ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast71g03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478962.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1557 Score = 474 bits (239), Expect = e-131 Identities = 311/335 (92%) Strand = Plus / Plus Query: 1 aggactgcttcatcctgaagctgtcggcggatccgcagacgctgaagctgcggagcgagg 60 |||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||| Sbjct: 977 aggactgcttcatcctcaagctgtcggccgacccgcagacgctgaagcagcggagcgagg 1036 Query: 61 ggccggcggagatcatccggcacgtgctgttcggctacttcagccagcgcacggggctca 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||| || || | Sbjct: 1037 ggccggcggagatcatccggcacgtcctgttcggctacttcagccagcgcaccggcctga 1096 Query: 121 tcgtgcacatcgaggactcgcacctgacccgcatccagccgcactcgggcggcgacgccg 180 ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 1097 tcgtgcacatcgaggactcccacctcacccgcatccagccgcactccggcggcgacgccg 1156 Query: 181 tgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgtggaaggcatcg 240 | ||||||||||||||||||||||| ||||||||||||||| |||| || |||||| Sbjct: 1157 tctactgggagaccaccatcagctccgcgctggaggactaccgccccgtcgagggcatca 1216 Query: 241 tgatcgcgcacgcgggccgctccgccgtgacgctgttccggttcggcgaggcggccatga 300 |||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 1217 tgatcgcgcacgcggggcgctccgccgtcacgctgttccgcttcggcgaggccgccatga 1276 Query: 301 gccacaccaagacgcggatggaggaggcctggagc 335 ||||||||||||||||||||||||||||||||||| Sbjct: 1277 gccacaccaagacgcggatggaggaggcctggagc 1311
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 474 bits (239), Expect = e-131 Identities = 311/335 (92%) Strand = Plus / Minus Query: 1 aggactgcttcatcctgaagctgtcggcggatccgcagacgctgaagctgcggagcgagg 60 |||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||| Sbjct: 24034743 aggactgcttcatcctcaagctgtcggccgacccgcagacgctgaagcagcggagcgagg 24034684 Query: 61 ggccggcggagatcatccggcacgtgctgttcggctacttcagccagcgcacggggctca 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||| || || | Sbjct: 24034683 ggccggcggagatcatccggcacgtcctgttcggctacttcagccagcgcaccggcctga 24034624 Query: 121 tcgtgcacatcgaggactcgcacctgacccgcatccagccgcactcgggcggcgacgccg 180 ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 24034623 tcgtgcacatcgaggactcccacctcacccgcatccagccgcactccggcggcgacgccg 24034564 Query: 181 tgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgtggaaggcatcg 240 | ||||||||||||||||||||||| ||||||||||||||| |||| || |||||| Sbjct: 24034563 tctactgggagaccaccatcagctccgcgctggaggactaccgccccgtcgagggcatca 24034504 Query: 241 tgatcgcgcacgcgggccgctccgccgtgacgctgttccggttcggcgaggcggccatga 300 |||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 24034503 tgatcgcgcacgcggggcgctccgccgtcacgctgttccgcttcggcgaggccgccatga 24034444 Query: 301 gccacaccaagacgcggatggaggaggcctggagc 335 ||||||||||||||||||||||||||||||||||| Sbjct: 24034443 gccacaccaagacgcggatggaggaggcctggagc 24034409
