>COBQ_DEIRA (Q9RZU9) Cobyric acid synthase|
          Length = 474

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
 Frame = -2

Query: 322 SIRVLVWLMAASPNRNSVTAERPACAITMPSTA--------R*SSRHE---LMVVSQYTA 176
           ++ V+ WL  A P  + V  E PA  I  PST         R S+  E   L  ++++  
Sbjct: 220 TLGVVPWLNVALPEEDGVAVEAPAAIIPSPSTGFVAIPRLPRVSNLDEFAPLGELARWVT 279

Query: 175 SPPE-CGWMRVRCESSMCTMSPVRWLK 98
           SP E  G   V    S  T + + WL+
Sbjct: 280 SPQELAGARAVILPGSKSTAADLAWLR 306

>PHLN_PSEAE (P15713) Non-hemolytic phospholipase C precursor (EC 3.1.4.3)|
           (PLC-N) (Phosphatidylcholine cholinephosphohydrolase)
           (Phosphatidylcholine-hydrolyzing phospholipase C)
           (PC-PLC)
          Length = 692

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/68 (33%), Positives = 32/68 (47%)
 Frame = -1

Query: 281 PEQRHGGAARVRDHDAFHGAVVLQARADGGLPVHGVAARVRLDAGQVRVLDVHDEPRALA 102
           P +R+   AR R HD+F G     A  D  L VHG    +R+  G +R  D+ +    L 
Sbjct: 536 PPKRYTVGARKRLHDSFQG----DASGDYHLEVHGPNGFLRVFRGNLR-RDLAERKAPLP 590

Query: 101 EVAEQHVP 78
           EV   + P
Sbjct: 591 EVRIDYEP 598

>GID_RHOCA (O68141) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 445

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 335 APGLLHPRLGVAHGRLAEPEQRHG---GAARVRDHDAFHGAVVLQARA 201
           A GLLH  +  A G +     RH    G A   D +AF GAV    RA
Sbjct: 64  AVGLLHWEMRAAGGLIMATADRHALPAGGALAVDREAFSGAVTAALRA 111

>Y115_ADE02 (P03290) Hypothetical protein E-115|
          Length = 115

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/44 (47%), Positives = 22/44 (50%)
 Frame = +1

Query: 190 RPPSARAWRTTAPWKAS*SRTRAAPP*RCSGSARRP*ATPRRGW 321
           RP S      TAP        RAAPP R S + R   ATPRRGW
Sbjct: 40  RPSSTPLKVCTAP--------RAAPPPRASCAPR---ATPRRGW 72

>HIS5_CYAME (Q85FY4) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 206

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 169 PECGWMRVRCESSMCTMSP-VRWLK*PNSTCRMISAGPSLRSFSVCGS 29
           P  GW R+ C++S C  S  V W   PN+    + +   + S   C +
Sbjct: 114 PHMGWNRLECQNSECQNSEWVNWKAWPNAWAYFVHSYGVMASSQACAT 161

>HISZ_GEOSL (P60837) ATP phosphoribosyltransferase regulatory subunit|
          Length = 438

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 260 AARVRDHDAFHGAVVLQARADGGLPVHGVAARVRLDAGQVRVLDVH 123
           A RV  +D    A+   ++    L +HGV+  + +D G+VR LD H
Sbjct: 234 AGRVATNDTSRRALDNISQVLDLLDIHGVSDHLTIDLGEVRGLDYH 279

>CAD22_RAT (Q63315) Cadherin-22 precursor (Pituitary and brain cadherin)|
           (PB-cadherin)
          Length = 813

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -1

Query: 248 RDHDAFHGAVVLQARADGGLPVHGVAARVRLDAGQVRVLDVHDEPRALAEVAEQHVPDD 72
           R+   +H   VL   AD     H   +R  L   ++R+LDV+D P  LA   E  V +D
Sbjct: 456 RETAGWHNITVLAMEADN----HAQLSRASL---RIRILDVNDNPPELATPYEAAVCED 507

>CAD22_MOUSE (Q9WTP5) Cadherin-22 precursor (Pituitary and brain cadherin)|
           (PB-cadherin)
          Length = 813

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -1

Query: 248 RDHDAFHGAVVLQARADGGLPVHGVAARVRLDAGQVRVLDVHDEPRALAEVAEQHVPDD 72
           R+   +H   VL   AD     H   +R  L   ++R+LDV+D P  LA   E  V +D
Sbjct: 456 RETAGWHNITVLAMEADN----HAQLSRASL---RIRILDVNDNPPELATPYEAAVCED 507

>EFG2_TREDE (Q73NV3) Elongation factor G 2 (EF-G 2)|
          Length = 695

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 42  LKLRSEGPAEIIRHVLFGYFSQRTGLIV-HIEDSHLTRIQPHSGGDAVYWETTISSCLED 218
           +K+  EGP E   ++ FG  +QR G+I+   ED + TR+        ++  +TI      
Sbjct: 601 MKVSIEGPQEFQGNI-FGLINQRRGIIISSTEDDNFTRVDAEVPLSEMFGFSTILRSSTQ 659

Query: 219 YRAVEGIVIAHAGRSAVTL 275
            +A   +  A  G++  ++
Sbjct: 660 GKAEYSMEFAKYGKAPASI 678

>CAD22_HUMAN (Q9UJ99) Cadherin-22 precursor (Pituitary and brain cadherin)|
           (PB-cadherin)
          Length = 828

