Sbjct: 212 QDDAQNAMDSMQGQDLNGRPLRINWAAKR 240 Score = 45.8 bits (107), Expect = 2e-05 Identities = 24/89 (26%), Positives = 46/89 (51%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDA 203 G+ T + L++GNL I D +KQ+F G + ++++ ++ + VE+ + DA Sbjct: 68 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDA 127 Query: 204 QKALDALNGGDLIGRPVRLDLAAERGASA 290 AL LNG + V+++ A + S+ Sbjct: 128 NIALQTLNGKQIENNIVKINWAFQSQQSS 156
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 55.8 bits (133), Expect = 2e-08 Identities = 33/127 (25%), Positives = 61/127 (48%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASA 194 + KG +K L + NLS++ D +++ F + +R+ ++ G KGF +EF+SA Sbjct: 405 NKKGPEGDSKVLVVNNLSYSATEDSLREVFEK---ATSIRIPQNQ-GRAKGFAFIEFSSA 460 Query: 195 EDAQKALDALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSS 374 EDA+ A+D+ N ++ GR +RL+ + G +FV+G Sbjct: 461 EDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQG--------GGRGGSAQSKTLFVRGLSED 512 Query: 375 QQEDAIR 395 E+ ++ Sbjct: 513 TTEETLK 519 Score = 54.7 bits (130), Expect = 5e-08 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAE 197 +G + +KTL++ LS + + +K+ F V+ R+ T D G KGFG V+F++AE Sbjct: 495 RGGSAQSKTLFVRGLSEDTTEETLKEAF---DGSVNARIVTDRDTGASKGFGFVDFSTAE 551 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAERGAS 287 DA+ A +A+ G++ G V LD A +G S Sbjct: 552 DAKAAKEAMEDGEIDGNKVTLDFAKPKGDS 581 Score = 53.5 bits (127), Expect = 1e-07 Identities = 26/93 (27%), Positives = 55/93 (59%) Frame = +3 Query: 12 ASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFAS 191 A NK + ++TL++ N+ ++ +++++ F D+R+ T +DG KG +VEF++ Sbjct: 315 AENKKERD-SRTLFVKNIPYSTTVEELQEIFEN---AKDIRIPTGKDGSNKGIAYVEFSN 370 Query: 192 AEDAQKALDALNGGDLIGRPVRLDLAAERGASA 290 ++A KAL+ G ++ GR + +D E+ ++ Sbjct: 371 EDEANKALEEKQGAEIEGRSIFVDFTGEKSQNS 403 Score = 43.5 bits (101), Expect = 1e-04 Identities = 22/75 (29%), Positives = 45/75 (60%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 ++++GNL+ E+D++K + ++ + G+ K FG+V+F+S E+ +KAL L Sbjct: 233 SIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKFGYVDFSSEEEVEKAL-KL 291 Query: 225 NGGDLIGRPVRLDLA 269 G ++G V+++ A Sbjct: 292 TGKKILGTEVKIEKA 306
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 55.1 bits (131), Expect = 4e-08 Identities = 31/119 (26%), Positives = 59/119 (49%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +KTL + NLS+ + +++ F + +++ + G PKG+ VEF +AEDA++AL+ Sbjct: 460 SKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALN 516 Query: 219 ALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 + N ++ GR +RL+ +S + +FV+G E+ +R Sbjct: 517 SCNNTEIEGRAIRLEF-----SSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLR 570 Score = 51.2 bits (121), Expect = 6e-07 Identities = 24/79 (30%), Positives = 47/79 (59%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 +TL++ NL + + D++K F ++VRL +++G KG ++EF + +A+KAL+ Sbjct: 371 RTLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEE 427 Query: 222 LNGGDLIGRPVRLDLAAER 278 G ++ GR + +D E+ Sbjct: 428 KQGTEVDGRAMVIDYTGEK 446 Score = 49.7 bits (117), Expect = 2e-06 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKAL 215 +KTL++ LS + + +++ F + R+ T D G KGFG V+F+S EDA+ A Sbjct: 552 SKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608 Query: 216 DALNGGDLIGRPVRLDLAAERG 281 +A+ G++ G V LD A +G Sbjct: 609 EAMEDGEIDGNKVTLDFAKPKG 630 Score = 43.9 bits (102), Expect = 9e-05 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 5/83 (6%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQ----VKQFFAQIG-EVVDVRLATHEDGHPKGFGHVEFASAEDAQK 209 +L++ NL+ +Y++ +K+FF + +V +VR+ G K FG+V+F SAED K Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI-----GSSKRFGYVDFLSAEDMDK 336 Query: 210 ALDALNGGDLIGRPVRLDLAAER 278 AL LNG L+G ++L+ A + Sbjct: 337 ALQ-LNGKKLMGLEIKLEKAKSK 358
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 55.1 bits (131), Expect = 4e-08 Identities = 27/81 (33%), Positives = 43/81 (53%) Frame = +3 Query: 30 ATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQK 209 A +TL++GNL + + + + F Q G V+ V++ +DG PK F V F Sbjct: 6 AEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65 Query: 210 ALDALNGGDLIGRPVRLDLAA 272 A++ LNG L GRP+++ A Sbjct: 66 AMNLLNGIKLFGRPIKIQFRA 86
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 55.1 bits (131), Expect = 4e-08 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N ++ + +K+ F+Q G+ + V++ +G KGFG V + EDA KA++ +N Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G ++ G+ + R ER A R + +++K D + ++ +R Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311 Score = 47.4 bits (111), Expect = 8e-06 Identities = 25/77 (32%), Positives = 46/77 (59%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ +++++ F+ G + ++ EDG KGFG V F+S E+A KA+ +N Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVGSKPLYVALAQRK 371 Score = 38.9 bits (89), Expect = 0.003 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 7/93 (7%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ E+G KG+ V F + E A KA Sbjct: 96 SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKA 154 Query: 213 LDALNGGDLIGRPV-------RLDLAAERGASA 290 ++ +NG L R V R + AE GA A Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187 Score = 37.7 bits (86), Expect = 0.007 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + + F+ G V+ +R+ G+ +V F DA++ALD Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 222 LNGGDLIGRPVRL 260 +N + G+P+R+ Sbjct: 72 MNFDVIKGKPIRI 84
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 55.1 bits (131), Expect = 4e-08 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N + + + +++K+FF G++ ++ + EDG KGFG V F + E A+ A+ ALN Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244 Query: 228 GGDL-IGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G D+ G+ + R AER R + ++VK D + +D +R Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304 Score = 47.8 bits (112), Expect = 6e-06 Identities = 25/77 (32%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ D+++ F+ G + ++ T E+G KGFG V F +A +A A+ LN Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 349 GRVVGSKPLYVALAQRK 365 Score = 46.2 bits (108), Expect = 2e-05 Identities = 23/74 (31%), Positives = 41/74 (55%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL I+ + F+ G ++ ++AT E G+ KG+G V F + E A + Sbjct: 87 SGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTS 146 Query: 213 LDALNGGDLIGRPV 254 +D +NG L G+ V Sbjct: 147 IDKVNGMLLNGKKV 160 Score = 34.3 bits (77), Expect = 0.073 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + F+ G V+ +R+ G+ +V F DA++ALD Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62 Query: 222 LNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAI 392 +N + +P+R+ + ++R S R+ VF+K D + AI Sbjct: 63 MNFDLVRNKPIRI-MWSQRDPSLRRS------------GVGNVFIKNLDRAIDNKAI 106
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 53.9 bits (128), Expect = 9e-08 Identities = 25/77 (32%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L + N+ FN+ + VK F G++ V L + KGFG++++ + A+ AL+ +N Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMN 401 Query: 228 GGDLIGRPVRLDLAAER 278 G DL GR +R+ L ++ Sbjct: 402 GFDLAGRNMRVCLGNDK 418 Score = 40.4 bits (93), Expect = 0.001 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALD 218 +T+++ L+ + ++ FF Q G V D ++ + G KG +VEF + Q A+ Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI- 298 Query: 219 ALNGGDLIGRPVRLDLA-AERGASA 290 AL+G L+G PV + L AE+ A Sbjct: 299 ALSGKRLLGLPVIVQLTEAEKNRKA 323
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 53.9 bits (128), Expect = 9e-08 Identities = 29/85 (34%), Positives = 52/85 (61%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDA 203 G GT+ +++GNL+ ++ D ++ F + G++ V +A + P GF VEF +DA Sbjct: 2 GDQRGTR-VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN----PPGFAFVEFEHRDDA 56 Query: 204 QKALDALNGGDLIGRPVRLDLAAER 278 +KA D LNG +L+G +R++++ R Sbjct: 57 EKACDILNGSELLGSQLRVEISKGR 81
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 53.5 bits (127), Expect = 1e-07 Identities = 26/77 (33%), Positives = 42/77 (54%) Frame = +3 Query: 30 ATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQK 209 A +TL++GNL + + + + F Q G V+ V++ +DG PK F V F Sbjct: 6 AEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65 Query: 210 ALDALNGGDLIGRPVRL 260 A++ LNG L GRP+++ Sbjct: 66 AMNLLNGIKLYGRPIKI 82
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 53.5 bits (127), Expect = 1e-07 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Frame = +3 Query: 9 PASNKGQAT---GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGH 176 PA++ G G +L++G+L FN+ Q+ F Q+G VV VR+ G+G+ Sbjct: 22 PATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGY 81 Query: 177 VEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFV 356 V F + +DA +A+ LN L G+P+R+ + + R S R+ +F+ Sbjct: 82 VNFTNPQDAARAIQELNYIPLYGKPIRV-MYSHRDPSVRRS------------GAGNIFI 128 Query: 357 KGFDSSQQEDAI 392 K D S A+ Sbjct: 129 KNLDESIDHKAL 140 Score = 52.4 bits (124), Expect = 3e-07 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I++ + F+ G +V ++A G KG+G V++A+ E AQKA Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKA 180 Query: 213 LDALNGGDLIGRPVRLD---LAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQE 383 ++ LNG L + V + ER ++A +T+ V+VK S + Sbjct: 181 IEKLNGMLLNDKQVYVGPFLRRQERDSTANKTK------------FTNVYVKNLAESTTD 228 Query: 384 DAIRS 398 D +++ Sbjct: 229 DDLKN 233 Score = 45.4 bits (106), Expect = 3e-05 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = +3 Query: 30 ATGTKT----LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAE 197 +T KT +++ NL+ + D +K F + G++ + +G KGFG V F +A+ Sbjct: 207 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENAD 266 Query: 198 DAQKALDALNG 230 DA +A+++LNG Sbjct: 267 DAARAVESLNG 277
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.8 bits (125), Expect = 2e-07 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Frame = +3 Query: 30 ATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQ 206 AT + L++G L+ ++ + F G++ D+++ +E +GF VEF AEDA Sbjct: 2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61 Query: 207 KALDALNGGDLIGRPVRLDLA 269 A+D +N +L GR +R++LA Sbjct: 62 AAIDNMNESELFGRTIRVNLA 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.8 bits (125), Expect = 2e-07 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Frame = +3 Query: 30 ATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQ 206 AT + L++G L+ ++ + F G++ D+++ +E +GF VEF AEDA Sbjct: 2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61 Query: 207 KALDALNGGDLIGRPVRLDLA 269 A+D +N +L GR +R++LA Sbjct: 62 AAIDNMNESELFGRTIRVNLA 82
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 52.4 bits (124), Expect = 3e-07 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDA 221 T +GNLSF++ + + FF + V +RL +GFG+VEF +A+ AL A Sbjct: 95 TAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAAL-A 151 Query: 222 LNGGDLIGRPVRLDLAAERGASALRTR 302 L+G DL+GRPVR+ +A R + A R Sbjct: 152 LSGEDLMGRPVRITVAEPRRSFAREER 178
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 52.4 bits (124), Expect = 3e-07 Identities = 32/96 (33%), Positives = 47/96 (48%) Frame = +3 Query: 3 KTPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVE 182 K + K A TK + + NL F V+ F G++ VR+ D +GFG + Sbjct: 685 KEDTAKKIAARRTKII-IKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFAD 743 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAERGASA 290 F SA +A+ A+DAL L+GR + L+ A E A Sbjct: 744 FVSAREAENAMDALKNTHLLGRRLVLEFANEEAIDA 779 Score = 38.1 bits (87), Expect = 0.005 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 10/141 (7%) Frame = +3 Query: 6 TPASNKG--QATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK----- 164 T A+++G + T TL++ NL+F+ + + F + V R+ T D PK Sbjct: 578 TFAADEGDEEVMATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPD--PKNPGQT 635 Query: 165 ---GFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXX 335 GFG +F + AQ AL +NG L R + A+ +G A R Sbjct: 636 LSMGFGFADFKTKAQAQAALAVMNGYTL-DRHTLVVRASHKGMDAAEERRKEDTAKKIAA 694 Query: 336 XXXXVFVKGFDSSQQEDAIRS 398 + +K + +RS Sbjct: 695 RRTKIIIKNLPFQATKKDVRS 715
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 52.4 bits (124), Expect = 3e-07 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +3 Query: 51 WMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALN 227 ++G L++ + ++Q FA G+V+D ++ T E G +GFG V F+S + A++ +N Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 228 GGDLIGRPVRLDLAAERG 281 G +L GR + ++ A RG Sbjct: 71 GKELDGRNITVNQAQSRG 88
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 52.0 bits (123), Expect = 3e-07 Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Frame = +3 Query: 51 WMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALN 227 ++G L++ + ++ F+Q GE+VD ++ E G +GFG V F + + A++ +N Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 228 GGDLIGRPVRLDLAAERGASA 290 G DL GR + ++ A RG+ A Sbjct: 71 GQDLDGRSITVNEAQSRGSGA 91
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 52.0 bits (123), Expect = 3e-07 Identities = 27/81 (33%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIG--EVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 L++GNL ++++ +++ F G E+ +V + E +GFG V ++ E+A+KA++ Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEV-IYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 222 LNGGDLIGRPVRLDLAAERGA 284 LNG D+ GR + ++ AA RG+ Sbjct: 116 LNGYDMDGRQLTVNKAAPRGS 136
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 52.0 bits (123), Expect = 3e-07 Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRL-ATHEDGHPKGFGHVEFASAEDAQKALD 218 +T+++G L+ + + F G++ D+++ A +E +GF +E+ +EDA A+D Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65 Query: 219 ALNGGDLIGRPVRLDLA 269 +N +L GR +R++LA Sbjct: 66 NMNDSELCGRTIRVNLA 82
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 51.6 bits (122), Expect = 4e-07 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ N++ +Q ++ FA+ G +V L DG KGFG V + EDA KA++ALN Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 279 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAI 392 +L G + R ER + + +FVK D S ++ + Sbjct: 280 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKL 337 Score = 49.3 bits (116), Expect = 2e-06 Identities = 25/73 (34%), Positives = 44/73 (60%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 G+ +++ NL +I+ + F+ G+++ ++AT E+G KGFG V F A++A+ Sbjct: 123 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 182 Query: 216 DALNGGDLIGRPV 254 DALNG L G+ + Sbjct: 183 DALNGMLLNGQEI 195 Score = 46.2 bits (108), Expect = 2e-05 Identities = 22/77 (28%), Positives = 46/77 (59%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL +++ +++++ FA G + ++ E+G KGFG V F++ E+A KA+ N Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 382 Query: 228 GGDLIGRPVRLDLAAER 278 + G+P+ + +A + Sbjct: 383 QQIVAGKPLYVAIAQRK 399
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 51.6 bits (122), Expect = 4e-07 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDAL 224 L++G LSF+ ++Q F++ G++ +V + E +GFG V F + +DA+ A+ A+ Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 225 NGGDLIGRPVRLDLAAE 275 NG + GR +R+D A + Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 51.6 bits (122), Expect = 4e-07 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDAL 224 L++G LSF+ ++Q F++ G++ +V + E +GFG V F + +DA+ A+ A+ Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 225 NGGDLIGRPVRLDLAAE 275 NG + GR +R+D A + Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 51.6 bits (122), Expect = 4e-07 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Frame = +3 Query: 3 KTPASNKGQATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHV 179 K P K + K L + NLSF D +K F G V++V + DG +GF V Sbjct: 99 KEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFV 158 Query: 180 EFASAEDAQKALDALNGGDLIGRPVRLDLAAER 278 +F + +A KAL N ++ GR V +D A + Sbjct: 159 QFKNLLEAGKALKGANMKEIKGRTVAVDWAVAK 191 Score = 49.3 bits (116), Expect = 2e-06 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQK 209 T KT+++ NLSF+ E + + + Q G++ VR+ H D H KG +F + E AQK Sbjct: 321 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 380 Query: 210 ALDALN------GGDLIGRPVRLDLAAERGASA 290 L A + G L GR +++DLA R +A Sbjct: 381 CLAAASPEAEGGGLKLDGRQLKVDLAVTRDEAA 413 Score = 41.2 bits (95), Expect = 6e-04 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDAQKAL 215 TL++G L + DQ+++ F+Q+G V + T + +GFG+V F+ ED Q+AL Sbjct: 4 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 51.2 bits (121), Expect = 6e-07 Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDA 221 ++++GNLS+++ + FA+ G V V+L T E G +GFG VE + + A++A Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 222 LNGGDLIGRPVRLDLAAER 278 L+G + +GR ++++ A R Sbjct: 62 LDGAEWMGRDLKVNKAKPR 80