>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1174_G05 Length = 111202 Score = 474 bits (239), Expect = e-131 Identities = 311/335 (92%) Strand = Plus / Minus Query: 1 aggactgcttcatcctgaagctgtcggcggatccgcagacgctgaagctgcggagcgagg 60 |||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||| Sbjct: 76351 aggactgcttcatcctcaagctgtcggccgacccgcagacgctgaagcagcggagcgagg 76292 Query: 61 ggccggcggagatcatccggcacgtgctgttcggctacttcagccagcgcacggggctca 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||| || || | Sbjct: 76291 ggccggcggagatcatccggcacgtcctgttcggctacttcagccagcgcaccggcctga 76232 Query: 121 tcgtgcacatcgaggactcgcacctgacccgcatccagccgcactcgggcggcgacgccg 180 ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 76231 tcgtgcacatcgaggactcccacctcacccgcatccagccgcactccggcggcgacgccg 76172 Query: 181 tgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgtggaaggcatcg 240 | ||||||||||||||||||||||| ||||||||||||||| |||| || |||||| Sbjct: 76171 tctactgggagaccaccatcagctccgcgctggaggactaccgccccgtcgagggcatca 76112 Query: 241 tgatcgcgcacgcgggccgctccgccgtgacgctgttccggttcggcgaggcggccatga 300 |||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct: 76111 tgatcgcgcacgcggggcgctccgccgtcacgctgttccgcttcggcgaggccgccatga 76052 Query: 301 gccacaccaagacgcggatggaggaggcctggagc 335 ||||||||||||||||||||||||||||||||||| Sbjct: 76051 gccacaccaagacgcggatggaggaggcctggagc 76017
>gb|BT017174.1| Zea mays clone EL01N0369A06.c mRNA sequence Length = 1117 Score = 131 bits (66), Expect = 2e-27 Identities = 132/154 (85%) Strand = Plus / Minus Query: 174 gacgccgtgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgtggaa 233 ||||| || ||||||||||||||||||||||||| | |||||||||||||| | ||||| Sbjct: 776 gacgcggtctactgggagaccaccatcagctcgtccatggaggactaccgcccagtggac 717 Query: 234 ggcatcgtgatcgcgcacgcgggccgctccgccgtgacgctgttccggttcggcgaggcg 293 || || ||| | ||||| | || ||||| |||||||| ||||||||||| || |||| Sbjct: 716 ggtatagtggtggcgcattccgggcgctcggccgtgaccctgttccggtttggtgaggtt 657 Query: 294 gccatgagccacaccaagacgcggatggaggagg 327 |||||||||||||||||||| ||||||||||||| Sbjct: 656 gccatgagccacaccaagacccggatggaggagg 623
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 107 bits (54), Expect = 2e-20 Identities = 135/162 (83%) Strand = Plus / Minus Query: 174 gacgccgtgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgtggaa 233 ||||| || ||||||||||||||||||| |||| | | |||||||||||| | ||||| Sbjct: 24121874 gacgcagtttactgggagaccaccatcaattcgttcattgaggactaccgcccggtggag 24121815 Query: 234 ggcatcgtgatcgcgcacgcgggccgctccgccgtgacgctgttccggttcggcgaggcg 293 || || || | |||||||| || |||||||| ||||| || ||||| ||||| |||| Sbjct: 24121814 ggtataatggttgcgcacgctggtcgctccgctgtgaccctcttccgtttcggagaggtt 24121755 Query: 294 gccatgagccacaccaagacgcggatggaggaggcctggagc 335 |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 24121754 gccatgagccacaccaagactcgcatggaggaggcatggagc 24121713 Score = 61.9 bits (31), Expect = 1e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 1 aggactgcttcatcctgaagctgtcggcggatccgcagacgctgaagctgcggagcgagg 60 |||| ||||||||||||||||||| ||||| || ||||||| | | ||| ||||||| Sbjct: 24122047 aggattgcttcatcctgaagctgtgcgcggaccctgagacgctaagggcgcgcagcgagg 24121988 Query: 61 ggccggcggagatcatccggcacgtgctgttcggctacttcagccag 107 ||| ||||||||||||||||| || || || || || ||||||||| Sbjct: 24121987 ggcttgcggagatcatccggcatgttctctttgggtatttcagccag 24121941