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -1

Query: 248 RDHDAFHGAVVLQARADGGLPVHGVAARVRLDAGQVRVLDVHDEPRALAEVAEQHVPDD 72
           R+   +H   VL   AD     H   +R  L   ++R+LDV+D P  LA   E  V +D
Sbjct: 459 RETAGWHNITVLAMEADN----HAQLSRASL---RIRILDVNDNPPELATPYEAAVCED 510

>PDXS_THETN (Q8RBJ3) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)|
          Length = 292

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 299 HGRLAEPEQRHGGAARVRDHDAFHGAVVLQARADGGLPVHGVAARV---RLDAGQVRVLD 129
           HG+L       GG A   D      A+++Q  ADG     G+       ++ A  V+ + 
Sbjct: 200 HGKLPVVNFAAGGIATPAD-----AALMMQLGADGVFVGSGIFKSQNPEKMAAAIVKAVT 254

Query: 128 VHDEPRALAEVAE 90
            +D+P  LAEV+E
Sbjct: 255 YYDKPEILAEVSE 267

>MURE_CHLMU (Q9PKC6) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 483

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -1

Query: 311 LGVAHGRLAEPEQRHGGAARVR-DHDAFHGA----VVLQARADGGLPVHGVA 171
           +G+A GR+ E E   G    V  DH  FHG+    VV + +    LP HGVA
Sbjct: 180 IGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLPEHGVA 231

>DPHB_ARCFU (O29866) Probable diphthine synthase (EC 2.1.1.98) (Diphthamide|
           biosynthesis methyltransferase)
          Length = 251

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 188 PVHGVAARVRLDAGQVRVLDVHDEPRALAEVAEQHVPDD 72
           PV+ + A   +DA  +  LD+H EP  +    E  + +D
Sbjct: 142 PVNVIKANRSIDAHTLLFLDLHPEPMTIGHAVENLIAED 180

>PDXS_TREDE (Q73QI7) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)|
          Length = 282

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -1

Query: 299 HGRLAEPEQRHGGAARVRDHDAFHGAVVLQARADGGLPVHGVAAR---VRLDAGQVRVLD 129
           HG+L  P    GG A   D      A+++   ADG     G+       +  A  V+ + 
Sbjct: 192 HGKLPVPNFSAGGVATPAD-----AALMVHLGADGVFVGSGIFKSGDPAKRAAAIVKAVK 246

Query: 128 VHDEPRALAEVAEQHVP 78
            +D P  LAEV+E   P
Sbjct: 247 NYDNPAILAEVSENLGP 263

>COQ9_DROME (Q8MKN0) Ubiquinone biosynthesis protein COQ9, mitochondrial|
           precursor
          Length = 326

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 78  RHVLFGYFSQRTGLIVHIEDSHLTRIQPHSGGDAVYWE 191
           R V FG++++R GL   ++ + L  +Q  S G A  WE
Sbjct: 241 RSVDFGWYTRRVGLATIMKMTELYFLQDKSPGHAQTWE 278

>MURA_THEFY (Q47KH3) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC|
           2.5.1.7) (Enoylpyruvate transferase)
           (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT)
          Length = 431

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 254 RVRDHDAFHGAVVLQARADGGLPVHGVAARVRLDAGQVRVLDVHDEPRALAEVAE 90
           RVR   A HG   +Q   +  LP+ G A         +R + V ++ R   E+AE
Sbjct: 8   RVRGGHALHGTAFIQGAKNAVLPMIGAALLASKGRTVLRNVPVIEDVRRALELAE 62

>BAP1_HUMAN (Q92560) Ubiquitin carboxyl-terminal hydrolase BAP1 (EC 3.4.19.12)|
           (BRCA1-associated protein 1) (Cerebral protein 6)
          Length = 729

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = -1

Query: 317 PRLGVAHGRLAEPEQRH-----GGAARVRDHDAFH 228
           P L  AH   A PE RH      G + VR  +AFH
Sbjct: 135 PELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFH 169

>BAP1_MOUSE (Q99PU7) Ubiquitin carboxyl-terminal hydrolase BAP1 (EC 3.4.19.12)|
           (BRCA1-associated protein 1) (Ubiquitin C-terminal
           hydrolase X4) (UCH-X4)
          Length = 728

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = -1

Query: 317 PRLGVAHGRLAEPEQRH-----GGAARVRDHDAFH 228
           P L  AH   A PE RH      G + VR  +AFH
Sbjct: 135 PELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFH 169

>VLDLR_CHICK (P98165) Very low-density lipoprotein receptor precursor (VLDL|
           receptor) (VLDL-R) (Vitellogenin receptor) (VTG
           receptor)
          Length = 863

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 175 SPPECGWMRVRCESSMCTMSPVRWLK*PNSTC 80
           +PP CG    +C+SS C   P+ W+   ++ C
Sbjct: 207 APPTCGVHEFQCKSSTCI--PISWVCDDDADC 236

>PGP_PYRHO (O50129) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 231

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 12  ILKLSADPQTLKLRSEGPAEIIRHVL--FGY 98
           ILK +AD  T K   EG AE I H+L  FGY
Sbjct: 200 ILKENADYVTKKEYGEGGAEAIYHILEKFGY 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,204,531
Number of Sequences: 219361
Number of extensions: 749802
Number of successful extensions: 2581
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2581
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)