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 51.2 bits (121), Expect = 6e-07 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDAL 224 L++G LSF+ ++Q F++ G++ +V + E +GFG V F + +DA+ A+ A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 225 NGGDLIGRPVRLDLAAE 275 NG + GR +R+D A + Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 51.2 bits (121), Expect = 6e-07 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDAL 224 L++G LSF+ ++Q F++ G++ +V + E +GFG V F + +DA+ A+ A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 225 NGGDLIGRPVRLDLAAE 275 NG + GR +R+D A + Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 51.2 bits (121), Expect = 6e-07 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDAL 224 L++G LSF+ ++Q F++ G++ +V + E +GFG V F + +DA+ A+ A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 225 NGGDLIGRPVRLDLAAE 275 NG + GR +R+D A + Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 50.8 bits (120), Expect = 8e-07 Identities = 27/77 (35%), Positives = 47/77 (61%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ D++++ F+ G + ++ T E GH KGFG V F+S E+A KA+ +N Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVSTKPLYVALAQRK 371 Score = 50.1 bits (118), Expect = 1e-06 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N +++ ++++ F+ G + V++ + G +GFG V + + E+AQKA+ +N Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G ++ GR + R ER R + ++VK D +D +R Sbjct: 253 GKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + + F+ G ++ +R+ G+ ++ F DA++ALD Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71 Query: 222 LNGGDLIGRPVRL 260 +N + GRP+R+ Sbjct: 72 MNFEVIKGRPIRI 84 Score = 35.8 bits (81), Expect = 0.025 Identities = 20/74 (27%), Positives = 38/74 (51%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ E G +G+G V F + E A +A Sbjct: 96 SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETQEAANRA 154 Query: 213 LDALNGGDLIGRPV 254 + +NG L R V Sbjct: 155 IQTMNGMLLNDRKV 168
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 50.8 bits (120), Expect = 8e-07 Identities = 27/77 (35%), Positives = 47/77 (61%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ D++++ F+ G + ++ T E GH KGFG V F+S E+A KA+ +N Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVSTKPLYVALAQRK 371 Score = 50.8 bits (120), Expect = 8e-07 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N +++ ++K+ F+ G + V++ G +GFG V + + E+AQKA+ +N Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G ++ GR V R ER R + ++VK D +D +R Sbjct: 253 GKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + + F+ G ++ +R+ G+ ++ F DA++ALD Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71 Query: 222 LNGGDLIGRPVRL 260 +N + GRP+R+ Sbjct: 72 MNFEVIKGRPIRI 84 Score = 35.8 bits (81), Expect = 0.025 Identities = 20/74 (27%), Positives = 39/74 (52%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G+++ ++ E G +G+G V F + E A +A Sbjct: 96 SGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS-RGYGFVHFETQEAANRA 154 Query: 213 LDALNGGDLIGRPV 254 + +NG L R V Sbjct: 155 IQTMNGMLLNDRKV 168
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 50.8 bits (120), Expect = 8e-07 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N +++ ++++ F+ G + V++ + G +GFG V + + E+AQKA+ +N Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252 Query: 228 GGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQEDAIR 395 G ++ GR + R ER + R + ++VK D +D +R Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Score = 50.1 bits (118), Expect = 1e-06 Identities = 27/77 (35%), Positives = 46/77 (59%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL I+ D++++ F G + ++ T E GH KGFG V F+S E+A KA+ +N Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 355 GRIVSTKPLYVALAQRK 371 Score = 35.4 bits (80), Expect = 0.033 Identities = 20/74 (27%), Positives = 38/74 (51%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ E G +G+G V F + E A +A Sbjct: 96 SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETHEAANRA 154 Query: 213 LDALNGGDLIGRPV 254 + +NG L R V Sbjct: 155 IQTMNGMLLNDRKV 168 Score = 35.0 bits (79), Expect = 0.043 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDA 221 +L++G+L ++ + + F+ G ++ +R+ + ++ F DA++ALD Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71 Query: 222 LNGGDLIGRPVRL 260 +N + GRP+R+ Sbjct: 72 MNFEVIKGRPIRI 84
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 50.1 bits (118), Expect = 1e-06 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = +3 Query: 51 WMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALN 227 ++G L++ ++++ F+Q GEV+D ++ E G +GFG V F + + A+D +N Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 228 GGDLIGRPVRLDLAAERG 281 G +L GR + ++ A RG Sbjct: 69 GKELDGRTITVNEAQSRG 86
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 50.1 bits (118), Expect = 1e-06 Identities = 25/77 (32%), Positives = 41/77 (53%) Frame = +3 Query: 30 ATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQK 209 A +TL++GNL + + + + F Q G V+ V++ +DG K F V F Sbjct: 6 AEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPY 65 Query: 210 ALDALNGGDLIGRPVRL 260 A++ LNG L GRP+++ Sbjct: 66 AMNLLNGIKLFGRPIKI 82
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 50.1 bits (118), Expect = 1e-06 Identities = 26/72 (36%), Positives = 38/72 (52%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGDL 239 NL F V+ F G++ VR+ D +GFG +F SA +A+ A+DAL L Sbjct: 708 NLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDALKNTHL 767 Query: 240 IGRPVRLDLAAE 275 +GR + L+ A E Sbjct: 768 LGRRLVLEFANE 779 Score = 37.4 bits (85), Expect = 0.009 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK--------GFGHVEFASA 194 T TL++ NL+F+ ++ + F + V R+ T D PK GFG V+F + Sbjct: 596 TSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPD--PKRPGKTLSMGFGFVDFRTK 653 Query: 195 EDAQKALDALNG 230 AQ AL A++G Sbjct: 654 AQAQAALAAMDG 665 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKG-FGHVEFASAE 197 K + G + + N S+ ++ D +++ F G++ + + P G VEFA + Sbjct: 477 KQRERGNTAILVKNFSYGVKVDDLRKLFEPYGQITRLLMP------PSGTIAIVEFARPD 530 Query: 198 DAQKALDAL 224 +AQKA L Sbjct: 531 EAQKAFKGL 539
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 50.1 bits (118), Expect = 1e-06 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDAL 224 L++G L+FN + ++ F+ G + +V + E +GFG + F + E A A+ A+ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 225 NGGDLIGRPVRLDLAAERGASALRTR 302 NG L GR +R+D A G SA TR Sbjct: 68 NGESLDGRQIRVDHA---GKSARGTR 90
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 50.1 bits (118), Expect = 1e-06 Identities = 24/77 (31%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL ++ +++K F+ G + ++ T E G KGFG V + + E+A KA+ +N Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425 Query: 228 GGDLIGRPVRLDLAAER 278 L G+P+ + LA + Sbjct: 426 QRMLAGKPLYVALAQRK 442 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/77 (31%), Positives = 42/77 (54%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ NL I + F Q GE+ + L ++ P+GFG V +A+ E AQKA+D LN Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322 Query: 228 GGDLIGRPVRLDLAAER 278 + G+ + + A ++ Sbjct: 323 DKEYKGKKLYVGRAQKK 339 Score = 43.5 bits (101), Expect = 1e-04 Identities = 21/65 (32%), Positives = 37/65 (56%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 GT +++ NL I+ + F+ G+++ ++A E G+ KG+G V F S E A A+ Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225 Query: 216 DALNG 230 + +NG Sbjct: 226 EHVNG 230 Score = 43.5 bits (101), Expect = 1e-04 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = +3 Query: 12 ASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFA 188 A+ G A + +L++G L ++ + + F IG V +R+ G+ +V F Sbjct: 70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFH 129 Query: 189 SAEDAQKALDALNGGDLIGRPVRL 260 + ED +KALD LN + GRP R+ Sbjct: 130 NMEDGEKALDELNYTLIKGRPCRI 153
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 50.1 bits (118), Expect = 1e-06 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDAL 224 L++G L+F D ++Q F + G + +V + E +GFG V F + +DA+ A+ A+ Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 225 NGGDLIGRPVRLDLAAE 275 NG + GR +R+D A + Sbjct: 67 NGKSVDGRQIRVDQAGK 83
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 50.1 bits (118), Expect = 1e-06 Identities = 25/78 (32%), Positives = 39/78 (50%) Frame = +3 Query: 27 QATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQ 206 Q +T+++GNL + + + + F Q G + V + +G PK FG V F E Sbjct: 5 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVS 64 Query: 207 KALDALNGGDLIGRPVRL 260 A+ LNG L GRP+ + Sbjct: 65 YAIALLNGIRLYGRPINV 82
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 49.7 bits (117), Expect = 2e-06 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Frame = +3 Query: 6 TPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVE 182 TP+S K + +++G+LS I + +K FA G++ D R+ G KG+G V Sbjct: 102 TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRTRD 305 F + DA+ A+ + G L GR +R + A + + T++ Sbjct: 162 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202 Score = 39.7 bits (91), Expect = 0.002 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 16/92 (17%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK-----GFG----------- 173 +TL++GNLS ++ + Q F+QIG ++ T + + GF Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68 Query: 174 HVEFASAEDAQKALDALNGGDLIGRPVRLDLA 269 VEF DA AL A+NG ++G+ V+++ A Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 100 Score = 36.6 bits (83), Expect = 0.015 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 16/101 (15%) Frame = +3 Query: 3 KTPASNKGQATGTK----------------TLWMGNLSFNIEYDQVKQFFAQIGEVVDVR 134 K PA Q T TK T++ G ++ + ++Q F+ G+++++R Sbjct: 193 KPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR 252 Query: 135 LATHEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVR 257 + KG+ V F++ E A A+ ++NG + G V+ Sbjct: 253 VFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 49.7 bits (117), Expect = 2e-06 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +3 Query: 51 WMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALN 227 ++G L++ + ++ FA GE++D ++ T E G +GFG V F+S A++ +N Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 228 GGDLIGRPVRLDLAAERG 281 G +L GR + ++ A RG Sbjct: 71 GKELDGRNITVNQAQSRG 88
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 49.7 bits (117), Expect = 2e-06 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Frame = +3 Query: 6 TPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVE 182 TP+S K + +++G+LS I + +K FA G++ D R+ G KG+G V Sbjct: 85 TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 144 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRTRD 305 F + DA+ A+ + G L GR +R + A + + T++ Sbjct: 145 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185 Score = 46.2 bits (108), Expect = 2e-05 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALD 218 +TL++GNLS ++ + Q F+QIG ++ T H P F VEF DA AL Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCF--VEFYEHRDAAAALA 66 Query: 219 ALNGGDLIGRPVRLDLA 269 A+NG ++G+ V+++ A Sbjct: 67 AMNGRKILGKEVKVNWA 83 Score = 35.0 bits (79), Expect = 0.043 Identities = 17/71 (23%), Positives = 39/71 (54%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 T++ G ++ + ++Q F+ G+++++R+ KG+ V F++ E A A+ ++ Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSV 260 Query: 225 NGGDLIGRPVR 257 NG + G V+ Sbjct: 261 NGTTIEGHVVK 271
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 49.3 bits (116), Expect = 2e-06 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Frame = +3 Query: 51 WMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALN 227 ++G L++ + ++ FAQ G+V+D ++ E G +GFG V F + + A++ +N Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 228 GGDLIGRPVRLDLAAERGA 284 G DL GR + ++ A RG+ Sbjct: 71 GQDLDGRSITVNEAQSRGS 89
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Frame = +3 Query: 51 WMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALN 227 ++G L++ + ++Q F+Q G++ D ++ E G +GFG V F + + A++ +N Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 228 GGDLIGRPVRLDLAAERGA 284 G +L GR + ++ A RG+ Sbjct: 69 GQELDGRNITVNEAQSRGS 87
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 49.3 bits (116), Expect = 2e-06 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Frame = +3 Query: 51 WMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALN 227 ++G L++ + ++ F+Q GEV+D ++ E G +GFG V F + + A++ +N Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 228 GGDLIGRPVRLDLAAERGA 284 G DL GR + ++ A RG+ Sbjct: 71 GQDLDGRSITVNEAQSRGS 89
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 49.3 bits (116), Expect = 2e-06 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +3 Query: 3 KTPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHV 179 KT + + + L++GNL F +K+ F Q+G++ VRL T ED G KGFG V Sbjct: 215 KTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFV 274 Query: 180 EFASAEDAQKALD 218 +F + KA++ Sbjct: 275 DFPDIDTCMKAME 287 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 24/89 (26%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQ-----IGEV---------------VDVRLATHEDGHPKG 167 +W+GNLSF+ + + FF + I EV + + ++ + KG Sbjct: 107 IWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKG 166 Query: 168 FGHVEFASAEDAQKALD----ALNGGDLI 242 F +V+FA+ + + AL ALNG +++ Sbjct: 167 FAYVDFATEDALKLALQCSEKALNGRNIL 195
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/72 (30%), Positives = 45/72 (62%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 + ++++GNL+++ + + +FF+QIG+VV + T GH +G G VEF +++D +A+ Sbjct: 135 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTNSDDVDRAIR 193 Query: 219 ALNGGDLIGRPV 254 +G + R + Sbjct: 194 QYDGAFFMDRKI 205 Score = 35.0 bits (79), Expect = 0.043 Identities = 18/68 (26%), Positives = 30/68 (44%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDA 203 G + ++ NL F+ + F IG+V + L G P G VE+ + +DA Sbjct: 345 GGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDA 404 Query: 204 QKALDALN 227 ++ LN Sbjct: 405 DVCIERLN 412
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 48.9 bits (115), Expect = 3e-06 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ NL F++ + ++K+ F+Q G V+ + E+G KG G V F SAE A+KA +N Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKM-ENGKSKGCGTVRFESAESAEKACRIMN 574 Query: 228 GGDLIGR--PVRLD 263 G + GR VRLD Sbjct: 575 GIKISGREIDVRLD 588 Score = 48.5 bits (114), Expect = 4e-06 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 7/90 (7%) Frame = +3 Query: 12 ASNKGQATGTKT------LWMGNLSFNIEYDQVKQFFAQ-IGEVVDVRLATHEDGHPKGF 170 + +K TG K +++ N+ +++++ +K + +GEV V L +G +G Sbjct: 75 SKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGC 134 Query: 171 GHVEFASAEDAQKALDALNGGDLIGRPVRL 260 G VEF E +KAL+ +N DL GRP+ + Sbjct: 135 GVVEFKDEEFVKKALETMNKYDLSGRPLNI 164 Score = 45.8 bits (107), Expect = 2e-05 Identities = 22/74 (29%), Positives = 40/74 (54%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 T+++ NL F + + ++K+ F+ G V + +DG +G G V F A +A +A+ Sbjct: 225 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284 Query: 225 NGGDLIGRPVRLDL 266 NG L RP+ + + Sbjct: 285 NGQFLFDRPMHVKM 298
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/87 (25%), Positives = 51/87 (58%) Frame = +3 Query: 18 NKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAE 197 N+ + + L++ NL +++ +++K+ F++ G V ++ + G +GFG V +++ E Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPE 383 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAER 278 +A +AL +NG + +P+ + LA + Sbjct: 384 EALRALSEMNGKMIGRKPLYIALAQRK 410 Score = 47.0 bits (110), Expect = 1e-05 Identities = 29/129 (22%), Positives = 57/129 (44%) Frame = +3 Query: 6 TPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEF 185 +P Q +L+ G+L + + F + VV VR+ ++ G+ ++ F Sbjct: 37 SPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINF 96 Query: 186 ASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGF 365 ++ DA +A++ALN L RP+R+ L+ ++ L + +F+K Sbjct: 97 SNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGK-------------GNIFIKNL 143 Query: 366 DSSQQEDAI 392 D+S A+ Sbjct: 144 DASIDNKAL 152 Score = 45.8 bits (107), Expect = 2e-05 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = +3 Query: 15 SNKGQAT---GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEF 185 SN+ +T G +++ NL +I+ + + F+ G ++ ++A G KG+G V+F Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQF 183 Query: 186 ASAEDAQKALDALNG 230 E AQ A+D LNG Sbjct: 184 EKEESAQAAIDKLNG 198