>dbj|AK059252.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H04, full insert sequence Length = 1146 Score = 107 bits (54), Expect = 2e-20 Identities = 135/162 (83%) Strand = Plus / Plus Query: 174 gacgccgtgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgtggaa 233 ||||| || ||||||||||||||||||| |||| | | |||||||||||| | ||||| Sbjct: 98 gacgcagtttactgggagaccaccatcaattcgttcattgaggactaccgcccggtggag 157 Query: 234 ggcatcgtgatcgcgcacgcgggccgctccgccgtgacgctgttccggttcggcgaggcg 293 || || || | |||||||| || |||||||| ||||| || ||||| ||||| |||| Sbjct: 158 ggtataatggttgcgcacgctggtcgctccgctgtgaccctcttccgtttcggagaggtt 217 Query: 294 gccatgagccacaccaagacgcggatggaggaggcctggagc 335 |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 218 gccatgagccacaccaagactcgcatggaggaggcatggagc 259
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 107 bits (54), Expect = 2e-20 Identities = 135/162 (83%) Strand = Plus / Minus Query: 174 gacgccgtgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgtggaa 233 ||||| || ||||||||||||||||||| |||| | | |||||||||||| | ||||| Sbjct: 24050080 gacgcagtttactgggagaccaccatcaattcgttcattgaggactaccgcccggtggag 24050021 Query: 234 ggcatcgtgatcgcgcacgcgggccgctccgccgtgacgctgttccggttcggcgaggcg 293 || || || | |||||||| || |||||||| ||||| || ||||| ||||| |||| Sbjct: 24050020 ggtataatggttgcgcacgctggtcgctccgctgtgaccctcttccgtttcggagaggtt 24049961 Query: 294 gccatgagccacaccaagacgcggatggaggaggcctggagc 335 |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 24049960 gccatgagccacaccaagactcgcatggaggaggcatggagc 24049919 Score = 61.9 bits (31), Expect = 1e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 1 aggactgcttcatcctgaagctgtcggcggatccgcagacgctgaagctgcggagcgagg 60 |||| ||||||||||||||||||| ||||| || ||||||| | | ||| ||||||| Sbjct: 24050253 aggattgcttcatcctgaagctgtgcgcggaccctgagacgctaagggcgcgcagcgagg 24050194 Query: 61 ggccggcggagatcatccggcacgtgctgttcggctacttcagccag 107 ||| ||||||||||||||||| || || || || || ||||||||| Sbjct: 24050193 ggcttgcggagatcatccggcatgttctctttgggtatttcagccag 24050147
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 107 bits (54), Expect = 2e-20 Identities = 135/162 (83%) Strand = Plus / Minus Query: 174 gacgccgtgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgtggaa 233 ||||| || ||||||||||||||||||| |||| | | |||||||||||| | ||||| Sbjct: 6565 gacgcagtttactgggagaccaccatcaattcgttcattgaggactaccgcccggtggag 6506 Query: 234 ggcatcgtgatcgcgcacgcgggccgctccgccgtgacgctgttccggttcggcgaggcg 293 || || || | |||||||| || |||||||| ||||| || ||||| ||||| |||| Sbjct: 6505 ggtataatggttgcgcacgctggtcgctccgctgtgaccctcttccgtttcggagaggtt 6446 Query: 294 gccatgagccacaccaagacgcggatggaggaggcctggagc 335 |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 6445 gccatgagccacaccaagactcgcatggaggaggcatggagc 6404 Score = 61.9 bits (31), Expect = 1e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 1 aggactgcttcatcctgaagctgtcggcggatccgcagacgctgaagctgcggagcgagg 60 |||| ||||||||||||||||||| ||||| || ||||||| | | ||| ||||||| Sbjct: 6738 aggattgcttcatcctgaagctgtgcgcggaccctgagacgctaagggcgcgcagcgagg 6679 Query: 61 ggccggcggagatcatccggcacgtgctgttcggctacttcagccag 107 ||| ||||||||||||||||| || || || || || ||||||||| Sbjct: 6678 ggcttgcggagatcatccggcatgttctctttgggtatttcagccag 6632
>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete sequence Length = 157397 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 258 cgctccgccgtgacgctgttccggttcggcgaggcggccatgagccacaccaagacgcgg 317 ||||| || ||||| || ||||| || || |||| ||||||||||||||||||||| || Sbjct: 114951 cgctctgctgtgaccctattccgttttggtgaggtggccatgagccacaccaagactcgt 115010 Query: 318 atggaggaggcctggagc 335 ||||||||||| |||||| Sbjct: 115011 atggaggaggcatggagc 115028
