ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast71f07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093F02, full insert sequence Length = 2327 Score = 323 bits (163), Expect = 3e-85 Identities = 364/431 (84%) Strand = Plus / Plus Query: 1 tgtcggcgatgctggggctcatcgacttcccggccgccgtccacctgtggcacgtcgaca 60 ||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||| Sbjct: 1406 tgtcggcgatgctggggctgatcgactacccggccgccgtccacctgtggcaggtggaca 1465 Query: 61 aggtggacttctgcgtctgcgcgggggcctacctcggcgtcgtcttcggcagcgtcgaga 120 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 1466 aggtggacttctgcgtctgcctcggcgcctacctcggcgtcgtcttcggcagcgtcgaga 1525 Query: 121 tggggctggtggtggccgtggccatctcggtgctgcgggtgctgctcttcgtggcgcggc 180 | || || || || ||||| | ||||| | || || |||||||| ||||||||||||| Sbjct: 1526 tcggcctcgtcgtcgccgtcgggatctccatcctccgcgtgctgctgttcgtggcgcggc 1585 Query: 181 cgaggaccaccgtgctgggcaacgtgccggacaccaacgtctaccgccggatggaccagt 240 ||||||| || ||||| || ||| | || |||| | ||||||| ||||||||||||| Sbjct: 1586 cgaggacgacggtgctcgggaacatccccaacacgatgatctaccggcggatggaccagt 1645 Query: 241 acacgacggcgcggacggtgcccggcgtgctcgtgctgcgcgtggactcccccatctact 300 |||| | |||| || ||| ||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 1646 acaccgccgcgcagagggtccccggcgtgctcgtgctccgcgtcgactcgcccatctact 1705 Query: 301 tcgccaactctggctacctccgcgagaggatcacccggtggatcgacgacgacgacgagc 360 || ||||| | ||||||| || ||||||||| | ||||||||||||||||| || || | Sbjct: 1706 tcaccaacgccagctacctgcgtgagaggatcgcgcggtggatcgacgacgaggaggacc 1765 Query: 361 ggaccagcgccaagggcgagaccggcgtgcagtacgtcgtcctcgacatgggtgcggtcg 420 | || | |||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 1766 agtgcaaggagaagggcgagatgggcattcagtacgtcgtcctcgacatgggtgcggtcg 1825 Query: 421 gcagcatcgac 431 | ||||||||| Sbjct: 1826 gaagcatcgac 1836
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 256 bits (129), Expect = 5e-65 Identities = 279/329 (84%) Strand = Plus / Minus Query: 1 tgtcggcgatgctggggctcatcgacttcccggccgccgtccacctgtggcacgtcgaca 60 ||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||| Sbjct: 3254060 tgtcggcgatgctggggctgatcgactacccggccgccgtccacctgtggcaggtggaca 3254001 Query: 61 aggtggacttctgcgtctgcgcgggggcctacctcggcgtcgtcttcggcagcgtcgaga 120 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 3254000 aggtggacttctgcgtctgcctcggcgcctacctcggcgtcgtcttcggcagcgtcgaga 3253941 Query: 121 tggggctggtggtggccgtggccatctcggtgctgcgggtgctgctcttcgtggcgcggc 180 | || || || || ||||| | ||||| | || || |||||||| ||||||||||||| Sbjct: 3253940 tcggcctcgtcgtcgccgtcgggatctccatcctccgcgtgctgctgttcgtggcgcggc 3253881 Query: 181 cgaggaccaccgtgctgggcaacgtgccggacaccaacgtctaccgccggatggaccagt 240 ||||||| || ||||| || ||| | || |||| | ||||||| ||||||||||||| Sbjct: 3253880 cgaggacgacggtgctcgggaacatccccaacacgatgatctaccggcggatggaccagt 3253821 Query: 241 acacgacggcgcggacggtgcccggcgtgctcgtgctgcgcgtggactcccccatctact 300 |||| | |||| || ||| ||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 3253820 acaccgccgcgcagagggtccccggcgtgctcgtgctccgcgtcgactcgcccatctact 3253761 Query: 301 tcgccaactctggctacctccgcgagagg 329 || ||||| | ||||||| || |||||| Sbjct: 3253760 tcaccaacgccagctacctgcgtgagagg 3253732 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 372 aagggcgagaccggcgtgcagtacgtcgtcctcgacatgggtg 414 |||||||||| ||| | ||||||||||||||||||||||||| Sbjct: 3253585 aagggcgagatgggcattcagtacgtcgtcctcgacatgggtg 3253543