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 48.9 bits (115), Expect = 3e-06 Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIG--EVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 L++GNL ++I+ + + Q F Q G E+ +V + E +GFG V ++ E+A KA++ Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEV-IYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 222 LNGGDLIGRPVRLDLAAERGA 284 + DL GR + ++ AA RG+ Sbjct: 158 YSQYDLNGRLLTVNKAAPRGS 178
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 48.9 bits (115), Expect = 3e-06 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDAL 224 L++G L+FN + ++ F+ G + +V + E +GFG + F + E A A+ A+ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 225 NGGDLIGRPVRLDLAAE 275 NG L GR +R+D A + Sbjct: 68 NGESLDGRQIRVDHAGK 84
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 48.9 bits (115), Expect = 3e-06 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Frame = +3 Query: 3 KTPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFA-QIGEVVDVRLATHEDGHPKGFGHV 179 K ++ +G L++ NLS+ + ++ FA Q G + + G +GFG + Sbjct: 204 KIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFI 263 Query: 180 EFASAEDAQKALDALNGGDLIGRPVRLDLAAER 278 F+SAE ALD +N +L GRP+RL++A ++ Sbjct: 264 TFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296 Score = 43.9 bits (102), Expect = 9e-05 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAEDAQKALDAL 224 L++GNL F++ Q+ + FA+ G V +V + +GF V S E+A++A+ Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175 Query: 225 NGGDLIGRPVRLD 263 +G + GR V+++ Sbjct: 176 DGSQVGGRTVKVN 188
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 48.5 bits (114), Expect = 4e-06 Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +3 Query: 51 WMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALN 227 ++G L++ + +++ F+Q G+V+D ++ E G +GFG V F + + A++ +N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 228 GGDLIGRPVRLDLAAERGA 284 G +L GR + ++ A RG+ Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 48.5 bits (114), Expect = 4e-06 Identities = 29/90 (32%), Positives = 46/90 (51%) Frame = +3 Query: 9 PASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFA 188 P+++ G G K L + N+ F +K F + G V DV + +E G KGFG V Sbjct: 143 PSTSSGP-DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGS-KGFGFVTME 200 Query: 189 SAEDAQKALDALNGGDLIGRPVRLDLAAER 278 +DA++A L+G + GR + ++ A R Sbjct: 201 RPQDAERARQELHGSMIEGRKIEVNCATAR 230
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 48.5 bits (114), Expect = 4e-06 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKA 212 G L + L N+ D+++ F+ IGEV +L + GH G+G V + +A+DA++A Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77 Query: 213 LDALNGGDLIGRPVRLDLA 269 ++ LNG L + +++ A Sbjct: 78 INTLNGLRLQSKTIKVSYA 96 Score = 31.2 bits (69), Expect = 0.62 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAED 200 G A+ +++ NL + + + Q F G V +V++ + + KGFG V + E+ Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297 Query: 201 AQKALDALNG 230 A A+ +LNG Sbjct: 298 AAMAIASLNG 307
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 48.5 bits (114), Expect = 4e-06 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 7/90 (7%) Frame = +3 Query: 12 ASNKGQATGTKT------LWMGNLSFNIEYDQVKQFFAQ-IGEVVDVRLATHEDGHPKGF 170 + +K TG K +++ N+ +++++ +K + +GEV V L +G +G Sbjct: 84 SKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGC 143 Query: 171 GHVEFASAEDAQKALDALNGGDLIGRPVRL 260 G VEF E +KAL+ +N DL GRP+ + Sbjct: 144 GVVEFKDEEFVKKALETMNKYDLSGRPLNI 173 Score = 46.6 bits (109), Expect = 1e-05 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ NL F++ + ++K+ F+Q G V+ + E+G KG G V F S E A+KA +N Sbjct: 525 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKM-ENGKSKGCGTVRFDSPESAEKACRIMN 583 Query: 228 GGDLIGR--PVRLD 263 G + GR VRLD Sbjct: 584 GIKISGREIDVRLD 597 Score = 45.8 bits (107), Expect = 2e-05 Identities = 22/74 (29%), Positives = 40/74 (54%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 T+++ NL F + + ++K+ F+ G V + +DG +G G V F A +A +A+ Sbjct: 234 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293 Query: 225 NGGDLIGRPVRLDL 266 NG L RP+ + + Sbjct: 294 NGQFLFDRPMHVKM 307
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 48.1 bits (113), Expect = 5e-06 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 5/137 (3%) Frame = +3 Query: 3 KTPASNKGQATGTKT---LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGH-PK-G 167 + P +++ A +T L + NLS + + +K F Q GEV T D H PK Sbjct: 92 RRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEV------TFADAHRPKLN 145 Query: 168 FGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXX 347 G VEFAS D + A++ L+G ++ GR ++L ++R S R+R Sbjct: 146 EGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHRSRSRSRSRTRSSSRSRSRSRS 205 Query: 348 VFVKGFDSSQQEDAIRS 398 K + S+ RS Sbjct: 206 RRSKSYSRSRSRSRSRS 222 Score = 35.8 bits (81), Expect = 0.025 Identities = 23/77 (29%), Positives = 37/77 (48%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++G L+ V++FF G + D+ L +GFG VEF DA A+ L+ Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-------RGFGFVEFEDPRDADDAVYELD 58 Query: 228 GGDLIGRPVRLDLAAER 278 G +L V ++ A R Sbjct: 59 GKELCSERVTIEHARAR 75
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 48.1 bits (113), Expect = 5e-06 Identities = 26/77 (33%), Positives = 44/77 (57%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 ++T+++GNL +I +V+ F++ G VV + L P G+ VEF A DA+ A+ Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAIH 63 Query: 219 ALNGGDLIGRPVRLDLA 269 +G D G +R++LA Sbjct: 64 GRDGYDFDGHRLRVELA 80
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/73 (31%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKAL 215 ++++++GN++ ++ +Q++ F G++ + L + G PKG+G++EF S +KAL Sbjct: 63 SRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKAL 122 Query: 216 DALNGGDLIGRPV 254 LNGG+L G+ + Sbjct: 123 Q-LNGGELKGKKI 134
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +3 Query: 84 DQVKQFFAQIGEVVDVRL-ATHEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRL 260 + + FA+ GE+ ++ L G+ KG+ VE+ + ++AQ A++ LNG DL+G+P+ + Sbjct: 87 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 146 Query: 261 DLAAERG 281 D RG Sbjct: 147 DWCFVRG 153
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +3 Query: 84 DQVKQFFAQIGEVVDVRL-ATHEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRL 260 + + FA+ GE+ ++ L G+ KG+ VE+ + ++AQ A++ LNG DL+G+P+ + Sbjct: 87 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 146 Query: 261 DLAAERG 281 D RG Sbjct: 147 DWCFVRG 153
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 47.4 bits (111), Expect = 8e-06 Identities = 23/71 (32%), Positives = 39/71 (54%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 G+ + + NL F ++ F+ G++ VRL D +GFG VE+++ +AQ A+ Sbjct: 717 GSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAM 776 Query: 216 DALNGGDLIGR 248 +AL L+GR Sbjct: 777 EALKHTHLLGR 787 Score = 43.1 bits (100), Expect = 2e-04 Identities = 23/69 (33%), Positives = 39/69 (56%) Frame = +3 Query: 87 QVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDL 266 ++++ F+Q G V DV+L DG + FG V + S ++AQ+ALD N + + ++L Sbjct: 17 RLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDYFNRTFIDTSRISIEL 76 Query: 267 AAERGASAL 293 A + G L Sbjct: 77 AKKIGDEEL 85
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 47.0 bits (110), Expect = 1e-05 Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIG--EVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 L++GNL++++ + F Q G E+ +V + E +GFG V +S ++A+ A++ Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEV-IYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 222 LNGGDLIGRPVRLDLAAERGA 284 N DL GR + ++ AA RG+ Sbjct: 211 FNRYDLNGRLLTVNKAAPRGS 231
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 47.0 bits (110), Expect = 1e-05 Identities = 19/58 (32%), Positives = 37/58 (63%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 TL++G + ++ +++++FFA+ G V +V++ T+ G KG+G V F+ D Q +D Sbjct: 48 TLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSEDVDIQTIVD 105
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 47.0 bits (110), Expect = 1e-05 Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAEDAQKALDAL 224 +++GNL+ + + +K FF++ G+V+ ++ T GFG V F+S E+ + A+ AL Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQAL 245 Query: 225 NGGDLIGRPVRLDLA 269 N L G+ +R++ A Sbjct: 246 NNSVLEGQKIRVNKA 260
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 47.0 bits (110), Expect = 1e-05 Identities = 28/83 (33%), Positives = 41/83 (49%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++G L+ + ++ FF G++ DV L GFG VEF DA+ A+ LN Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN-------GFGFVEFDDKRDAEDAVHDLN 57 Query: 228 GGDLIGRPVRLDLAAERGASALR 296 G +L G V LD + RG R Sbjct: 58 GKELGGERVILDYSKPRGGGGDR 80
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 46.6 bits (109), Expect = 1e-05 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 8/100 (8%) Frame = +3 Query: 15 SNKGQ---ATGTKT-----LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGF 170 SN+GQ T TK + + NL F V++ F G + VR+ + +GF Sbjct: 686 SNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGF 745 Query: 171 GHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASA 290 E+ SA++A+ A+ AL G L+GR + L A ++A Sbjct: 746 AFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQADASNA 785 Score = 44.3 bits (103), Expect = 7e-05 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKAL 215 T L++ NL + + + +Q F+Q GE+ +V L + + G KGF HV+F E+A A Sbjct: 300 TGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAY 359 Query: 216 DALNGGDLIGR 248 +A +G GR Sbjct: 360 EAQDGKIFQGR 370 Score = 33.9 bits (76), Expect = 0.096 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Frame = +3 Query: 6 TPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKG------ 167 T ++++ AT + ++++ NL+F + F + + ++ D KG Sbjct: 593 TGSNDERPATASTSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMG 652 Query: 168 FGHVEFASAEDAQKALDALNGGDLIGRPVRLDLA 269 FG VEF+S E A+ A A++G L G ++L ++ Sbjct: 653 FGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKIS 686 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +3 Query: 117 EVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 ++ DV++ DG + FG V F S E A+ A+ Sbjct: 37 DITDVKVVRARDGKTRRFGFVGFRSDETAEAAV 69
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 46.6 bits (109), Expect = 1e-05 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKA 212 G L + L N+ ++++ F+ IGEV +L + GH G+G V + +A+DA++A Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77 Query: 213 LDALNGGDLIGRPVRLDLA 269 + LNG L + +++ A Sbjct: 78 ISTLNGLRLQSKTIKVSYA 96 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAED 200 G A+ +++ NL + + + Q F G V +V++ + + KGFG V + E+ Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297 Query: 201 AQKALDALNG 230 + A+ +LNG Sbjct: 298 SAMAIASLNG 307
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 46.6 bits (109), Expect = 1e-05 Identities = 26/90 (28%), Positives = 45/90 (50%) Frame = +3 Query: 6 TPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEF 185 T AS+K + + + NL F V + F+ G++ VR+ D +GF VEF Sbjct: 740 TNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEF 799 Query: 186 ASAEDAQKALDALNGGDLIGRPVRLDLAAE 275 ++A+ A+D L G L+GR + ++ + Sbjct: 800 LLPKEAENAMDQLQGVHLLGRRLVMEFVEQ 829 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +3 Query: 126 DVRLATHEDGHPKGFGHVEFASAEDAQKALDALNG 230 DV+L + DG + F + F EDA ++ NG Sbjct: 41 DVKLMKNRDGESRRFAFIGFRDEEDAFDCVNYFNG 75
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/56 (33%), Positives = 34/56 (60%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 +++G + F + +++FF+Q G V +V++ G KG+G + F + EDAQK L Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKIL 90
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 46.2 bits (108), Expect = 2e-05 Identities = 20/56 (35%), Positives = 33/56 (58%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 +++G + F +++FF+Q G V +V++ G KG+G V F + EDAQK L Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKIL 90
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 46.2 bits (108), Expect = 2e-05 Identities = 20/56 (35%), Positives = 33/56 (58%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 +++G + F +++FF+Q G V +V++ G KG+G V F + EDAQK L Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKIL 90
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 46.2 bits (108), Expect = 2e-05 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Frame = +3 Query: 9 PASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEF 185 P S + Q T+++G L + + + F Q G VV+ + G +G+G VEF Sbjct: 5 PISERNQDA---TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61 Query: 186 ASAEDAQKALDALNGGDLIGRPVRLDLAA 272 S EDA A+ +N L G+P+R++ A+ Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90 Score = 42.7 bits (99), Expect = 2e-04 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Frame = +3 Query: 3 KTPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVR--LATHEDGHPKGFGH 176 K A NK G +++GNL I+ + F+ G ++ + + G+ KG+ Sbjct: 88 KASAHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146 Query: 177 VEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALR 296 + FAS + + A++A+NG L RP+ + A ++ + R Sbjct: 147 INFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 46.2 bits (108), Expect = 2e-05 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDV-RLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 L++GNL ++ + F+ +G++V ++A E+G KG+G V + S E A A++A+ Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 225 NGGDLIGRPVRLDLAAERGASALRTRD 305 N L+ +P+ + A +R R D Sbjct: 161 NNQFLMNKPITVSYAFKREGKGERHGD 187 Score = 42.0 bits (97), Expect = 4e-04 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE--DGHPKGFGHVEFASAEDAQKALD 218 T+++GNL + + + Q G VV++ + + H GFG EF +D + A Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSH-NGFGFCEFLHEQDVEYACQ 70 Query: 219 ALNGGDLIGRPVRLDLAA-ERGASAL 293 LN L G+P+R++ A+ +RG + L Sbjct: 71 ILNQVKLFGKPIRVNRASQDRGVNTL 96
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 46.2 bits (108), Expect = 2e-05 Identities = 29/122 (23%), Positives = 57/122 (46%) Frame = +3 Query: 27 QATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQ 206 Q +L++G+L ++ + F Q+ V ++R+ G+ +V FA+ EDA Sbjct: 40 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDAS 99 Query: 207 KALDALNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDSSQQED 386 +A+++LN + RP+R+ L+ ++ L + VF+K D+S Sbjct: 100 RAMESLNYAPIRDRPIRIMLSNRDPSTRLSGK-------------GNVFIKNLDASIDNK 146 Query: 387 AI 392 A+ Sbjct: 147 AL 148 Score = 44.7 bits (104), Expect = 5e-05 Identities = 20/77 (25%), Positives = 45/77 (58%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ NL ++ +++K+ F++ G V ++ + G +GFG V +++ E+A A+ +N Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + LA + Sbjct: 390 GKMIGRKPLYVALAQRK 406 Score = 44.7 bits (104), Expect = 5e-05 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = +3 Query: 15 SNKGQAT---GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEF 185 SN+ +T G +++ NL +I+ + + F+ G ++ ++A G KG+G V+F Sbjct: 120 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQF 179 Query: 186 ASAEDAQKALDALNG 230 E AQ A+D LNG Sbjct: 180 EKEETAQAAIDKLNG 194 Score = 41.2 bits (95), Expect = 6e-04 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASA 194 S G +++ NL I D++K+ F + G++ + + G+ + FG V F S Sbjct: 216 SESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSP 275 Query: 195 EDAQKALDALNG---GDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGF 365 E A A++ +NG G+ + R ++R R + +++K Sbjct: 276 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNL 335 Query: 366 DSSQQEDAIR 395 D S ++ ++ Sbjct: 336 DDSVNDEKLK 345
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 45.8 bits (107), Expect = 2e-05 Identities = 20/61 (32%), Positives = 39/61 (63%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L+M NL ++ D +++ FA+ G++V + +A E+ +G+ V F + EDA++A + +N Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262 Query: 228 G 230 G Sbjct: 263 G 263 Score = 45.1 bits (105), Expect = 4e-05 Identities = 20/77 (25%), Positives = 45/77 (58%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ N++ + +++++ F+Q G + +L E G KGFG V F++ E+A A+ + Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365 Query: 228 GGDLIGRPVRLDLAAER 278 G G+P+ + +A ++ Sbjct: 366 GQMFHGKPLYVAIAQKK 382 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/64 (29%), Positives = 35/64 (54%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 G +++ NL ++ ++ F + G +V ++AT EDG +G+G V+F + A A+ Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169 Query: 216 DALN 227 LN Sbjct: 170 QTLN 173