>ref|XM_463110.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1329 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 258 cgctccgccgtgacgctgttccggttcggcgaggcggccatgagccacaccaagacgcgg 317 ||||| || ||||| || ||||| || || |||| ||||||||||||||||||||| || Sbjct: 1030 cgctctgctgtgaccctattccgttttggtgaggtggccatgagccacaccaagactcgt 1089 Query: 318 atggaggaggcctggagc 335 ||||||||||| |||||| Sbjct: 1090 atggaggaggcatggagc 1107
>gb|AC121362.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009N21, complete sequence Length = 164925 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 216 gactaccgcgccgtggaaggcatcgtgatcgcgcacgcgggccgctccgccgtgacgctg 275 |||||||||||||| || |||||| ||||||||||| |||||| |||||||| ||||| Sbjct: 9374 gactaccgcgccgtcgacggcatcaacatcgcgcacgccggccgcaccgccgtgtcgctg 9315 Query: 276 ttccggttcg 285 | |||||||| Sbjct: 9314 tcccggttcg 9305 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 91 tcggctacttcagccagcgcacggggct 118 ||||||||||||||||| | |||||||| Sbjct: 9502 tcggctacttcagccagaggacggggct 9475
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 258 cgctccgccgtgacgctgttccggttcggcgaggcggccatgagccacaccaagacgcgg 317 ||||| || ||||| || ||||| || || |||| ||||||||||||||||||||| || Sbjct: 22553195 cgctctgctgtgaccctattccgttttggtgaggtggccatgagccacaccaagactcgt 22553136 Query: 318 atggaggaggcctggagc 335 ||||||||||| |||||| Sbjct: 22553135 atggaggaggcatggagc 22553118 Score = 46.1 bits (23), Expect = 0.072 Identities = 65/79 (82%) Strand = Plus / Plus Query: 68 ggagatcatccggcacgtgctgttcggctacttcagccagcgcacggggctcatcgtgca 127 |||||||||||||||| | ||| || |||||||||||||| ||||| || | ||||| Sbjct: 8825918 ggagatcatccggcacacggtgtgggggtacttcagccagcggacgggcctgctggtgca 8825977 Query: 128 catcgaggactcgcacctg 146 | ||||||||||||||| Sbjct: 8825978 gctggaggactcgcacctg 8825996 Score = 44.1 bits (22), Expect = 0.28 Identities = 46/54 (85%) Strand = Plus / Plus Query: 176 cgccgtgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgt 229 |||| |||||||||||||||||||| ||| |||| | |||||||||||||| Sbjct: 3623726 cgccatgtactgggagaccaccatctcctccagcctcgccgactaccgcgccgt 3623779 Score = 42.1 bits (21), Expect = 1.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 216 gactaccgcgccgtggaaggcatcgtgatcgcgcacgcgggccgctccgccgt 268 |||||||||||||| || ||| || ||||||||||| |||||| ||||||| Sbjct: 8826063 gactaccgcgccgtcgacggcgtcaacatcgcgcacgccggccgcaccgccgt 8826115
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 216 gactaccgcgccgtggaaggcatcgtgatcgcgcacgcgggccgctccgccgtgacgctg 275 |||||||||||||| || |||||| ||||||||||| |||||| |||||||| ||||| Sbjct: 9132719 gactaccgcgccgtcgacggcatcaacatcgcgcacgccggccgcaccgccgtgtcgctg 9132660 Query: 276 ttccggttcg 285 | |||||||| Sbjct: 9132659 tcccggttcg 9132650 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 91 tcggctacttcagccagcgcacggggct 118 ||||||||||||||||| | |||||||| Sbjct: 9132847 tcggctacttcagccagaggacggggct 9132820
