ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast71f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OXR1_CRYNE (Q5KF46) Oxidation resistance protein 1 31 1.4
2MSB1_YEAST (P21339) Morphogenesis-related protein MSB1 (Multicop... 29 3.9
3JHD1A_XENTR (Q5U263) JmjC domain-containing histone demethylatio... 28 6.7

>OXR1_CRYNE (Q5KF46) Oxidation resistance protein 1|
          Length = 465

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 5   HTPRARARGSLPESPAKLKLPRDLKT--TSFSPHFPP 109
           ++PR+R  G LPES    + PR L T  +S SP  PP
Sbjct: 81  YSPRSRPTGVLPESVPHARSPRRLSTFSSSTSPTSPP 117



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>MSB1_YEAST (P21339) Morphogenesis-related protein MSB1 (Multicopy suppressor|
           of bud emergence 1)
          Length = 1137

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 5   HTPRARARGSLPESPAKLKLPRDLKTTSFSPHFPPR 112
           H   A  R  +P+     KLPR LK+  F+  +PPR
Sbjct: 274 HLLLAFLRSFVPQDLESAKLPRTLKSLLFNNQYPPR 309



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>JHD1A_XENTR (Q5U263) JmjC domain-containing histone demethylation protein 1A|
           (EC 1.14.11.-) (F-box/LRR-repeat protein 11) (F-box and
           leucine-rich repeat protein 11)
          Length = 1146

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 12  QEQEREDHSQNHRLSLSSLVISKPPLFPPTFHLVLTDGVPP 134
           ++QER+ H +  R+ + +L  S  PL PP    + T   PP
Sbjct: 428 RDQERDRHGRTERIIIHTLPASLRPLTPPPSLPLPTPDSPP 468


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,881,948
Number of Sequences: 219361
Number of extensions: 546880
Number of successful extensions: 1659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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