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 45.8 bits (107), Expect = 2e-05 Identities = 21/74 (28%), Positives = 41/74 (55%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 T+++ NL + + + ++K+ F+ G VV + +DG +G G V F + +A +A+ Sbjct: 204 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 263 Query: 225 NGGDLIGRPVRLDL 266 NG L RP+ + + Sbjct: 264 NGQLLFDRPMHVKM 277 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQ-IGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGD 236 N+ F++++ +K + +GEV V L +G +G VEF E +KA + LN Sbjct: 76 NIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHS 135 Query: 237 LIGRPVRL 260 L GRP+++ Sbjct: 136 LSGRPLKV 143 Score = 42.0 bits (97), Expect = 4e-04 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVV--DVRLATHEDGHPKGFGHVEFASAE 197 G A +++ NL F+ + +K F + G V+ D+++ E+G KG G V+F S E Sbjct: 646 GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM---ENGKSKGCGVVKFESPE 702 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAERGA 284 A++A +NG L GR +D+ +R A Sbjct: 703 VAERACRMMNGMKLSGR--EIDVRIDRNA 729
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 45.8 bits (107), Expect = 2e-05 Identities = 21/74 (28%), Positives = 41/74 (55%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 T+++ NL + + + ++K+ F+ G VV + +DG +G G V F + +A +A+ Sbjct: 164 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 223 Query: 225 NGGDLIGRPVRLDL 266 NG L RP+ + + Sbjct: 224 NGQLLFDRPMHVKM 237 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQ-IGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGD 236 N+ F++++ +K + +GEV V L +G +G VEF E +KA + LN Sbjct: 75 NIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHS 134 Query: 237 LIGRPVRL 260 L GRP+++ Sbjct: 135 LSGRPLKV 142 Score = 42.0 bits (97), Expect = 4e-04 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVV--DVRLATHEDGHPKGFGHVEFASAE 197 G A +++ NL F+ + +K F + G V+ D+++ E+G KG G V+F S E Sbjct: 606 GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM---ENGKSKGCGVVKFESPE 662 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAERGA 284 A++A +NG L GR +D+ +R A Sbjct: 663 VAERACRMMNGMKLSGR--EIDVRIDRNA 689
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 45.8 bits (107), Expect = 2e-05 Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Frame = +3 Query: 18 NKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASA 194 N ++ +++++GN+ +++ ++++ FA G V V + + GHPKGF ++EF+ Sbjct: 47 NDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106 Query: 195 EDAQKALDALNGGDLIGRPVRL 260 AL LNG L RP+++ Sbjct: 107 SLVPNAL-LLNGSMLHERPLKV 127
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 45.8 bits (107), Expect = 2e-05 Identities = 25/77 (32%), Positives = 39/77 (50%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGDL 239 NL F V + F G++ VR+ D +GF VEF ++A+ A+D L G L Sbjct: 744 NLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAMDQLQGVHL 803 Query: 240 IGRPVRLDLAAERGASA 290 +GR + + A + A+A Sbjct: 804 LGRRLVMQPAEQEAANA 820 Score = 37.4 bits (85), Expect = 0.009 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK------GFGHVEFASAED 200 T ++++ NL+F Q+ F V ++ T D K GFG VEF + E Sbjct: 639 TVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQ 698 Query: 201 AQKALDALNGGDLIGRPVRLDLAAERG 281 A + A++G + G ++L L+ +G Sbjct: 699 ATAVISAMDGTVIDGHKIQLKLSHRQG 725 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/52 (21%), Positives = 28/52 (53%) Frame = +3 Query: 114 GEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLA 269 G + D+R+ + +G + F + + + +DA A++ +G + + +D+A Sbjct: 37 GLITDLRILKNREGKSRRFAFIGYKNEQDALDAVNYFDGSFIYTSKIEVDMA 88
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 45.4 bits (106), Expect = 3e-05 Identities = 21/74 (28%), Positives = 41/74 (55%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 T+++ NL + + + ++K+ F+ G VV + +DG +G G V F + +A +A+ Sbjct: 203 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMF 262 Query: 225 NGGDLIGRPVRLDL 266 NG L RP+ + + Sbjct: 263 NGQLLFDRPMHVKM 276 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQ-IGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGD 236 N+ F++++ +K + +GEV V L +G +G VEF E +KA + LN Sbjct: 75 NIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHS 134 Query: 237 LIGRPVRL 260 L GRP+++ Sbjct: 135 LSGRPLKV 142 Score = 42.0 bits (97), Expect = 4e-04 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVV--DVRLATHEDGHPKGFGHVEFASAE 197 G A +++ NL F+ + +K F + G V+ D+++ E+G KG G V+F S E Sbjct: 645 GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM---ENGKSKGCGVVKFESPE 701 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAERGA 284 A++A +NG L GR +D+ +R A Sbjct: 702 VAERACRMMNGMKLSGR--EIDVRIDRNA 728
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 45.4 bits (106), Expect = 3e-05 Identities = 22/68 (32%), Positives = 39/68 (57%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 ++++ NL+F+ + +K+ F +GEVV+ + T + GH +G G VEF E Q A+ Sbjct: 123 SIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKF 181 Query: 225 NGGDLIGR 248 +G + R Sbjct: 182 DGALFMDR 189 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/63 (26%), Positives = 35/63 (55%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGDL 239 NL +++ + +K F + G V+ + +G +GFG V + + ++ +A+D NG ++ Sbjct: 225 NLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEV 284 Query: 240 IGR 248 GR Sbjct: 285 EGR 287 Score = 35.8 bits (81), Expect = 0.025 Identities = 19/74 (25%), Positives = 34/74 (45%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 ++ NL F+ + F IG++ + L E+G P G VE+ + DA + LN Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYENLVDADFCIQKLN 410 Query: 228 GGDLIGRPVRLDLA 269 + G +++ A Sbjct: 411 NYNYGGCSLQISYA 424
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 45.4 bits (106), Expect = 3e-05 Identities = 24/74 (32%), Positives = 42/74 (56%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++G LS+N+ +++FF+ G +++V L G+G VEF + DA A+ LN Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKN-------GYGFVEFEDSRDADDAVYELN 56 Query: 228 GGDLIGRPVRLDLA 269 G +L G V ++ A Sbjct: 57 GKELCGERVIVEHA 70 Score = 43.1 bits (100), Expect = 2e-04 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK--GFGHVEFASAEDAQKALDALNGG 233 NLS + +K F Q GEV T+ D H + G +EF S D ++ALD L+G Sbjct: 116 NLSSRCSWQDLKDFMRQAGEV------TYADAHKERTNEGVIEFRSYSDMKRALDKLDGT 169 Query: 234 DLIGRPVRL 260 ++ GR +RL Sbjct: 170 EINGRNIRL 178
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 45.1 bits (105), Expect = 4e-05 Identities = 25/77 (32%), Positives = 38/77 (49%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGDL 239 NL F V + F G++ VR+ D +GF VEF ++A+ A+D L+G L Sbjct: 769 NLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHL 828 Query: 240 IGRPVRLDLAAERGASA 290 +GR + + A E A Sbjct: 829 LGRRLVMQYAEEDAVDA 845 Score = 32.7 bits (73), Expect = 0.21 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 8/96 (8%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK--------GFGHVEFASA 194 T ++++ NL+F+ + F V ++ T D PK GFG VEF + Sbjct: 662 TVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPD--PKHQGKTLSMGFGFVEFRTK 719 Query: 195 EDAQKALDALNGGDLIGRPVRLDLAAERGASALRTR 302 E A + A++G + G ++L L+ + + + T+ Sbjct: 720 EQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTK 755 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/50 (24%), Positives = 26/50 (52%) Frame = +3 Query: 120 VVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLA 269 + DV++ +G + FG + + + EDA A++ NG + + + +A Sbjct: 43 ITDVKILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMA 92
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 45.1 bits (105), Expect = 4e-05 Identities = 25/85 (29%), Positives = 47/85 (55%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASA 194 + K GTK L + NL F + +V+ F+ G++V +R+ + +GF EF++A Sbjct: 696 AKKAANQGTK-LVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTA 754 Query: 195 EDAQKALDALNGGDLIGRPVRLDLA 269 ++A A ++L ++GR + +D A Sbjct: 755 KEALNAFNSLKDTHILGRRLVIDFA 779 Score = 43.5 bits (101), Expect = 1e-04 Identities = 26/85 (30%), Positives = 42/85 (49%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 T L++ NLS+ + D V++ FA+ G +V+V + GH KGF + + A A Sbjct: 307 TSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASALAAFQ 366 Query: 219 ALNGGDLIGRPVRLDLAAERGASAL 293 +G GR V + AA + + L Sbjct: 367 T-DGTVFQGRIVHILPAAAKRENKL 390
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 44.7 bits (104), Expect = 5e-05 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Frame = +3 Query: 18 NKGQATGTKTLWMGN-LSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFAS 191 + G +KT + N L N+ +++K F IGE+ +L + G G+G V + Sbjct: 30 DSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 192 AEDAQKALDALNGGDLIGRPVRLDLAAERGAS 287 +DA+KA++ LNG L + +++ A AS Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDAQKALDAL 224 +++ NL+ + + + Q F G V +V++ + + KGFG V + ++A A+ +L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 225 NGGDLIGRPVRLDLAAER 278 NG L R +++ + Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 44.7 bits (104), Expect = 5e-05 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +3 Query: 42 KTLWMGNL-SFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +T+++GNL S DQ+ +FF Q+GEV VR+A E P F VEFA +AL Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRAL- 123 Query: 219 ALNGGDLIGRPVRLD 263 A NG RP++++ Sbjct: 124 AFNGVMFGDRPLKIN 138
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 44.7 bits (104), Expect = 5e-05 Identities = 27/91 (29%), Positives = 45/91 (49%) Frame = +3 Query: 3 KTPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVE 182 KT +K + +G + + NL F V + F+ G++ VR+ D +GF VE Sbjct: 701 KTSKGSKKKISGK--IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVE 758 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAE 275 F +A+ A+D L G L+GR + + A + Sbjct: 759 FLLPSEAENAMDQLQGVHLLGRRLVMQYAEQ 789 Score = 37.4 bits (85), Expect = 0.009 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 9/103 (8%) Frame = +3 Query: 3 KTPASNKGQATG-TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK----- 164 KTP+S G T ++++ NL+F+ Q+ + F V ++ T D PK Sbjct: 598 KTPSSEATAIDGPTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPD--PKNSDKK 655 Query: 165 ---GFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGA 284 GFG +EF + E A + A++G + G ++L ++ ++ + Sbjct: 656 LSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSS 698 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/38 (26%), Positives = 22/38 (57%) Frame = +3 Query: 117 EVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNG 230 ++ DV++ + G+ + F + + S +DA A++ NG Sbjct: 36 QITDVKIVKDKSGNSRRFAFIGYRSEQDAFDAIEYFNG 73
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 44.7 bits (104), Expect = 5e-05 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQK 209 T +++GN+ +++ Q+ + F Q+G V +L E G KG+G EF +E Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63 Query: 210 ALDALNGGDLIGRPVRLD 263 A+ LN +L R +R++ Sbjct: 64 AVRKLNNSELGPRKIRVE 81
>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (SR-related protein of 86 kDa) Length = 494 Score = 44.7 bits (104), Expect = 5e-05 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +3 Query: 42 KTLWMGNL-SFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +T+++GNL S DQ+ +FF Q+GEV VR+A E P F VEFA +AL Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRAL- 126 Query: 219 ALNGGDLIGRPVRLD 263 A NG RP++++ Sbjct: 127 AFNGVMFGDRPLKIN 141
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 44.7 bits (104), Expect = 5e-05 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +3 Query: 42 KTLWMGNL-SFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 +T+++GNL S DQ+ +FF Q+GEV VR+A E P F VEFA +AL Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRAL- 126 Query: 219 ALNGGDLIGRPVRLD 263 A NG RP++++ Sbjct: 127 AFNGVMFGDRPLKIN 141
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 44.7 bits (104), Expect = 5e-05 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALD 218 +++++GNL + +E +++ F G ++ VR+ + G KGFG+V F + + AL Sbjct: 287 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL- 345 Query: 219 ALNGGDLIGRPVRL 260 LN +L+GR +R+ Sbjct: 346 KLNNSELMGRKLRV 359 Score = 27.7 bits (60), Expect = 6.9 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 18/104 (17%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRL---------------ATHEDGHPKGFGH 176 +T+++GNL ++K FF + G++ VR A HP Sbjct: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244 Query: 177 VEFASAEDAQKALDAL--NGGDLI-GRPVRLDLAAERGASALRT 299 + ++ A AL NG + G +R+DLA+E + R+ Sbjct: 245 NAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRS 288
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 44.7 bits (104), Expect = 5e-05 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKA 212 G +L + NL++ D +++ F + G V DV + +GF V F DA+ A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 213 LDALNGGDLIGRPVRLDLA 269 +DA++G L GR +R+ +A Sbjct: 72 MDAMDGAVLDGRELRVQMA 90
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 44.7 bits (104), Expect = 5e-05 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKA 212 G +L + NLS+ + +++ F + G++ DV + + KGFG V F DA+ A Sbjct: 17 GLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHA 76 Query: 213 LDALNGGDLIGRPVRLDLA 269 LD +G + GR +R+ LA Sbjct: 77 LDRTDGKLVDGRELRVTLA 95
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 44.7 bits (104), Expect = 5e-05 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++G LS + +K F+ V + R+ T++ G +G+G V F S + A A+ A+ Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92 Query: 225 NGGDLIGRPVRLDLAAE 275 NG +L G + +++A + Sbjct: 93 NGQELNGFNISVNVAKD 109
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 44.7 bits (104), Expect = 5e-05 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKA 212 G +L + NL++ D +++ F + G V DV + +GF V F DA+ A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 213 LDALNGGDLIGRPVRLDLA 269 +DA++G L GR +R+ +A Sbjct: 71 MDAMDGAVLDGRELRVQMA 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 44.7 bits (104), Expect = 5e-05 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKA 212 G +L + NL++ D +++ F + G V DV + +GF V F DA+ A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 213 LDALNGGDLIGRPVRLDLA 269 +DA++G L GR +R+ +A Sbjct: 71 MDAMDGAVLDGRELRVQMA 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 44.7 bits (104), Expect = 5e-05 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKA 212 G +L + NL++ D +++ F + G V DV + +GF V F DA+ A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 213 LDALNGGDLIGRPVRLDLA 269 +DA++G L GR +R+ +A Sbjct: 71 MDAMDGAVLDGRELRVQMA 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 44.7 bits (104), Expect = 5e-05 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKA 212 G +L + NL++ D +++ F + G V DV + +GF V F DA+ A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 213 LDALNGGDLIGRPVRLDLA 269 +DA++G L GR +R+ +A Sbjct: 71 MDAMDGAVLDGRELRVQMA 89
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 44.3 bits (103), Expect = 7e-05 Identities = 23/61 (37%), Positives = 35/61 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++G+L+ +V++ F Q G V DV L E +G G V+++S E A A+D LN Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272 Query: 228 G 230 G Sbjct: 273 G 273
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 44.3 bits (103), Expect = 7e-05 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDAL 224 +++G+LS I + +K FA G + D R+ G KG+G V F + DA+ A+ + Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 225 NGGDLIGRPVRLDLAAER 278 G L GR +R + A + Sbjct: 168 GGQWLGGRQIRTNWATRK 185 Score = 43.1 bits (100), Expect = 2e-04 Identities = 29/105 (27%), Positives = 48/105 (45%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 KTL++GNLS ++ + Q F+QIG + ++ G+ + VEF A AL A Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAA 65 Query: 222 LNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFV 356 +NG ++G+ V+++ A + T VFV Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFV 110 Score = 35.8 bits (81), Expect = 0.025 Identities = 18/71 (25%), Positives = 39/71 (54%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 T++ G ++ + ++Q F+ G+++++R+ KG+ V F+S E A A+ ++ Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSV 269 Query: 225 NGGDLIGRPVR 257 NG + G V+ Sbjct: 270 NGTTIEGHVVK 280