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 258 cgctccgccgtgacgctgttccggttcggcgaggcggccatgagccacaccaagacgcgg 317 ||||| || ||||| || ||||| || || |||| ||||||||||||||||||||| || Sbjct: 22546224 cgctctgctgtgaccctattccgttttggtgaggtggccatgagccacaccaagactcgt 22546165 Query: 318 atggaggaggcctggagc 335 ||||||||||| |||||| Sbjct: 22546164 atggaggaggcatggagc 22546147 Score = 46.1 bits (23), Expect = 0.072 Identities = 65/79 (82%) Strand = Plus / Plus Query: 68 ggagatcatccggcacgtgctgttcggctacttcagccagcgcacggggctcatcgtgca 127 |||||||||||||||| | ||| || |||||||||||||| ||||| || | ||||| Sbjct: 8823753 ggagatcatccggcacacggtgtgggggtacttcagccagcggacgggcctgctggtgca 8823812 Query: 128 catcgaggactcgcacctg 146 | ||||||||||||||| Sbjct: 8823813 gctggaggactcgcacctg 8823831 Score = 44.1 bits (22), Expect = 0.28 Identities = 46/54 (85%) Strand = Plus / Plus Query: 176 cgccgtgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgt 229 |||| |||||||||||||||||||| ||| |||| | |||||||||||||| Sbjct: 3623837 cgccatgtactgggagaccaccatctcctccagcctcgccgactaccgcgccgt 3623890 Score = 42.1 bits (21), Expect = 1.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 216 gactaccgcgccgtggaaggcatcgtgatcgcgcacgcgggccgctccgccgt 268 |||||||||||||| || ||| || ||||||||||| |||||| ||||||| Sbjct: 8823898 gactaccgcgccgtcgacggcgtcaacatcgcgcacgccggccgcaccgccgt 8823950
>ref|NM_187473.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1419 Score = 46.1 bits (23), Expect = 0.072 Identities = 65/79 (82%) Strand = Plus / Plus Query: 68 ggagatcatccggcacgtgctgttcggctacttcagccagcgcacggggctcatcgtgca 127 |||||||||||||||| | ||| || |||||||||||||| ||||| || | ||||| Sbjct: 936 ggagatcatccggcacacggtgtgggggtacttcagccagcggacgggcctgctggtgca 995 Query: 128 catcgaggactcgcacctg 146 | ||||||||||||||| Sbjct: 996 gctggaggactcgcacctg 1014 Score = 42.1 bits (21), Expect = 1.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 216 gactaccgcgccgtggaaggcatcgtgatcgcgcacgcgggccgctccgccgt 268 |||||||||||||| || ||| || ||||||||||| |||||| ||||||| Sbjct: 1081 gactaccgcgccgtcgacggcgtcaacatcgcgcacgccggccgcaccgccgt 1133
>ref|NM_191355.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1224 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 ggctacttcagccagcgcacggg 115 ||||||||||||||||||||||| Sbjct: 877 ggctacttcagccagcgcacggg 899
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Minus Query: 288 gaggcggccatgagccacaccaa 310 ||||||||||||||||||||||| Sbjct: 101396 gaggcggccatgagccacaccaa 101374
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Minus Query: 288 gaggcggccatgagccacaccaa 310 ||||||||||||||||||||||| Sbjct: 102475 gaggcggccatgagccacaccaa 102453
>gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1364E02, complete sequence Length = 126027 Score = 46.1 bits (23), Expect = 0.072 Identities = 65/79 (82%) Strand = Plus / Plus Query: 68 ggagatcatccggcacgtgctgttcggctacttcagccagcgcacggggctcatcgtgca 127 |||||||||||||||| | ||| || |||||||||||||| ||||| || | ||||| Sbjct: 16806 ggagatcatccggcacacggtgtgggggtacttcagccagcggacgggcctgctggtgca 16865 Query: 128 catcgaggactcgcacctg 146 | ||||||||||||||| Sbjct: 16866 gctggaggactcgcacctg 16884 Score = 42.1 bits (21), Expect = 1.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 216 gactaccgcgccgtggaaggcatcgtgatcgcgcacgcgggccgctccgccgt 268 |||||||||||||| || ||| || ||||||||||| |||||| ||||||| Sbjct: 16951 gactaccgcgccgtcgacggcgtcaacatcgcgcacgccggccgcaccgccgt 17003
>gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1364E02, complete sequence Length = 112265 Score = 46.1 bits (23), Expect = 0.072 Identities = 65/79 (82%) Strand = Plus / Plus Query: 68 ggagatcatccggcacgtgctgttcggctacttcagccagcgcacggggctcatcgtgca 127 |||||||||||||||| | ||| || |||||||||||||| ||||| || | ||||| Sbjct: 69071 ggagatcatccggcacacggtgtgggggtacttcagccagcggacgggcctgctggtgca 69130 Query: 128 catcgaggactcgcacctg 146 | ||||||||||||||| Sbjct: 69131 gctggaggactcgcacctg 69149 Score = 42.1 bits (21), Expect = 1.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 216 gactaccgcgccgtggaaggcatcgtgatcgcgcacgcgggccgctccgccgt 268 |||||||||||||| || ||| || ||||||||||| |||||| ||||||| Sbjct: 69216 gactaccgcgccgtcgacggcgtcaacatcgcgcacgccggccgcaccgccgt 69268
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Minus Query: 93 ggctacttcagccagcgcacggg 115 ||||||||||||||||||||||| Sbjct: 32137549 ggctacttcagccagcgcacggg 32137527 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 gacgccgtgtactgggagaccaccatca 201 |||||||||||||| |||| |||||||| Sbjct: 12278062 gacgccgtgtactgcgagatcaccatca 12278035
>gb|AF330231.1|AF330231 Chlamydomonas reinhardtii putative serine/threonine kinase (ACV4) gene, partial cds; and RNA stability factor MCA1 (MCA1) gene, complete cds Length = 12073 Score = 46.1 bits (23), Expect = 0.072 Identities = 26/27 (96%) Strand = Plus / Minus Query: 41 gctgaagctgcggagcgaggggccggc 67 ||||||||||||| ||||||||||||| Sbjct: 5485 gctgaagctgcggcgcgaggggccggc 5459
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Minus Query: 93 ggctacttcagccagcgcacggg 115 ||||||||||||||||||||||| Sbjct: 8302 ggctacttcagccagcgcacggg 8280
>dbj|AK120179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033K02, full insert sequence Length = 1677 Score = 46.1 bits (23), Expect = 0.072 Identities = 65/79 (82%) Strand = Plus / Plus Query: 68 ggagatcatccggcacgtgctgttcggctacttcagccagcgcacggggctcatcgtgca 127 |||||||||||||||| | ||| || |||||||||||||| ||||| || | ||||| Sbjct: 896 ggagatcatccggcacacggtgtgggggtacttcagccagcggacgggcctgctggtgca 955 Query: 128 catcgaggactcgcacctg 146 | ||||||||||||||| Sbjct: 956 gctggaggactcgcacctg 974 Score = 42.1 bits (21), Expect = 1.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 216 gactaccgcgccgtggaaggcatcgtgatcgcgcacgcgggccgctccgccgt 268 |||||||||||||| || ||| || ||||||||||| |||||| ||||||| Sbjct: 1041 gactaccgcgccgtcgacggcgtcaacatcgcgcacgccggccgcaccgccgt 1093
>dbj|AK069980.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038A09, full insert sequence Length = 1423 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 ggctacttcagccagcgcacggg 115 ||||||||||||||||||||||| Sbjct: 897 ggctacttcagccagcgcacggg 919
>dbj|AK061753.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-H10, full insert sequence Length = 1691 Score = 46.1 bits (23), Expect = 0.072 Identities = 65/79 (82%) Strand = Plus / Plus Query: 68 ggagatcatccggcacgtgctgttcggctacttcagccagcgcacggggctcatcgtgca 127 |||||||||||||||| | ||| || |||||||||||||| ||||| || | ||||| Sbjct: 946 ggagatcatccggcacacggtgtgggggtacttcagccagcggacgggcctgctggtgca 1005 Query: 128 catcgaggactcgcacctg 146 | ||||||||||||||| Sbjct: 1006 gctggaggactcgcacctg 1024 Score = 42.1 bits (21), Expect = 1.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 216 gactaccgcgccgtggaaggcatcgtgatcgcgcacgcgggccgctccgccgt 268 |||||||||||||| || ||| || ||||||||||| |||||| ||||||| Sbjct: 1091 gactaccgcgccgtcgacggcgtcaacatcgcgcacgccggccgcaccgccgt 1143