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 256 bits (129), Expect = 5e-65 Identities = 279/329 (84%) Strand = Plus / Plus Query: 1 tgtcggcgatgctggggctcatcgacttcccggccgccgtccacctgtggcacgtcgaca 60 ||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||| Sbjct: 175153 tgtcggcgatgctggggctgatcgactacccggccgccgtccacctgtggcaggtggaca 175212 Query: 61 aggtggacttctgcgtctgcgcgggggcctacctcggcgtcgtcttcggcagcgtcgaga 120 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 175213 aggtggacttctgcgtctgcctcggcgcctacctcggcgtcgtcttcggcagcgtcgaga 175272 Query: 121 tggggctggtggtggccgtggccatctcggtgctgcgggtgctgctcttcgtggcgcggc 180 | || || || || ||||| | ||||| | || || |||||||| ||||||||||||| Sbjct: 175273 tcggcctcgtcgtcgccgtcgggatctccatcctccgcgtgctgctgttcgtggcgcggc 175332 Query: 181 cgaggaccaccgtgctgggcaacgtgccggacaccaacgtctaccgccggatggaccagt 240 ||||||| || ||||| || ||| | || |||| | ||||||| ||||||||||||| Sbjct: 175333 cgaggacgacggtgctcgggaacatccccaacacgatgatctaccggcggatggaccagt 175392 Query: 241 acacgacggcgcggacggtgcccggcgtgctcgtgctgcgcgtggactcccccatctact 300 |||| | |||| || ||| ||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 175393 acaccgccgcgcagagggtccccggcgtgctcgtgctccgcgtcgactcgcccatctact 175452 Query: 301 tcgccaactctggctacctccgcgagagg 329 || ||||| | ||||||| || |||||| Sbjct: 175453 tcaccaacgccagctacctgcgtgagagg 175481 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 372 aagggcgagaccggcgtgcagtacgtcgtcctcgacatgggtg 414 |||||||||| ||| | ||||||||||||||||||||||||| Sbjct: 175628 aagggcgagatgggcattcagtacgtcgtcctcgacatgggtg 175670
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 256 bits (129), Expect = 5e-65 Identities = 279/329 (84%) Strand = Plus / Minus Query: 1 tgtcggcgatgctggggctcatcgacttcccggccgccgtccacctgtggcacgtcgaca 60 ||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||| Sbjct: 3254171 tgtcggcgatgctggggctgatcgactacccggccgccgtccacctgtggcaggtggaca 3254112 Query: 61 aggtggacttctgcgtctgcgcgggggcctacctcggcgtcgtcttcggcagcgtcgaga 120 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 3254111 aggtggacttctgcgtctgcctcggcgcctacctcggcgtcgtcttcggcagcgtcgaga 3254052 Query: 121 tggggctggtggtggccgtggccatctcggtgctgcgggtgctgctcttcgtggcgcggc 180 | || || || || ||||| | ||||| | || || |||||||| ||||||||||||| Sbjct: 3254051 tcggcctcgtcgtcgccgtcgggatctccatcctccgcgtgctgctgttcgtggcgcggc 3253992 Query: 181 cgaggaccaccgtgctgggcaacgtgccggacaccaacgtctaccgccggatggaccagt 240 ||||||| || ||||| || ||| | || |||| | ||||||| ||||||||||||| Sbjct: 3253991 cgaggacgacggtgctcgggaacatccccaacacgatgatctaccggcggatggaccagt 3253932 Query: 241 acacgacggcgcggacggtgcccggcgtgctcgtgctgcgcgtggactcccccatctact 300 |||| | |||| || ||| ||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 3253931 acaccgccgcgcagagggtccccggcgtgctcgtgctccgcgtcgactcgcccatctact 3253872 Query: 301 tcgccaactctggctacctccgcgagagg 329 || ||||| | ||||||| || |||||| Sbjct: 3253871 tcaccaacgccagctacctgcgtgagagg 3253843 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 372 aagggcgagaccggcgtgcagtacgtcgtcctcgacatgggtg 414 |||||||||| ||| | ||||||||||||||||||||||||| Sbjct: 3253696 aagggcgagatgggcattcagtacgtcgtcctcgacatgggtg 3253654