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 44.3 bits (103), Expect = 7e-05 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDAL 224 +++G+LS I + +K FA G + D R+ G KG+G V F + DA+ A+ + Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 225 NGGDLIGRPVRLDLAAER 278 G L GR +R + A + Sbjct: 168 GGQWLGGRQIRTNWATRK 185 Score = 43.1 bits (100), Expect = 2e-04 Identities = 29/105 (27%), Positives = 48/105 (45%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 KTL++GNLS ++ + Q F+QIG + ++ G+ + VEF A AL A Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAA 65 Query: 222 LNGGDLIGRPVRLDLAAERGASALRTRDXXXXXXXXXXXXXXVFV 356 +NG ++G+ V+++ A + T VFV Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFV 110 Score = 34.7 bits (78), Expect = 0.056 Identities = 18/71 (25%), Positives = 38/71 (53%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDAL 224 T++ G ++ + ++Q F+ G+++++R+ KG+ V F S E A A+ ++ Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSV 269 Query: 225 NGGDLIGRPVR 257 NG + G V+ Sbjct: 270 NGTTIEGHVVK 280
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 44.3 bits (103), Expect = 7e-05 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Frame = +3 Query: 54 MGNLSFNIEYDQVKQFFAQIGEV--VDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +G L+ N+ D + + F+ G++ +D+ + + KG+ +VEF + E+A+KAL ++ Sbjct: 142 IGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMD 201 Query: 228 GGDLIGRPV 254 GG + G+ + Sbjct: 202 GGQIDGQEI 210
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 44.3 bits (103), Expect = 7e-05 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Frame = +3 Query: 18 NKGQATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFAS 191 + G +KT L + L N+ +++K F IGE+ +L + G G+G V + Sbjct: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 192 AEDAQKALDALNGGDLIGRPVRLDLAAERGAS 287 +DA+KA++ LNG L + +++ A AS Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDAQKALDAL 224 +++ NL+ + + + Q F G V +V++ + + KGFG V + ++A A+ +L Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 225 NGGDLIGRPVRLDLAAER 278 NG L R +++ + Sbjct: 339 NGYRLGDRVLQVSFKTNK 356
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 44.3 bits (103), Expect = 7e-05 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Frame = +3 Query: 3 KTPASNKGQATGTKT---LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGH-PK-G 167 + P +++ A +T L + NLS + + +K F Q GEV T D H PK Sbjct: 92 RRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEV------TFADAHRPKLN 145 Query: 168 FGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAER-GASALRTRDXXXXXXXXXXXXX 344 G VEFAS D + A++ L+G ++ GR ++L ++R S R+R Sbjct: 146 EGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSR 205 Query: 345 XVFVKGFDSSQQEDAIRS 398 K + S+ RS Sbjct: 206 SRSRKSYSRSRSRSRSRS 223 Score = 35.8 bits (81), Expect = 0.025 Identities = 23/77 (29%), Positives = 37/77 (48%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++G L+ V++FF G + D+ L +GFG VEF DA A+ L+ Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-------RGFGFVEFEDPRDADDAVYELD 58 Query: 228 GGDLIGRPVRLDLAAER 278 G +L V ++ A R Sbjct: 59 GKELCSERVTIEHARAR 75
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 44.3 bits (103), Expect = 7e-05 Identities = 18/59 (30%), Positives = 36/59 (61%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 T+++G + ++ +++ FFA+ G V +V++ T G KG+G V F + D QK +++ Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVES 99
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 44.3 bits (103), Expect = 7e-05 Identities = 18/59 (30%), Positives = 36/59 (61%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 T+++G + ++ +++ FFA+ G V +V++ T G KG+G V F + D QK +++ Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVES 99
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.3 bits (103), Expect = 7e-05 Identities = 25/77 (32%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ NL I +++K+ F+ G + ++ E G KGFG V F+S E+A KA+D +N Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + L R Sbjct: 363 GRIVGSKPLHVTLGQAR 379 Score = 43.9 bits (102), Expect = 9e-05 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAED 200 + +AT T +++ N+ +I+ +++K+ F + G V++ G KGFG V + + E Sbjct: 193 RDRATFTN-VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEA 251 Query: 201 AQKALDALNGGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDS 371 AQKA+ L+G + G+ + R ER A R + +++K D Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDE 311 Query: 372 SQQEDAIR 395 + ++ ++ Sbjct: 312 TINDEKLK 319 Score = 37.4 bits (85), Expect = 0.009 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ ++G KG+ +V F S A +A Sbjct: 103 SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRA 161 Query: 213 LDALNGGDLIGRPV---RLDLAAERGASALRTRD 305 + +NG L R V R ER A+ +RTRD Sbjct: 162 IWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRD 194 Score = 33.9 bits (76), Expect = 0.096 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++G+L ++ D + + F G + R+ P G+G+V F DA+ AL+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 225 NGGDLIGRPVRL 260 N + G+P RL Sbjct: 80 NFDLINGKPFRL 91
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.3 bits (103), Expect = 7e-05 Identities = 25/77 (32%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ NL I +++K+ F+ G + ++ E G KGFG V F+S E+A KA+D +N Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + L R Sbjct: 363 GRIVGSKPLHVTLGQAR 379 Score = 43.9 bits (102), Expect = 9e-05 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAED 200 + +AT T +++ N+ +I+ +++K+ F + G V++ G KGFG V + + E Sbjct: 193 RDRATFTN-VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEA 251 Query: 201 AQKALDALNGGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDS 371 AQKA+ L+G + G+ + R ER A R + +++K D Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDE 311 Query: 372 SQQEDAIR 395 + ++ ++ Sbjct: 312 TINDEKLK 319 Score = 37.4 bits (85), Expect = 0.009 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ ++G KG+ +V F S A +A Sbjct: 103 SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRA 161 Query: 213 LDALNGGDLIGRPV---RLDLAAERGASALRTRD 305 + +NG L R V R ER A+ +RTRD Sbjct: 162 IWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRD 194 Score = 33.9 bits (76), Expect = 0.096 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++G+L ++ D + + F G + R+ P G+G+V F DA+ AL+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 225 NGGDLIGRPVRL 260 N + G+P RL Sbjct: 80 NFDLINGKPFRL 91
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.3 bits (103), Expect = 7e-05 Identities = 25/77 (32%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ NL I +++K+ F+ G + ++ E G KGFG V F+S E+A KA+D +N Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + L R Sbjct: 363 GRVVGSKPLHVTLGQAR 379 Score = 43.9 bits (102), Expect = 9e-05 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAED 200 + +AT T +++ N+ +I+ +++K+ F + G V++ G KGFG V + + E Sbjct: 193 RDRATFTN-VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEA 251 Query: 201 AQKALDALNGGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDS 371 AQKA+ L+G + G+ + R ER A R + +++K D Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDE 311 Query: 372 SQQEDAIR 395 + ++ ++ Sbjct: 312 TINDEKLK 319 Score = 37.4 bits (85), Expect = 0.009 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ ++G KG+ +V F S A +A Sbjct: 103 SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRA 161 Query: 213 LDALNGGDLIGRPV---RLDLAAERGASALRTRD 305 + +NG L R V R ER A+ +RTRD Sbjct: 162 IWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRD 194 Score = 33.9 bits (76), Expect = 0.096 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++G+L ++ D + + F G + R+ P G+G+V F DA+ AL+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 225 NGGDLIGRPVRL 260 N + G+P RL Sbjct: 80 NFDLINGKPFRL 91
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.3 bits (103), Expect = 7e-05 Identities = 25/77 (32%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ NL I +++K+ F+ G + ++ E G KGFG V F+S E+A KA+D +N Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + L R Sbjct: 363 GRIVGSKPLHVTLGQAR 379 Score = 43.9 bits (102), Expect = 9e-05 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAED 200 + +AT T +++ N+ +I+ +++K+ F + G V++ G KGFG V + + E Sbjct: 193 RDRATFTN-VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEA 251 Query: 201 AQKALDALNGGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDS 371 AQKA+ L+G + G+ + R ER A R + +++K D Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDE 311 Query: 372 SQQEDAIR 395 + ++ ++ Sbjct: 312 TINDEKLK 319 Score = 37.4 bits (85), Expect = 0.009 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ ++G KG+ +V F S A +A Sbjct: 103 SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRA 161 Query: 213 LDALNGGDLIGRPV---RLDLAAERGASALRTRD 305 + +NG L R V R ER A+ +RTRD Sbjct: 162 IWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRD 194 Score = 33.9 bits (76), Expect = 0.096 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++G+L ++ D + + F G + R+ P G+G+V F DA+ AL+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 225 NGGDLIGRPVRL 260 N + G+P RL Sbjct: 80 NFDLINGKPFRL 91
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.3 bits (103), Expect = 7e-05 Identities = 25/77 (32%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ NL I +++K+ F+ G + ++ E G KGFG V F+S E+A KA+D +N Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + L R Sbjct: 363 GRIVGSKPLHVTLGQAR 379 Score = 43.9 bits (102), Expect = 9e-05 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAED 200 + +AT T +++ N+ +I+ +++K+ F + G V++ G KGFG V + + E Sbjct: 193 RDRATFTN-VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEA 251 Query: 201 AQKALDALNGGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDS 371 AQKA+ L+G + G+ + R ER A R + +++K D Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDE 311 Query: 372 SQQEDAIR 395 + ++ ++ Sbjct: 312 TINDEKLK 319 Score = 37.4 bits (85), Expect = 0.009 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ ++G KG+ +V F S A +A Sbjct: 103 SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRA 161 Query: 213 LDALNGGDLIGRPV---RLDLAAERGASALRTRD 305 + +NG L R V R ER A+ +RTRD Sbjct: 162 IWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRD 194 Score = 33.9 bits (76), Expect = 0.096 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++G+L ++ D + + F G + R+ P G+G+V F DA+ AL+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 225 NGGDLIGRPVRL 260 N + G+P RL Sbjct: 80 NFDLINGKPFRL 91
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.3 bits (103), Expect = 7e-05 Identities = 25/77 (32%), Positives = 44/77 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++ NL I +++K+ F+ G + ++ E G KGFG V F+S E+A KA+D +N Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 228 GGDLIGRPVRLDLAAER 278 G + +P+ + L R Sbjct: 363 GRIVGSKPLHVTLGQAR 379 Score = 43.9 bits (102), Expect = 9e-05 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAED 200 + +AT T +++ N+ +I+ +++K+ F + G V++ G KGFG V + + E Sbjct: 193 RDRATFTN-VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEA 251 Query: 201 AQKALDALNGGDLIGRPV---RLDLAAERGASALRTRDXXXXXXXXXXXXXXVFVKGFDS 371 AQKA+ L+G + G+ + R ER A R + +++K D Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDE 311 Query: 372 SQQEDAIR 395 + ++ ++ Sbjct: 312 TINDEKLK 319 Score = 37.4 bits (85), Expect = 0.009 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 +G +++ NL +I+ + F+ G ++ ++ ++G KG+ +V F S A +A Sbjct: 103 SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRA 161 Query: 213 LDALNGGDLIGRPV---RLDLAAERGASALRTRD 305 + +NG L R V R ER A+ +RTRD Sbjct: 162 IWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRD 194 Score = 33.9 bits (76), Expect = 0.096 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++G+L ++ D + + F G + R+ P G+G+V F DA+ AL+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 225 NGGDLIGRPVRL 260 N + G+P RL Sbjct: 80 NFDLINGKPFRL 91
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 44.3 bits (103), Expect = 7e-05 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Frame = +3 Query: 18 NKGQATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFAS 191 + G +KT L + L N+ +++K F IGE+ +L + G G+G V + Sbjct: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 192 AEDAQKALDALNGGDLIGRPVRLDLAAERGAS 287 +DA+KA++ LNG L + +++ A AS Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDAQKALDAL 224 +++ NL+ + + + Q F G V +V++ + + KGFG V + ++A A+ +L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 225 NGGDLIGRPVRLDLAAER 278 NG L R +++ + Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 44.3 bits (103), Expect = 7e-05 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Frame = +3 Query: 18 NKGQATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFAS 191 + G +KT L + L N+ +++K F IGE+ +L + G G+G V + Sbjct: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 192 AEDAQKALDALNGGDLIGRPVRLDLAAERGAS 287 +DA+KA++ LNG L + +++ A AS Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDAQKALDAL 224 +++ NL+ + + + Q F G V +V++ + + KGFG V + ++A A+ +L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 225 NGGDLIGRPVRLDLAAER 278 NG L R +++ + Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 44.3 bits (103), Expect = 7e-05 Identities = 18/59 (30%), Positives = 36/59 (61%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 T+++G + ++ +++ FFA+ G V +V++ T G KG+G V F + D QK +++ Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVES 99
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 43.5 bits (101), Expect = 1e-04 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 9/101 (8%) Frame = +3 Query: 3 KTPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVD--------VRLATHED-G 155 +T A ++ + T+++ L + DQV +FF QIG + + L T +D G Sbjct: 221 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 280 Query: 156 HPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAER 278 PKG V F A+ A+D +G + G +++ A R Sbjct: 281 KPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRR 321
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/59 (30%), Positives = 36/59 (61%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 T+++G + ++ +++ FFA+ G V +V++ T G KG+G V F + D QK +++ Sbjct: 41 TVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVES 99
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 43.5 bits (101), Expect = 1e-04 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDAL 224 +++ NL N+ DQV + G+++ +L + DG KGF EF + DA+ A+ L Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371 Query: 225 NGGDLIGRPVRLDLA 269 +G D G + A Sbjct: 372 DGKDTYGNKLHAQFA 386
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 43.5 bits (101), Expect = 1e-04 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKAL 215 TK L++ NL+++ D +K F G++ V + + +PKGF +++F A+DA +A Sbjct: 322 TKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAY 381 Query: 216 DALNGGDLIGRPVRLDLAAERGASAL 293 L+ GR + + A R + L Sbjct: 382 LELDAKPFQGRLLHVLPAKARSSILL 407 Score = 41.2 bits (95), Expect = 6e-04 Identities = 26/79 (32%), Positives = 38/79 (48%) Frame = +3 Query: 36 GTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 GTK L + NL F V+ G++ VR+ D +GF EF +A +A A+ Sbjct: 720 GTKIL-IKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAM 778 Query: 216 DALNGGDLIGRPVRLDLAA 272 AL L+GR + L A+ Sbjct: 779 RALKNTHLLGRHLVLQYAS 797 Score = 35.4 bits (80), Expect = 0.033 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Frame = +3 Query: 27 QATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK--------GFGHVE 182 ++ T T+++ NL+F+ + ++ ++ F + + + D PK GFG VE Sbjct: 614 ESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPD--PKRPGKYLSMGFGFVE 671 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALRTR 302 F A A+ A+NG L G + + L+ + +A R Sbjct: 672 FKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVR 711