>ref|XM_470276.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 44.1 bits (22), Expect = 0.28 Identities = 46/54 (85%) Strand = Plus / Plus Query: 176 cgccgtgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgt 229 |||| |||||||||||||||||||| ||| |||| | |||||||||||||| Sbjct: 645 cgccatgtactgggagaccaccatctcctccagcctcgccgactaccgcgccgt 698
>gb|AY389718.1| Hyacinthus orientalis unknown mRNA Length = 757 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 acatcgaggactcgcacctgac 148 |||||||||||||||||||||| Sbjct: 585 acatcgaggactcgcacctgac 606
>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence Length = 160738 Score = 44.1 bits (22), Expect = 0.28 Identities = 46/54 (85%) Strand = Plus / Minus Query: 176 cgccgtgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgt 229 |||| |||||||||||||||||||| ||| |||| | |||||||||||||| Sbjct: 157651 cgccatgtactgggagaccaccatctcctccagcctcgccgactaccgcgccgt 157598
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 44.1 bits (22), Expect = 0.28 Identities = 46/54 (85%) Strand = Plus / Plus Query: 176 cgccgtgtactgggagaccaccatcagctcgtgcctggaggactaccgcgccgt 229 |||| |||||||||||||||||||| ||| |||| | |||||||||||||| Sbjct: 141379 cgccatgtactgggagaccaccatctcctccagcctcgccgactaccgcgccgt 141432
>ref|XM_319975.2| Anopheles gambiae str. PEST ENSANGP00000016783 (ENSANGG00000014294), partial mRNA Length = 2700 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 202 gctcgtgcctggaggactaccgcgcc 227 |||||||||||||||||| ||||||| Sbjct: 2495 gctcgtgcctggaggacttccgcgcc 2520
>ref|XM_319976.2| Anopheles gambiae str. PEST ENSANGP00000022392 (ENSANGG00000014294), partial mRNA Length = 5175 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 202 gctcgtgcctggaggactaccgcgcc 227 |||||||||||||||||| ||||||| Sbjct: 4970 gctcgtgcctggaggacttccgcgcc 4995
>gb|BC086854.1| Danio rerio zgc:103778, mRNA (cDNA clone MGC:103778 IMAGE:7117768), complete cds Length = 1726 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 gctcatcgtgcacatcgagga 136 ||||||||||||||||||||| Sbjct: 163 gctcatcgtgcacatcgagga 183
>ref|NM_001034992.1| Danio rerio zinc finger protein Seson (LOC572950), mRNA Length = 794 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 gctcatcgtgcacatcgagga 136 ||||||||||||||||||||| Sbjct: 139 gctcatcgtgcacatcgagga 159
>gb|DQ191923.1| Microcebus murinus short-wave sensitive type 1 opsin (SWS) gene, exon 2 and partial cds Length = 169 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 191 gaccaccatcagctcgtgcctggag 215 ||||||||||||| ||||||||||| Sbjct: 110 gaccaccatcagcgcgtgcctggag 86
>gb|DQ191904.1| Mirza coquereli short-wave sensitive type 1 opsin (SWS) gene, exon 2 and partial cds Length = 169 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 191 gaccaccatcagctcgtgcctggag 215 ||||||||||||| ||||||||||| Sbjct: 110 gaccaccatcagcgcgtgcctggag 86
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gcctggaggactaccgcgccg 228 ||||||||||||||||||||| Sbjct: 3393329 gcctggaggactaccgcgccg 3393309
>emb|CR524828.12| Zebrafish DNA sequence from clone CH211-22G2 in linkage group 16, complete sequence Length = 188521 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 gctcatcgtgcacatcgagga 136 ||||||||||||||||||||| Sbjct: 62795 gctcatcgtgcacatcgagga 62775
>gb|AY366304.1| Danio rerio zinc finger protein Seson mRNA, complete cds Length = 794 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 gctcatcgtgcacatcgagga 136 ||||||||||||||||||||| Sbjct: 139 gctcatcgtgcacatcgagga 159