>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083G16, complete sequence Length = 145590 Score = 256 bits (129), Expect = 5e-65 Identities = 279/329 (84%) Strand = Plus / Minus Query: 1 tgtcggcgatgctggggctcatcgacttcccggccgccgtccacctgtggcacgtcgaca 60 ||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||| Sbjct: 78933 tgtcggcgatgctggggctgatcgactacccggccgccgtccacctgtggcaggtggaca 78874 Query: 61 aggtggacttctgcgtctgcgcgggggcctacctcggcgtcgtcttcggcagcgtcgaga 120 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 78873 aggtggacttctgcgtctgcctcggcgcctacctcggcgtcgtcttcggcagcgtcgaga 78814 Query: 121 tggggctggtggtggccgtggccatctcggtgctgcgggtgctgctcttcgtggcgcggc 180 | || || || || ||||| | ||||| | || || |||||||| ||||||||||||| Sbjct: 78813 tcggcctcgtcgtcgccgtcgggatctccatcctccgcgtgctgctgttcgtggcgcggc 78754 Query: 181 cgaggaccaccgtgctgggcaacgtgccggacaccaacgtctaccgccggatggaccagt 240 ||||||| || ||||| || ||| | || |||| | ||||||| ||||||||||||| Sbjct: 78753 cgaggacgacggtgctcgggaacatccccaacacgatgatctaccggcggatggaccagt 78694 Query: 241 acacgacggcgcggacggtgcccggcgtgctcgtgctgcgcgtggactcccccatctact 300 |||| | |||| || ||| ||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 78693 acaccgccgcgcagagggtccccggcgtgctcgtgctccgcgtcgactcgcccatctact 78634 Query: 301 tcgccaactctggctacctccgcgagagg 329 || ||||| | ||||||| || |||||| Sbjct: 78633 tcaccaacgccagctacctgcgtgagagg 78605 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 372 aagggcgagaccggcgtgcagtacgtcgtcctcgacatgggtg 414 |||||||||| ||| | ||||||||||||||||||||||||| Sbjct: 78458 aagggcgagatgggcattcagtacgtcgtcctcgacatgggtg 78416
>ref|NM_196532.1| Oryza sativa (japonica cultivar-group) Similar to sulfate transporter (ATST1) (OSJNBa0053G13.6), mRNA Length = 1977 Score = 73.8 bits (37), Expect = 4e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 268 tgctcgtgctgcgcgtggactcccccatctacttcgccaactctggctacctccgcgaga 327 |||||||||| ||| | ||||| || |||||||||||||| || |||||||| || |||| Sbjct: 1565 tgctcgtgcttcgcatcgactcacctatctacttcgccaattcaggctacctgcgagaga 1624 Query: 328 ggatcacccggtggatcgacgacga 352 |||||| |||||||||||| |||| Sbjct: 1625 ggatcatgcggtggatcgaccacga 1649 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 19 tcatcgacttcccggccgccgtccacctgtggcacgtcgacaaggtggacttctgcgtct 78 ||||||||| | ||||||||||| |||||| | || |||||| | ||||||||||||| Sbjct: 1316 tcatcgactacaaggccgccgtccggctgtggaaggttgacaagatcgacttctgcgtct 1375 Query: 79 gcgcgggggcctacctcggcgtcgtcttcggc 110 ||| || ||||||||||||||||||||||| Sbjct: 1376 gcgtcggcacctacctcggcgtcgtcttcggc 1407
>dbj|AK107671.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-H09, full insert sequence Length = 1333 Score = 73.8 bits (37), Expect = 4e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 268 tgctcgtgctgcgcgtggactcccccatctacttcgccaactctggctacctccgcgaga 327 |||||||||| ||| | ||||| || |||||||||||||| || |||||||| || |||| Sbjct: 882 tgctcgtgcttcgcatcgactcacctatctacttcgccaattcaggctacctgcgagaga 941 Query: 328 ggatcacccggtggatcgacgacga 352 |||||| |||||||||||| |||| Sbjct: 942 ggatcatgcggtggatcgaccacga 966 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 19 tcatcgacttcccggccgccgtccacctgtggcacgtcgacaaggtggacttctgcgtct 78 ||||||||| | ||||||||||| |||||| | || |||||| | ||||||||||||| Sbjct: 633 tcatcgactacaaggccgccgtccggctgtggaaggttgacaagatcgacttctgcgtct 692 Query: 79 gcgcgggggcctacctcggcgtcgtcttcggc 110 ||| || ||||||||||||||||||||||| Sbjct: 693 gcgtcggcacctacctcggcgtcgtcttcggc 724
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 19 tcatcgacttcccggccgccgtccacctgtggcacgtcgacaaggtggacttctgcgtct 78 ||||||||| | ||||||||||| |||||| | || |||||| | ||||||||||||| Sbjct: 14284947 tcatcgactacaaggccgccgtccggctgtggaaggttgacaagatcgacttctgcgtct 14285006 Query: 79 gcgcgggggcctacctcggcgtcgtcttcggc 110 ||| || ||||||||||||||||||||||| Sbjct: 14285007 gcgtcggcacctacctcggcgtcgtcttcggc 14285038 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 268 tgctcgtgctgcgcgtggactcccccatctacttcgccaactctggctacctccgcgaga 327 |||||||||| ||| | ||||| || |||||||||||||| || |||||||| || |||| Sbjct: 14285330 tgctcgtgcttcgcatcgactcacctatctacttcgccaattcaggctacctgcgagaga 14285389 Query: 328 gg 329 || Sbjct: 14285390 gg 14285391