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 43.1 bits (100), Expect = 2e-04 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 3/89 (3%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAED 200 G++ L++ NL I D++++ F + G +V + + G P+G V F E+ Sbjct: 182 GESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREE 241 Query: 201 AQKALDALNG--GDLIGRPVRLDLAAERG 281 AQ+A+ ALN + +P+ + LA E G Sbjct: 242 AQEAISALNNVIPEGASQPLTVRLAEEHG 270 Score = 31.2 bits (69), Expect = 0.62 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Frame = +3 Query: 27 QATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDA 203 QA L + L ++ ++ F G + R+ ++ G+ G+ V+FAS DA Sbjct: 97 QAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDA 156 Query: 204 QKALDALNGGDLIGRPVRLDLAAERGAS 287 Q A+ +NG + + +++ A G S Sbjct: 157 QNAIKTVNGITVRNKRLKVSYARPGGES 184
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 43.1 bits (100), Expect = 2e-04 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Frame = +3 Query: 24 GQATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAE 197 G +KT L + L N+ D+ K F IG++ +L + G G+G V ++ Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAERGAS 287 DA KA++ LNG L + +++ A AS Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYARPSSAS 121 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVR-LATHEDGHPKGFGHVEFASAED 200 G A +++ NLS + + Q F G V +V+ + KGFG V + ++ Sbjct: 278 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 337 Query: 201 AQKALDALNG 230 A A+ +LNG Sbjct: 338 AAMAIASLNG 347
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 43.1 bits (100), Expect = 2e-04 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Frame = +3 Query: 24 GQATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAE 197 G +KT L + L N+ D+ K F IG++ +L + G G+G V ++ Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAERGAS 287 DA KA++ LNG L + +++ A AS Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYARPSSAS 121 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVR-LATHEDGHPKGFGHVEFASAED 200 G A +++ NLS + + Q F G V +V+ + KGFG V + ++ Sbjct: 278 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 337 Query: 201 AQKALDALNG 230 A A+ +LNG Sbjct: 338 AAMAIASLNG 347
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 43.1 bits (100), Expect = 2e-04 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVR-LATHEDGHPKGFGHVEFASAED 200 G+ L++ NLS +I +Q++ F + G++V L G P+G + F E+ Sbjct: 158 GEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREE 217 Query: 201 AQKALDALN-----GGDLIGRPVRLDLAAERGAS 287 AQ+A+ ALN GG +P+ + +A E G S Sbjct: 218 AQEAISALNNVIPEGGT---QPLTVRVAEEHGKS 248 Score = 36.6 bits (83), Expect = 0.015 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Frame = +3 Query: 6 TPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVE 182 T + N G L + L +++ ++ F IG + R+ ++ G+ G+G V+ Sbjct: 66 TNSLNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVD 125 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAERG 281 F S DA +A++ LNG + + +++ A G Sbjct: 126 FGSEADALRAINNLNGITVRNKRIKVSFARPGG 158
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/74 (29%), Positives = 39/74 (52%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++GNL ++ + + Q F++ +V ++ +G +GFG V F ++ KA N Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91 Query: 228 GGDLIGRPVRLDLA 269 G + RPV+L A Sbjct: 92 GKYIGSRPVKLSRA 105
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Frame = +3 Query: 54 MGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP---KGFGHVEFASAEDAQKALDAL 224 +G L+ N+ D + + F+ G++ + + E HP KG+ +VEF + ++A+KAL + Sbjct: 165 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPV-ERMHPHLSKGYAYVEFENPDEAEKALKHM 223 Query: 225 NGGDLIGRPV 254 +GG + G+ + Sbjct: 224 DGGQIDGQEI 233
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Frame = +3 Query: 54 MGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP---KGFGHVEFASAEDAQKALDAL 224 +G L+ N+ D + + F+ G++ + + E HP KG+ +VEF + ++A+KAL + Sbjct: 165 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPV-ERMHPHLSKGYAYVEFENPDEAEKALKHM 223 Query: 225 NGGDLIGRPV 254 +GG + G+ + Sbjct: 224 DGGQIDGQEI 233
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Frame = +3 Query: 54 MGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP---KGFGHVEFASAEDAQKALDAL 224 +G L+ N+ D + + F+ G++ + + E HP KG+ +VEF + ++A+KAL + Sbjct: 165 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPV-ERMHPHLSKGYAYVEFENPDEAEKALKHM 223 Query: 225 NGGDLIGRPV 254 +GG + G+ + Sbjct: 224 DGGQIDGQEI 233
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Frame = +3 Query: 54 MGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP---KGFGHVEFASAEDAQKALDAL 224 +G L+ N+ D + + F+ G++ + + E HP KG+ +VEF + ++A+KAL + Sbjct: 165 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPV-ERMHPHLSKGYAYVEFENPDEAEKALKHM 223 Query: 225 NGGDLIGRPV 254 +GG + G+ + Sbjct: 224 DGGQIDGQEI 233
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Frame = +3 Query: 54 MGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP---KGFGHVEFASAEDAQKALDAL 224 +G L+ N+ D + + F+ G++ + + E HP KG+ +VEF + ++A+KAL + Sbjct: 165 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPV-ERMHPHLSKGYAYVEFENPDEAEKALKHM 223 Query: 225 NGGDLIGRPV 254 +GG + G+ + Sbjct: 224 DGGQIDGQEI 233
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 42.7 bits (99), Expect = 2e-04 Identities = 20/84 (23%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRL-ATHEDGHPKGFGHVEFASAEDAQKALDAL 224 L++ ++ + D++++ F GE+ ++ L G KG+ VE+ + + A A +AL Sbjct: 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 Query: 225 NGGDLIGRPVRLDLAAERGASALR 296 NG +++G+ +++D +G ++ Sbjct: 135 NGAEIMGQTIQVDWCFVKGPKRVK 158
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 42.7 bits (99), Expect = 2e-04 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDA 221 T+++G L + + + Q G VV V + + +GFG VEF EDA A+ Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73 Query: 222 LNGGDLIGRPVRLDLAA 272 LN L G+P++++ A+ Sbjct: 74 LNMIKLYGKPIKVNKAS 90 Score = 42.4 bits (98), Expect = 3e-04 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%) Frame = +3 Query: 3 KTPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVR--LATHEDGHPKGFGH 176 K A K G +++GNL ++ + F+ G ++ V + + G KGF Sbjct: 88 KASAHEKNMDVGAN-IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAF 146 Query: 177 VEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGASALR 296 + FAS E + AL+A+NG L R + + A +R + R Sbjct: 147 INFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGER 186
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 42.7 bits (99), Expect = 2e-04 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 3/89 (3%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAED 200 G++ L++ NL I D++++ F + G +V + + G P+G V F E+ Sbjct: 165 GESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREE 224 Query: 201 AQKALDALNG--GDLIGRPVRLDLAAERG 281 AQ+A+ ALN + +P+ + LA E G Sbjct: 225 AQEAISALNNVIPEGASQPLTVRLAEEHG 253 Score = 32.7 bits (73), Expect = 0.21 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +3 Query: 144 HEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGAS 287 ++ G+ G+ V+FAS DAQ A+ +LNG + + +++ A G S Sbjct: 120 YKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGES 167
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L++ ++ ++ D+++Q F++ G V VR+ +GFG + F++ E+A A+D L Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 225 NGGDLIGRPVRLDLA 269 N + GR + + A Sbjct: 163 NSQEFYGRVLNVQKA 177
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP--KGFGHVEFASAEDAQKALDALNGG 233 NLS + +K + Q GEV T+ D H K G +EF S D ++AL+ L+G Sbjct: 110 NLSSRCSWQDLKDYMRQAGEV------TYADAHKGRKNEGVIEFVSYSDMKRALEKLDGT 163 Query: 234 DLIGRPVRL 260 ++ GR +RL Sbjct: 164 EVNGRKIRL 172 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/74 (33%), Positives = 39/74 (52%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++G LS+ V++FF G++++V L G+G VEF DA A+ LN Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKN-------GYGFVEFDDLRDADDAVYELN 56 Query: 228 GGDLIGRPVRLDLA 269 G DL G V ++ A Sbjct: 57 GKDLCGERVIVEHA 70
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP--KGFGHVEFASAEDAQKALDALNGG 233 NLS + +K + Q GEV T+ D H K G +EF S D ++AL+ L+G Sbjct: 110 NLSSRCSWQDLKDYMRQAGEV------TYADAHKGRKNEGVIEFVSYSDMKRALEKLDGT 163 Query: 234 DLIGRPVRL 260 ++ GR +RL Sbjct: 164 EVNGRKIRL 172 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/74 (33%), Positives = 39/74 (52%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++G LS+ V++FF G++++V L G+G VEF DA A+ LN Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKN-------GYGFVEFDDLRDADDAVYELN 56 Query: 228 GGDLIGRPVRLDLA 269 G DL G V ++ A Sbjct: 57 GKDLCGERVIVEHA 70
>YRA1_YEAST (Q12159) RNA annealing protein YRA1| Length = 226 Score = 42.0 bits (97), Expect = 4e-04 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Frame = +3 Query: 72 NIEYDQVKQFFA-QIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGR 248 +I+ D V++FFA Q+G V V L+ +E G G ++ F + E A++A++ NG + G Sbjct: 88 DIKQDAVREFFASQVGGVQRVLLSYNERGQSTGMANITFKNGELARRAVERFNGSPIDGG 147 Query: 249 PVRLDL 266 RL L Sbjct: 148 RSRLRL 153
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 42.0 bits (97), Expect = 4e-04 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP--KGFGHVEFASAEDAQKA 212 T + + N+ F ++++ F+ GE+ VRL G +GFG V+F + +DA+KA Sbjct: 823 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 882 Query: 213 LDAL-NGGDLIGRPVRLDLA 269 +AL + L GR + L+ A Sbjct: 883 FNALCHSTHLYGRRLVLEWA 902 Score = 39.7 bits (91), Expect = 0.002 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGH----PKGFGHVEFASAEDAQKA 212 TL++ NL+F+ + +K F+++G + ++ ++ GFG VE+ E AQKA Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782 Query: 213 LDALNGGDLIGRPVRLDLAAERGASAL 293 L L G + G + + ++ AL Sbjct: 783 LKQLQGHTVDGHKLEVRISERATKPAL 809
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 42.0 bits (97), Expect = 4e-04 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 9/96 (9%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK-GFGHVEFASAEDAQKALDA 221 TL++GNLSF +Q+ + F++ G++ + + + GF VE+ S DA+ A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 222 LNGGDLIGRPVRLDLAA--------ERGASALRTRD 305 +NG L R +R D A RG S + RD Sbjct: 101 INGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRD 136
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 42.0 bits (97), Expect = 4e-04 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 9/96 (9%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK-GFGHVEFASAEDAQKALDA 221 TL++GNLSF +Q+ + F++ G++ + + + GF VE+ S DA+ A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 222 LNGGDLIGRPVRLDLAA--------ERGASALRTRD 305 +NG L R +R D A RG S + RD Sbjct: 101 INGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRD 136
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 42.0 bits (97), Expect = 4e-04 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 9/96 (9%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK-GFGHVEFASAEDAQKALDA 221 TL++GNLSF +Q+ + F++ G++ + + + GF VE+ S DA+ A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 222 LNGGDLIGRPVRLDLAA--------ERGASALRTRD 305 +NG L R +R D A RG S + RD Sbjct: 101 INGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRD 136
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 41.6 bits (96), Expect = 5e-04 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAED 200 G++ L++ NL I DQ+ F + G +V + + G P+G V + E+ Sbjct: 207 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 266 Query: 201 AQKALDALN-----GGDLIGRPVRLDLAAERG 281 AQ+A+ ALN GG +P+ + LA E G Sbjct: 267 AQEAISALNNVIPEGG---SQPLSVRLAQEHG 295 Score = 32.0 bits (71), Expect = 0.36 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +3 Query: 102 FAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAER 278 F IG + R+ ++ G+ G+ V+F S D+Q+A+ LNG + + +++ A Sbjct: 147 FRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 206 Query: 279 GAS 287 G S Sbjct: 207 GES 209
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 41.6 bits (96), Expect = 5e-04 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAED 200 G++ L++ NL I DQ+ F + G +V + + G P+G V + E+ Sbjct: 205 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 264 Query: 201 AQKALDALN-----GGDLIGRPVRLDLAAERG 281 AQ+A+ ALN GG +P+ + LA E G Sbjct: 265 AQEAISALNNVIPEGG---SQPLSVRLAEEHG 293 Score = 32.0 bits (71), Expect = 0.36 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +3 Query: 102 FAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAER 278 F IG + R+ ++ G+ G+ V+F S D+Q+A+ LNG + + +++ A Sbjct: 145 FRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 204 Query: 279 GAS 287 G S Sbjct: 205 GES 207
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 41.6 bits (96), Expect = 5e-04 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAED 200 G++ L++ NL I DQ+ F + G +V + + G P+G V F E+ Sbjct: 190 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREE 249 Query: 201 AQKALDALNG--GDLIGRPVRLDLAAERG 281 AQ+A+ ALN + +P+ + LA E G Sbjct: 250 AQEAISALNNVIPEGASQPLTVRLAEEHG 278 Score = 33.1 bits (74), Expect = 0.16 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +3 Query: 102 FAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAER 278 F IG + R+ ++ G+ G+ V+FA+ D+Q+A+ +LNG + + +++ A Sbjct: 130 FRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPG 189 Query: 279 GAS 287 G S Sbjct: 190 GES 192
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 41.2 bits (95), Expect = 6e-04 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Frame = +3 Query: 6 TPASNKGQATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHV 179 +P +KT L + L N+ ++ + F IGE+ +L + G G+G V Sbjct: 26 SPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 85 Query: 180 EFASAEDAQKALDALNGGDLIGRPVRLDLAAERGAS 287 + +DA+KA++ LNG L + +++ A AS Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Frame = +3 Query: 33 TGTK-TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDAQ 206 TGT +++ NLS + + + Q F G V +V++ + + KGFG V + ++A Sbjct: 286 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 345 Query: 207 KALDALNGGDLIGRPVRLDLAAER 278 A+ +LNG L R +++ + Sbjct: 346 MAIASLNGYRLGDRVLQVSFKTNK 369
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 41.2 bits (95), Expect = 6e-04 Identities = 24/83 (28%), Positives = 44/83 (53%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL + +++ FA+ G + +V +A + P GF VEF DA+ A AL+ Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARN----PPGFAFVEFEDRRDAEDATRALD 68 Query: 228 GGDLIGRPVRLDLAAERGASALR 296 G G +R+++++ R R Sbjct: 69 GTRCCGTRIRVEMSSGRSRDRRR 91
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 41.2 bits (95), Expect = 6e-04 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Frame = +3 Query: 6 TPASNKGQATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHV 179 +P +KT L + L N+ ++ + F IGE+ +L + G G+G V Sbjct: 33 SPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 92 Query: 180 EFASAEDAQKALDALNGGDLIGRPVRLDLAAERGAS 287 + +DA+KA++ LNG L + +++ A AS Sbjct: 93 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Frame = +3 Query: 33 TGTK-TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDAQ 206 TGT +++ NLS + + + Q F G V +V++ + + KGFG V + ++A Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 352 Query: 207 KALDALNGGDLIGRPVRLDLAAER 278 A+ +LNG L R +++ + Sbjct: 353 MAIASLNGYRLGDRVLQVSFKTNK 376
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 41.2 bits (95), Expect = 6e-04 Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 8/101 (7%) Frame = +3 Query: 6 TPASNKGQATGTKT-------LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHP 161 +P SN+ + TG++ L + LS +++ F++ G + V + + G Sbjct: 100 SPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRS 159 Query: 162 KGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGA 284 +GF V F +D+++A++ NG +L GR +R+D + + A Sbjct: 160 RGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRA 200
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 41.2 bits (95), Expect = 6e-04 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP--KGFGHVEFASAEDAQKA 212 T + + N+ F ++++ F+ GE+ VRL G +GFG V+F + +DA++A Sbjct: 831 TSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890 Query: 213 LDAL-NGGDLIGRPVRLDLA-AERGASALRTR 302 +AL + L GR + L+ A +E ALR + Sbjct: 891 FNALCHSTHLYGRRLVLEWADSEVTLQALRRK 922 Score = 40.8 bits (94), Expect = 8e-04 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGH----PKGFGHVEFASAEDAQKA 212 TL++ NL+F+ +++K+ F+++G V ++ ++ GFG VE+ E AQKA Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790 Query: 213 LDALNGGDLIGRPVRLDLA 269 L L G + G + + ++ Sbjct: 791 LKQLQGHVVDGHKLEVRIS 809 Score = 38.1 bits (87), Expect = 0.005 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 NL ++ ++ +Q FA G + D L +DG + FG + F S E+AQKA N Sbjct: 8 NLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 41.2 bits (95), Expect = 6e-04 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP---KGFGHVEFASAEDAQKAL 215 T ++GNL +++ D +K FF + + VRL E +P KGFG+ EF + AL Sbjct: 97 TAFLGNLPYDVTEDSIKDFFRGL-NISAVRL-PREPSNPDRLKGFGYAEFEDLDSLLSAL 154 Query: 216 DALNGGDLIGRPVRLDLA 269 +LN L R +R+D+A Sbjct: 155 -SLNEESLGNRRIRVDVA 171