>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster Length = 84985 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 272 gctgttccggttcggcgaggcggcc 296 ||||||| ||||||||||||||||| Sbjct: 68978 gctgttcgggttcggcgaggcggcc 69002
>emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene Length = 20394 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gctgttccggttcggcgaggcggcc 296 ||||||| ||||||||||||||||| Sbjct: 12175 gctgttcgggttcggcgaggcggcc 12151
>dbj|AB232919.1| Oryzias latipes hox gene cluster, complete cds, contains hoxAb Length = 240727 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 ctcatcgtgcacatcgaggac 137 ||||||||||||||||||||| Sbjct: 137009 ctcatcgtgcacatcgaggac 137029
>ref|NM_001008631.1| Danio rerio zgc:103778 (zgc:103778), mRNA Length = 1696 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 gctcatcgtgcacatcgagga 136 ||||||||||||||||||||| Sbjct: 163 gctcatcgtgcacatcgagga 183
>gb|AC022497.18| Homo sapiens 3 BAC RP11-80P20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147816 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 tgggagaccaccatcagctcg 206 ||||||||||||||||||||| Sbjct: 120337 tgggagaccaccatcagctcg 120317
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cgtgctgttcggctacttca 102 |||||||||||||||||||| Sbjct: 147040 cgtgctgttcggctacttca 147059
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cgtgctgttcggctacttca 102 |||||||||||||||||||| Sbjct: 302824 cgtgctgttcggctacttca 302843
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 catgagccacaccaagacgc 315 |||||||||||||||||||| Sbjct: 36937 catgagccacaccaagacgc 36918
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 atccgcagacgctgaagctg 50 |||||||||||||||||||| Sbjct: 5261706 atccgcagacgctgaagctg 5261725
>dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0426D06 Length = 162173 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 gacgccgtgtactgggagaccaccatca 201 |||||||||||||| |||| |||||||| Sbjct: 102688 gacgccgtgtactgcgagatcaccatca 102661
>gb|AF104994.1|AF104994 Streptomyces coelicolor A3(2) periplasmic binding protein (atrA), permease (AtrB), ATP-binding protein (atrC), methyltransferase (metZ), signal peptidase, Ni-containing superoxide dismutase (sodN), puromycin N-acetyltransferase (pat), and geranyl transferase (gtr) genes, complete cds; and unknown genes Length = 8568 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 catgagccacaccaagacgc 315 |||||||||||||||||||| Sbjct: 1805 catgagccacaccaagacgc 1824
>gb|AC171010.3| Gallus gallus BAC clone CH261-161I5 from chromosome ul, complete sequence Length = 245010 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gcagacgctgaagctgcgga 54 |||||||||||||||||||| Sbjct: 165864 gcagacgctgaagctgcgga 165883 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,822,900 Number of Sequences: 3902068 Number of extensions: 1822900 Number of successful extensions: 37114 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36610 Number of HSP's gapped (non-prelim): 482 length of query: 335 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 313 effective length of database: 17,147,199,772 effective search space: 5367073528636 effective search space used: 5367073528636 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