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 19 tcatcgacttcccggccgccgtccacctgtggcacgtcgacaaggtggacttctgcgtct 78 ||||||||| | ||||||||||| |||||| | || |||||| | ||||||||||||| Sbjct: 32222 tcatcgactacaaggccgccgtccggctgtggaaggttgacaagatcgacttctgcgtct 32281 Query: 79 gcgcgggggcctacctcggcgtcgtcttcggc 110 ||| || ||||||||||||||||||||||| Sbjct: 32282 gcgtcggcacctacctcggcgtcgtcttcggc 32313 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 268 tgctcgtgctgcgcgtggactcccccatctacttcgccaactctggctacctccgcgaga 327 |||||||||| ||| | ||||| || |||||||||||||| || |||||||| || |||| Sbjct: 32605 tgctcgtgcttcgcatcgactcacctatctacttcgccaattcaggctacctgcgagaga 32664 Query: 328 gg 329 || Sbjct: 32665 gg 32666
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 19 tcatcgacttcccggccgccgtccacctgtggcacgtcgacaaggtggacttctgcgtct 78 ||||||||| | ||||||||||| |||||| | || |||||| | ||||||||||||| Sbjct: 14293189 tcatcgactacaaggccgccgtccggctgtggaaggttgacaagatcgacttctgcgtct 14293248 Query: 79 gcgcgggggcctacctcggcgtcgtcttcggc 110 ||| || ||||||||||||||||||||||| Sbjct: 14293249 gcgtcggcacctacctcggcgtcgtcttcggc 14293280 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 268 tgctcgtgctgcgcgtggactcccccatctacttcgccaactctggctacctccgcgaga 327 |||||||||| ||| | ||||| || |||||||||||||| || |||||||| || |||| Sbjct: 14293572 tgctcgtgcttcgcatcgactcacctatctacttcgccaattcaggctacctgcgagaga 14293631 Query: 328 gg 329 || Sbjct: 14293632 gg 14293633
>ref|NM_191791.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2001 Score = 44.1 bits (22), Expect = 0.37 Identities = 46/54 (85%) Strand = Plus / Plus Query: 54 gtcgacaaggtggacttctgcgtctgcgcgggggcctacctcggcgtcgtcttc 107 ||||||||| | ||||||||| ||||| || |||| |||||||||||||||| Sbjct: 1399 gtcgacaagttcgacttctgcatctgcatggtcgccttcctcggcgtcgtcttc 1452
>emb|CR391197.1| Gallus gallus finished cDNA, clone ChEST208a13 Length = 764 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 341 gatcgacgacgacgacgagcgg 362 |||||||||||||||||||||| Sbjct: 48 gatcgacgacgacgacgagcgg 69
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Minus Query: 292 ccatctacttcgccaactctggctacctccgcgagaggatca 333 ||||||||||||||||||| |||||| |||||||||||| Sbjct: 2292880 ccatctacttcgccaactccatgtacctcggcgagaggatca 2292839 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 cggcgatgctggggctcatcg 24 ||||||||||||||||||||| Sbjct: 26446108 cggcgatgctggggctcatcg 26446128 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcgacgacgacgacgagcgg 362 |||||||||||||||||||| Sbjct: 5155004 tcgacgacgacgacgagcgg 5154985
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.37 Identities = 46/54 (85%) Strand = Plus / Plus Query: 54 gtcgacaaggtggacttctgcgtctgcgcgggggcctacctcggcgtcgtcttc 107 ||||||||| | ||||||||| ||||| || |||| |||||||||||||||| Sbjct: 29985520 gtcgacaagttcgacttctgcatctgcatggtcgccttcctcggcgtcgtcttc 29985573
>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480C01 Length = 151100 Score = 44.1 bits (22), Expect = 0.37 Identities = 46/54 (85%) Strand = Plus / Plus Query: 54 gtcgacaaggtggacttctgcgtctgcgcgggggcctacctcggcgtcgtcttc 107 ||||||||| | ||||||||| ||||| || |||| |||||||||||||||| Sbjct: 130078 gtcgacaagttcgacttctgcatctgcatggtcgccttcctcggcgtcgtcttc 130131
>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20 Length = 147363 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Minus Query: 292 ccatctacttcgccaactctggctacctccgcgagaggatca 333 ||||||||||||||||||| |||||| |||||||||||| Sbjct: 14681 ccatctacttcgccaactccatgtacctcggcgagaggatca 14640