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 41.2 bits (95), Expect = 6e-04 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Frame = +3 Query: 6 TPASNKGQATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHV 179 +P +KT L + L N+ ++ + F IGE+ +L + G G+G V Sbjct: 38 SPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 97 Query: 180 EFASAEDAQKALDALNGGDLIGRPVRLDLAAERGAS 287 + +DA+KA++ LNG L + +++ A AS Sbjct: 98 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 133 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Frame = +3 Query: 33 TGTK-TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDAQ 206 TGT +++ NLS + + + Q F G V +V++ + + KGFG V + ++A Sbjct: 298 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 357 Query: 207 KALDALNGGDLIGRPVRLDLAAER 278 A+ +LNG L R +++ + Sbjct: 358 MAIASLNGYRLGDRVLQVSFKTNK 381
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 41.2 bits (95), Expect = 6e-04 Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 8/101 (7%) Frame = +3 Query: 6 TPASNKGQATGTKT-------LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHP 161 +P SN+ + TG++ L + LS +++ F++ G + V + + G Sbjct: 98 SPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRS 157 Query: 162 KGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGA 284 +GF V F +D+++A++ NG +L GR +R+D + + A Sbjct: 158 RGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRA 198
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKALDAL 224 +++ L ++ ++FAQ G++ +VRLA ++ G+ + +G +EF + EDA A +++ Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152 Query: 225 NGGDLIG 245 N L+G Sbjct: 153 NNYLLMG 159
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 40.8 bits (94), Expect = 8e-04 Identities = 24/90 (26%), Positives = 44/90 (48%) Frame = +3 Query: 6 TPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEF 185 T AS+ ++ + + + NL F + + F G++ VR+ D +GF VEF Sbjct: 705 TSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEF 764 Query: 186 ASAEDAQKALDALNGGDLIGRPVRLDLAAE 275 ++A+ A+ L G L+GR + + A + Sbjct: 765 NLMKEAETAMSQLEGVHLLGRRLVMQYAEQ 794 Score = 37.7 bits (86), Expect = 0.007 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKAL 215 T L++ N+S+ + + F+Q G + +V +A G KGF +V+F EDA +A Sbjct: 309 TGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAY 368 Query: 216 DALNGGDLIGR 248 +L+ GR Sbjct: 369 RSLDKQIFQGR 379 Score = 36.2 bits (82), Expect = 0.019 Identities = 14/48 (29%), Positives = 31/48 (64%) Frame = +3 Query: 84 DQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++++FF++ G+V DV+L +G + F + + SA+ A++A+ N Sbjct: 16 EKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFN 63 Score = 34.7 bits (78), Expect = 0.056 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK--------GFGHVEFASA 194 T +++ NL+F + F + V + T D PK GFG VEF + Sbjct: 616 TVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPD--PKNSGKTLSMGFGFVEFRTK 673 Query: 195 EDAQKALDALNGGDLIGRPVRLDLAAERG 281 E A A+ L+G L G ++L L+ ++G Sbjct: 674 EQANVAISTLDGHVLDGHKLQLKLSHKQG 702
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 40.8 bits (94), Expect = 8e-04 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAE 197 KG+++ + W+ LS +K F++ G+VV ++ T+ + +G V ++AE Sbjct: 421 KGRSSCGRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAE 480 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAERGA 284 +A K ++ L+ +L G+ + ++ A A Sbjct: 481 EATKCINHLHKTELHGKMISVEKAKSEPA 509
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 40.4 bits (93), Expect = 0.001 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDALN 227 NL + D+++ F +IG V+ + +A + G PKGF V F S +DA +A+ LN Sbjct: 182 NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELN 238
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 40.4 bits (93), Expect = 0.001 Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAE 197 KG+++ + W+ LS +K F++ G+VV ++ T+ + +G V ++AE Sbjct: 399 KGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAE 458 Query: 198 DAQKALDALNGGDLIGRPVRLDLA 269 +A K ++ L+ +L G+ + ++ A Sbjct: 459 EATKCINHLHKTELHGKMISVEKA 482
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 40.4 bits (93), Expect = 0.001 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVK--QFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 T+++ NL ++IE +VK F GEVV +R G +G+ +VEF + AQ+AL+ Sbjct: 705 TVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQALE 764 Query: 219 ALNGGDLIGRPV 254 L+ + GRP+ Sbjct: 765 -LDRKIVEGRPM 775 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ L F+ ++++ G V D+RL T+ G PKG +VE+ + A +A+ ++ Sbjct: 803 LFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 862 Query: 228 G 230 G Sbjct: 863 G 863
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 40.4 bits (93), Expect = 0.001 Identities = 25/85 (29%), Positives = 44/85 (51%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASA 194 S G+ G +++GNL ++++ F+ G + V +A + P GF VEF Sbjct: 2 SRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDP 57 Query: 195 EDAQKALDALNGGDLIGRPVRLDLA 269 DA+ A+ L+G + G VR++L+ Sbjct: 58 RDAEDAVRGLDGKVICGSRVRVELS 82
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 40.4 bits (93), Expect = 0.001 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP---KGFGHVEFASAEDAQKAL 215 T ++GNL +++ + +K+FF + + VRL E +P KGFG+ EF + AL Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGL-NISAVRL-PREPSNPERLKGFGYAEFEDLDSLLSAL 154 Query: 216 DALNGGDLIGRPVRLDLA 269 +LN L R +R+D+A Sbjct: 155 -SLNEESLGNRRIRVDVA 171
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 40.4 bits (93), Expect = 0.001 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAED 200 GQ L++G+L + Q+K +F Q G+V+ +R++ + + G KG+G VEF E Sbjct: 39 GQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEV 98 Query: 201 AQKALDALN 227 A+ + +N Sbjct: 99 AKIVAETMN 107
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 40.0 bits (92), Expect = 0.001 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDA 221 L++GNL +I+ +++K+FF G VV++R+ T G FG V F +E Q+ L A Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 40.0 bits (92), Expect = 0.001 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDA 221 L++GNL +I+ +++K+FF G VV++R+ T G FG V F +E Q+ L A Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 40.0 bits (92), Expect = 0.001 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDAQKALDAL 224 +++G++SF ++ D ++ F G + + ++ KGF VE+ E AQ AL+ + Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 225 NGGDLIGRPVRL 260 NG + GR +++ Sbjct: 192 NGALMGGRNIKV 203 Score = 34.7 bits (78), Expect = 0.056 Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = +3 Query: 27 QATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVEFASAEDA 203 +A +++ ++ ++ + +K F G ++ +LA H KG+G +E+A+ + Sbjct: 222 EAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAM 281 Query: 204 QKALDALNGGDLIGRPVRL 260 +A+ ++N DL G+ +R+ Sbjct: 282 DEAIASMNLFDLGGQLLRV 300
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 40.0 bits (92), Expect = 0.001 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKALDAL 224 +++GNL+ + + F++ G VDV L+ E+ G +GF ++++ A+D L Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 225 NGGDLIGRPVRLD 263 NG + GR +++D Sbjct: 93 NGFKIGGRALKID 105
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ L F+ +++++ G V D+RL T+ G PKG +VE+ + A +A+ ++ Sbjct: 821 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 880 Query: 228 G 230 G Sbjct: 881 G 881 Score = 33.9 bits (76), Expect = 0.096 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVK--QFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 T+++ NL ++++ K F GEVV +R G +G+ +VEF + A +AL+ Sbjct: 723 TVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRGDFRGYRYVEFKEEKSALQALE 782 Query: 219 ALNGGDLIGRPV 254 ++ + GRP+ Sbjct: 783 -MDRKSVEGRPM 793
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 39.7 bits (91), Expect = 0.002 Identities = 25/81 (30%), Positives = 42/81 (51%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++GNL ++ ++K FF G VV++R+ + G FG V F +E QK L N Sbjct: 340 LFIGNLPHEVDKSELKDFFQNFGNVVELRI--NSGGKLPNFGFVVFDDSEPVQKVLS--N 395 Query: 228 GGDLIGRPVRLDLAAERGASA 290 + VRL++ ++ +A Sbjct: 396 RPIMFRGAVRLNVEEKKTRAA 416
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++ L F+ +++++ G V D+RL T+ G PKG +VE+ + A +A+ ++ Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 862 Query: 228 G 230 G Sbjct: 863 G 863 Score = 33.5 bits (75), Expect = 0.13 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVK--QFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 T+++ NL ++++ K F GEVV +R G +G+ +VEF + A +AL+ Sbjct: 705 TVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALE 764 Query: 219 ALNGGDLIGRPV 254 ++ + GRP+ Sbjct: 765 -MDRKSVEGRPM 775
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Frame = +3 Query: 9 PASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEF 185 P + +A K++++GN+ FN +++++ F G++V + + K F ++EF Sbjct: 90 PTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEF 149 Query: 186 ASAEDAQKALDALNGGDLIGRPV 254 + + AL +NG RP+ Sbjct: 150 DDSSSIENAL-VMNGSLFRSRPI 171
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 39.7 bits (91), Expect = 0.002 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = +3 Query: 33 TGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKA 212 T T+++G LS + +++K F GE+V V++ KG G V+F + + A+ A Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPG-----KGCGFVQFVNRQSAEIA 354 Query: 213 LDALNGGDLIGRPVRL 260 ++ L G L +RL Sbjct: 355 INQLQGYPLGNSRIRL 370 Score = 34.7 bits (78), Expect = 0.056 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Frame = +3 Query: 45 TLWMGNLSFNI-EYDQVKQFFAQIGEVVDVRLATHEDGH-PKGFGHVEFASAEDAQKALD 218 ++++G+LS N+ E+D F ++ ++ T + +G+G V F D + AL Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246 Query: 219 ALNGGDLIGRPVRLDLAAER 278 + G RP+R+ LA + Sbjct: 247 EMQGQICGDRPIRVGLATPK 266
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 102 FAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAER 278 F+ GEV++ ++ E +GFG V F++ E + A++ +NG +L GR + ++ A R Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66 Query: 279 G 281 G Sbjct: 67 G 67
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 39.7 bits (91), Expect = 0.002 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 11/98 (11%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK---GFGHVEFASAEDAQKAL 215 TL++GNLSF +Q+ + F++ G+V R+ D K GF VE+ + DA A+ Sbjct: 33 TLYVGNLSFYTTEEQIHELFSKSGDV--KRIVMGLDKVKKTACGFCFVEYYTRADAGTAM 90 Query: 216 DALNGGDLIGRPVRLDLAA--------ERGASALRTRD 305 +NG L R VR D A RG S + RD Sbjct: 91 RFINGTRLDDRIVRTDWDAGFKEGRQYGRGKSGGQVRD 128
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 39.7 bits (91), Expect = 0.002 Identities = 22/88 (25%), Positives = 43/88 (48%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASA 194 S + T T +++GNL+ +V++ F + G VV+ + + +G V Sbjct: 77 SRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-------RNYGFVHLDCV 129 Query: 195 EDAQKALDALNGGDLIGRPVRLDLAAER 278 D Q A+ LNG + G+P+++ ++ R Sbjct: 130 GDVQDAIKELNGRVVDGQPLKVQVSTSR 157
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 39.3 bits (90), Expect = 0.002 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP--KGFGHVEFASAEDAQKALDALNGG 233 NLS + + +K + Q GEV T+ D H + G VEFAS D + A++ L+ Sbjct: 125 NLSSRVSWQDLKDYMRQAGEV------TYADAHKQRRNEGVVEFASLSDMKTAIEKLDDT 178 Query: 234 DLIGRPVRL 260 +L GR + L Sbjct: 179 ELNGRRIHL 187 Score = 39.3 bits (90), Expect = 0.002 Identities = 25/86 (29%), Positives = 42/86 (48%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++G L + + +++FF G D+ + G+G VEF DA A+ LN Sbjct: 5 VYVGGLPYGVRERDLERFFKGYGRTRDILIKN-------GYGFVEFEDYRDADDAVYELN 57 Query: 228 GGDLIGRPVRLDLAAERGASALRTRD 305 G +L+G V ++ A RG + RD Sbjct: 58 GKELLGERVVVEPA--RGTARGSNRD 81
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 90 VKQFFAQIGEVVDVRLATHEDGH-PKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDL 266 +++ F++ G + DV + + +GF V F + +DA++A + NG +L GR +R+D Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 267 A 269 + Sbjct: 194 S 194
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 90 VKQFFAQIGEVVDVRLATHEDGH-PKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDL 266 +++ F++ G + DV + + +GF V F + +DA++A + NG +L GR +R+D Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 267 A 269 + Sbjct: 194 S 194
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 90 VKQFFAQIGEVVDVRLATHEDGH-PKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDL 266 +++ F++ G + DV + + +GF V F + +DA++A + NG +L GR +R+D Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 267 A 269 + Sbjct: 194 S 194
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 39.3 bits (90), Expect = 0.002 Identities = 25/81 (30%), Positives = 42/81 (51%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++GNL ++ ++K FF G VV++R+ + G FG V F +E QK L N Sbjct: 342 LFIGNLPHEVDKSELKDFFQSYGNVVELRI--NSGGKLPNFGFVVFDDSEPVQKVLS--N 397 Query: 228 GGDLIGRPVRLDLAAERGASA 290 + VRL++ ++ +A Sbjct: 398 RPIMFRGEVRLNVEEKKTRAA 418
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 38.9 bits (89), Expect = 0.003 Identities = 21/82 (25%), Positives = 40/82 (48%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDA 221 KTL++ ++ ++ +Q+ FF+ + + + +GFG V FA +D ++AL Sbjct: 26 KTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAK 85 Query: 222 LNGGDLIGRPVRLDLAAERGAS 287 G +R+D+A R S Sbjct: 86 ARKTKFNGHILRVDIAKRRDRS 107 Score = 32.0 bits (71), Expect = 0.36 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +3 Query: 87 QVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDL 266 ++K+ F + G VV+ + DG GF V + + AL+ + GR V +D Sbjct: 163 KLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDF 222 Query: 267 AAER 278 A ++ Sbjct: 223 AVQK 226
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 38.9 bits (89), Expect = 0.003 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +3 Query: 9 PASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEF 185 P + +A K++++GN+ FN ++V++ F G +V + + K F ++EF Sbjct: 50 PTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEF 109 Query: 186 ASAEDAQKALDALNGGDLIGRPV 254 + + AL +NG RP+ Sbjct: 110 DDSSSIENAL-VMNGSLFRSRPI 131
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 38.9 bits (89), Expect = 0.003 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALD 218 +++++GN+ + ++++ F G V V + + GHPKGF ++EF+ E + +L Sbjct: 167 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL- 225 Query: 219 ALNGGDLIGRPVRL 260 AL+ GR +++ Sbjct: 226 ALDESLFRGRQIKV 239
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 38.9 bits (89), Expect = 0.003 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALD 218 +++++GN+ + ++++ F G V V + + GHPKGF ++EF+ E + +L Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL- 229 Query: 219 ALNGGDLIGRPVRL 260 AL+ GR +++ Sbjct: 230 ALDESLFRGRQIKV 243
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 38.9 bits (89), Expect = 0.003 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +3 Query: 42 KTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALD 218 +++++GN+ + ++++ F G V V + + GHPKGF ++EF+ E + +L Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL- 229 Query: 219 ALNGGDLIGRPVRL 260 AL+ GR +++ Sbjct: 230 ALDESLFRGRQIKV 243
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 38.5 bits (88), Expect = 0.004 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDAL 224 L++G L+ ++ F + G +V+V L E +GF V F S DA+ A + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 225 NGGDLIGRPVRLDLAAE 275 NG L G+ ++++ A + Sbjct: 70 NGKSLDGKAIKVEQATK 86
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 38.5 bits (88), Expect = 0.004 Identities = 23/72 (31%), Positives = 37/72 (51%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL +I V+ F + G + D+ L G P F VEF DA+ A+ A + Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYARD 74 Query: 228 GGDLIGRPVRLD 263 G D G +R++ Sbjct: 75 GYDYDGYRLRVE 86
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 38.1 bits (87), Expect = 0.005 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = +3 Query: 162 KGFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLA 269 +GF VEF EDA A+D +N ++ GR +R+++A Sbjct: 11 RGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 38.1 bits (87), Expect = 0.005 Identities = 18/63 (28%), Positives = 33/63 (52%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 T+ LW+GNL N+ +++ + F + G V V++ V+F + AQKA + Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHN 64 Query: 219 ALN 227 ++N Sbjct: 65 SVN 67 Score = 33.9 bits (76), Expect = 0.096 Identities = 17/64 (26%), Positives = 35/64 (54%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 T+TL++GNL Y ++ F + GE+VD+ + +G P+ + +++ KA+ Sbjct: 437 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDI-KKVNGVPQ-YAFLQYCDIASVCKAIK 494 Query: 219 ALNG 230 ++G Sbjct: 495 KMDG 498
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 38.1 bits (87), Expect = 0.005 Identities = 18/63 (28%), Positives = 33/63 (52%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 T+ LW+GNL N+ +++ + F + G V V++ V+F + AQKA + Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHN 64 Query: 219 ALN 227 ++N Sbjct: 65 SVN 67 Score = 33.9 bits (76), Expect = 0.096 Identities = 17/64 (26%), Positives = 35/64 (54%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALD 218 T+TL++GNL Y ++ F + GE+VD+ + +G P+ + +++ KA+ Sbjct: 438 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDI-KKVNGVPQ-YAFLQYCDIASVCKAIK 495 Query: 219 ALNG 230 ++G Sbjct: 496 KMDG 499
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 38.1 bits (87), Expect = 0.005 Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Frame = +3 Query: 30 ATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAEDAQ 206 A +++G++ + Q++++F+Q G V +RL+ + + G+ KG+ +VEF E A+ Sbjct: 37 AVSPGVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAK 96 Query: 207 KALDALN 227 D +N Sbjct: 97 IVADTMN 103
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 37.7 bits (86), Expect = 0.007 Identities = 19/74 (25%), Positives = 36/74 (48%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 L++G L+ +K F + G + +V L +GF + F + DA+ A +N Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 Query: 228 GGDLIGRPVRLDLA 269 G L G+ ++++ A Sbjct: 70 GKSLHGKAIKVEQA 83
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 37.7 bits (86), Expect = 0.007 Identities = 24/74 (32%), Positives = 39/74 (52%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL N ++++ F G + V +A + P GF VEF DA A+ L+ Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELD 67 Query: 228 GGDLIGRPVRLDLA 269 G L G VR++L+ Sbjct: 68 GRTLCGCRVRVELS 81
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 37.7 bits (86), Expect = 0.007 Identities = 24/74 (32%), Positives = 39/74 (52%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL N ++++ F G + V +A + P GF VEF DA A+ L+ Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELD 67 Query: 228 GGDLIGRPVRLDLA 269 G L G VR++L+ Sbjct: 68 GRTLCGCRVRVELS 81
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 37.4 bits (85), Expect = 0.009 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDA 221 +L++ N++ + + +++ F + G +VDV + P+GF +V+F DA+ AL Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 222 LNGGDLIGRPVRLDLA 269 L+ + GR + + A Sbjct: 71 LDRKWICGRQIEIQFA 86
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 37.4 bits (85), Expect = 0.009 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDA 221 +L++ N++ + + +++ F + G +VDV + P+GF +V+F DA+ AL Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 222 LNGGDLIGRPVRLDLA 269 L+ + GR + + A Sbjct: 71 LDRKWICGRQIEIQFA 86
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 37.4 bits (85), Expect = 0.009 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 15/95 (15%) Frame = +3 Query: 30 ATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED--------------GHPK 164 +T T+T L + L + D+++ F+ +GE+ V+L + G Sbjct: 144 STETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSL 203 Query: 165 GFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLA 269 G+G V + +DA++A++ LNG L + +++ A Sbjct: 204 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 238 Score = 31.2 bits (69), Expect = 0.62 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Frame = +3 Query: 6 TPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVE 182 T AS G G +++ NL+ E + Q F G V V++ + KG+G V Sbjct: 393 TLASGPG---GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVS 449 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAER 278 + ++A A+ ALNG + R +++ + Sbjct: 450 MTNYDEAAMAIRALNGYTMGNRVLQVSFKTNK 481
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 37.4 bits (85), Expect = 0.009 Identities = 22/74 (29%), Positives = 40/74 (54%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL ++++ F+ G + V +A + P GF VEF DA+ A+ L+ Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLD 97 Query: 228 GGDLIGRPVRLDLA 269 G + G VR++L+ Sbjct: 98 GKVICGSRVRVELS 111
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 37.4 bits (85), Expect = 0.009 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 15/95 (15%) Frame = +3 Query: 30 ATGTKT-LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED--------------GHPK 164 +T T+T L + L + D+++ F+ +GE+ V+L + G Sbjct: 180 STETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSL 239 Query: 165 GFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLA 269 G+G V + +DA++A++ LNG L + +++ A Sbjct: 240 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 274 Score = 31.2 bits (69), Expect = 0.62 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Frame = +3 Query: 6 TPASNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHP-KGFGHVE 182 T AS G G +++ NL+ E + Q F G V V++ + KG+G V Sbjct: 429 TLASGPG---GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVS 485 Query: 183 FASAEDAQKALDALNGGDLIGRPVRLDLAAER 278 + ++A A+ ALNG + R +++ + Sbjct: 486 MTNYDEAAMAIRALNGYTMGNRVLQVSFKTNK 517
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 37.4 bits (85), Expect = 0.009 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 7/96 (7%) Frame = +3 Query: 39 TKTLWMGNLSF-NIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 +KTL++ N N +++ F G++V+VR+ + F +++ + EDA +AL Sbjct: 95 SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR-------RNFAFIQYEAQEDATRAL 147 Query: 216 DALNGGDLIGRPVRLDLAAE------RGASALRTRD 305 DA N L+ + + ++ A + G S R RD Sbjct: 148 DATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRD 183
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 37.4 bits (85), Expect = 0.009 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 7/93 (7%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++G L V+ FF G++ DV + GFG V+F DA A+ LN Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMKN-------GFGFVDFQDQRDADDAVHDLN 56 Query: 228 GGDLIGRPVRLDLA-------AERGASALRTRD 305 G +L G V L+ ER S R R+ Sbjct: 57 GKELCGERVILEFPRRKVGYNEERSGSGFRGRE 89
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 37.0 bits (84), Expect = 0.011 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL +I V+ F + G + D+ L G P F VEF DA+ A+ + Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 74 Query: 228 GGDLIGRPVRLD 263 G D G +R++ Sbjct: 75 GYDYDGYRLRVE 86
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 37.0 bits (84), Expect = 0.011 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKALDAL 224 +++G L + + + F+Q GE+V++ L + G KGF + + A+D Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 225 NGGDLIGRPVRLD 263 NG + GR +R+D Sbjct: 98 NGIKIKGRTIRVD 110
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 37.0 bits (84), Expect = 0.011 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL +I ++ F + G + D+ L G P F VEF DA+ A+ + Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 75 Query: 228 GGDLIGRPVRLDL-AAERGA 284 G D G +R++ + RGA Sbjct: 76 GYDYDGYRLRVEFPRSGRGA 95
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 37.0 bits (84), Expect = 0.011 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Frame = +3 Query: 24 GQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRL------ATHEDGHPKGFGHVEF 185 G+ TK L + NL F V++ F+ G++ +RL + +GF +EF Sbjct: 635 GKTKSTKVL-VKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEF 693 Query: 186 ASAEDAQKALDALNGGDLIGRPVRLDLAAE 275 + +A +A++AL L+GR + L A E Sbjct: 694 TTHTEAARAMEALKHTHLLGRHLVLQWANE 723 Score = 32.7 bits (73), Expect = 0.21 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = +3 Query: 39 TKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKAL 215 T L++ NL+F + + F+ G + + L + G P G ++F +AEDA A Sbjct: 220 TSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAY 279 Query: 216 DALNGGDLIGR 248 AL+ GR Sbjct: 280 KALDKTIFQGR 290 Score = 30.8 bits (68), Expect = 0.81 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = +3 Query: 165 GFGHVEFASAEDAQKALDALNGGDLIGRPVRLDLAAERGA 284 G+G V F + E A KAL AL G ++ G+ + + A+RGA Sbjct: 582 GYGFVGFKTKEAATKALKALEGFEIDGKSLEVKF-AQRGA 620
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 37.0 bits (84), Expect = 0.011 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = +3 Query: 21 KGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLA-THEDGHPKGFGHVEFASAE 197 K A +++G++ ++ Q++++F Q G V +RL+ + + G+ KG+ +VE+ E Sbjct: 34 KANALTPGVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDE 93 Query: 198 DAQKALDALN 227 A+ D +N Sbjct: 94 VAKIVADTMN 103
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 37.0 bits (84), Expect = 0.011 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATH-EDGHPKGFGHVEFASAEDAQKALDA 221 +L++ N++ + +++ F + G +VDV + P+GF +V+F DA+ AL Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70 Query: 222 LNGGDLIGRPVRLDLA 269 LN + GR + + A Sbjct: 71 LNRKWVCGRQIEIQFA 86
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 37.0 bits (84), Expect = 0.011 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 7/96 (7%) Frame = +3 Query: 39 TKTLWMGNLSF-NIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKAL 215 +KTL++ N N +++ F G++V+VR+ + F +++ + EDA +AL Sbjct: 96 SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIR-------RNFAFIQYEAQEDATRAL 148 Query: 216 DALNGGDLIGRPVRLDLAAE------RGASALRTRD 305 DA N L+ + + ++ A + G S R RD Sbjct: 149 DASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRD 184
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 37.0 bits (84), Expect = 0.011 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHED-GHPKGFGHVEFASAEDAQKALDAL 224 +++G L + + + F+Q GE+V++ L + G KGF + + A+D Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 225 NGGDLIGRPVRLD 263 NG + GR +R+D Sbjct: 98 NGIKIKGRTIRVD 110
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 36.6 bits (83), Expect = 0.015 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL +I ++ F + G + D+ L G P F VEF DA+ A+ + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 74 Query: 228 GGDLIGRPVRLD 263 G D G +R++ Sbjct: 75 GYDYDGYRLRVE 86
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 36.6 bits (83), Expect = 0.015 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL +I ++ F + G + D+ L G P F VEF DA+ A+ + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 74 Query: 228 GGDLIGRPVRLD 263 G D G +R++ Sbjct: 75 GYDYDGYRLRVE 86
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 36.6 bits (83), Expect = 0.015 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL +I ++ F + G + D+ L G P F VEF DA+ A+ + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 74 Query: 228 GGDLIGRPVRLD 263 G D G +R++ Sbjct: 75 GYDYDGYRLRVE 86
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 36.6 bits (83), Expect = 0.015 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL +I ++ F + G + D+ L G P F VEF DA+ A+ + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 74 Query: 228 GGDLIGRPVRLD 263 G D G +R++ Sbjct: 75 GYDYDGYRLRVE 86
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 36.6 bits (83), Expect = 0.015 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVD--------VRLAT-HEDGHPKGFGHVEFASAE 197 T+++ L N+ + V +F QIG + + L T E G KG V F Sbjct: 286 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP 345 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAER 278 A+ A+D +G + G P+++ A R Sbjct: 346 SAKAAIDWFDGKEFSGNPIKVSFATRR 372
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 36.6 bits (83), Expect = 0.015 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVD--------VRLAT-HEDGHPKGFGHVEFASAE 197 T+++ L N+ + V +F QIG + + L T E G KG V F Sbjct: 279 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP 338 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAER 278 A+ A+D +G + G P+++ A R Sbjct: 339 SAKAAIDWFDGKEFSGNPIKVSFATRR 365
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/74 (27%), Positives = 39/74 (52%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++G L + ++++ F + G + V +A P GF VE+ DA+ A+ AL+ Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARR----PPGFAFVEYDDVRDAEDAVRALD 60 Query: 228 GGDLIGRPVRLDLA 269 G + G R++L+ Sbjct: 61 GSRICGVRARVELS 74
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 36.6 bits (83), Expect = 0.015 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Frame = +3 Query: 45 TLWMGNLSFNIEYDQVKQFFAQIGEVVD--------VRLAT-HEDGHPKGFGHVEFASAE 197 T+++ L N+ + V +F QIG + + L T E G KG V F Sbjct: 272 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP 331 Query: 198 DAQKALDALNGGDLIGRPVRLDLAAER 278 A+ A+D +G + G P+++ A R Sbjct: 332 SAKAAIDWFDGKEFSGNPIKVSFATRR 358
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLAT-HEDGHPKGFGHVEFASAEDAQKALDAL 224 L++G L+ ++ F + G +V++ L E +GF V F S DA+ + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69 Query: 225 NGGDLIGRPVRLDLAAE 275 NG L G+ ++++ A + Sbjct: 70 NGKSLDGKAIKVEQATK 86
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 36.2 bits (82), Expect = 0.019 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = +3 Query: 84 DQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALNGGDLIGRPVRLD 263 +++ Q F+ I + V +LA E H GF VE+++AE A++ +G + G V+L Sbjct: 235 EELLQLFSGIHKPVFCQLAQDEGSHGGGFAVVEYSTAEHAEEVQQVADGITIKGSQVQLS 294 Query: 264 LAA 272 A Sbjct: 295 FCA 297 Score = 27.3 bits (59), Expect = 9.0 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHE-DGHPKGFGHVEFASAEDAQKALDAL 224 L + NL + ++ ++ G + L E GH KG+G VE+ + A KA Sbjct: 133 LCITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA---- 188 Query: 225 NGGDLIGRPVRLDLAAERGASAL 293 +L+GR + GASAL Sbjct: 189 -RLELLGR--------QMGASAL 202
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 36.2 bits (82), Expect = 0.019 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Frame = +3 Query: 15 SNKGQATGTKTLWMGNLSFNIEYDQVKQFFAQIGEVVD-VRLATHEDGHPKGFGHVEFAS 191 ++ G+ + L++G L + + +KQ F Q GE+VD V + + +GFG + ++ Sbjct: 8 NDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSR 67 Query: 192 A---EDAQKA 212 A +DAQ A Sbjct: 68 AHMVDDAQNA 77
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 36.2 bits (82), Expect = 0.019 Identities = 20/72 (27%), Positives = 38/72 (52%) Frame = +3 Query: 48 LWMGNLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPKGFGHVEFASAEDAQKALDALN 227 +++GNL ++ +V+ F + G + V + + G F VEF DA+ A+ A + Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAVRARD 67 Query: 228 GGDLIGRPVRLD 263 G + GR +R++ Sbjct: 68 GYEFDGRRIRVE 79
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 36.2 bits (82), Expect = 0.019 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = +3 Query: 60 NLSFNIEYDQVKQFFAQIGEVVDVRLATHEDGHPK--GFGHVEFASAEDAQKALDALNGG 233 NLS ++ + +K + GE T D H + G G VEF++ ED + AL +LNG Sbjct: 104 NLSEDVSWQDLKDVMRKAGE------PTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGE 157 Query: 234 DLIGRPVRL 260 + G+ V L Sbjct: 158 VIKGQAVTL 166
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 35.8 bits (81), Expect = 0.025 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = +3 Query: 63 LSFNIEYDQVKQFFAQIGEVVDVRLATHEDGH-PKGFGHVEFASAEDAQKALDALNGGDL 239 L+ N +V++ F + G + +++ H +GF + F + DA+ A DA G ++ Sbjct: 112 LNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEV 171 Query: 240 IGRPVRLDLAAERGA 284 GR +R+D + + A Sbjct: 172 DGRRIRVDYSITQRA 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,061,306 Number of Sequences: 219361 Number of extensions: 1095513 Number of successful extensions: 3783 Number of sequences better than 10.0: 380 Number of HSP's better than 10.0 without gapping: 3422 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3719 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