>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0535G04 Length = 154180 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Minus Query: 292 ccatctacttcgccaactctggctacctccgcgagaggatca 333 ||||||||||||||||||| |||||| |||||||||||| Sbjct: 152337 ccatctacttcgccaactccatgtacctcggcgagaggatca 152296
>dbj|AK121195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M22, full insert sequence Length = 2808 Score = 44.1 bits (22), Expect = 0.37 Identities = 46/54 (85%) Strand = Plus / Plus Query: 54 gtcgacaaggtggacttctgcgtctgcgcgggggcctacctcggcgtcgtcttc 107 ||||||||| | ||||||||| ||||| || |||| |||||||||||||||| Sbjct: 1769 gtcgacaagttcgacttctgcatctgcatggtcgccttcctcggcgtcgtcttc 1822
>dbj|AK067270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098O05, full insert sequence Length = 2494 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 292 ccatctacttcgccaactctggctacctccgcgagaggatca 333 ||||||||||||||||||| |||||| |||||||||||| Sbjct: 1742 ccatctacttcgccaactccatgtacctcggcgagaggatca 1783
>ref|XM_754841.1| Ustilago maydis 521 hypothetical protein (UM03787.1) partial mRNA Length = 1143 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 cgacgacgagcggaccagcgc 370 ||||||||||||||||||||| Sbjct: 1069 cgacgacgagcggaccagcgc 1049
>gb|AF363689.1|AF363689 Homo sapiens capicua protein (CIC) mRNA, complete cds Length = 5473 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 gagcggaccagcgccaagggc 377 ||||||||||||||||||||| Sbjct: 3803 gagcggaccagcgccaagggc 3823
>ref|NM_001011629.1| Apis mellifera putative transcription factor mblk-1 (Mblk-1), mRNA Length = 14440 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gtggatcgacgacgacgacga 358 ||||||||||||||||||||| Sbjct: 10023 gtggatcgacgacgacgacga 10003
>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0709F06 Length = 170964 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 cggcgatgctggggctcatcg 24 ||||||||||||||||||||| Sbjct: 58147 cggcgatgctggggctcatcg 58167
>gb|AC006486.1|AC006486 Homo sapiens chromosome 19, BAC CIT-B-147B23 (BC85722), complete sequence Length = 111084 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 gagcggaccagcgccaagggc 377 ||||||||||||||||||||| Sbjct: 85104 gagcggaccagcgccaagggc 85124
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 tcgacgacgacgacgagcgga 363 ||||||||||||||||||||| Sbjct: 212172 tcgacgacgacgacgagcgga 212192
>ref|NM_015125.2| Homo sapiens capicua homolog (Drosophila) (CIC), mRNA Length = 5473 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 gagcggaccagcgccaagggc 377 ||||||||||||||||||||| Sbjct: 3803 gagcggaccagcgccaagggc 3823
>dbj|AB047034.1| Apis mellifera mblk-1 mRNA, complete cds Length = 14440 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gtggatcgacgacgacgacga 358 ||||||||||||||||||||| Sbjct: 10023 gtggatcgacgacgacgacga 10003
>dbj|AB002304.1| Human mRNA for KIAA0306 gene, partial cds Length = 4964 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 gagcggaccagcgccaagggc 377 ||||||||||||||||||||| Sbjct: 3294 gagcggaccagcgccaagggc 3314
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 acctcggcgtcgtcttcggc 110 |||||||||||||||||||| Sbjct: 2456815 acctcggcgtcgtcttcggc 2456834
>ref|XM_475974.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2100 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcgacgacgacgacgagcgg 362 |||||||||||||||||||| Sbjct: 1016 tcgacgacgacgacgagcgg 997
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 95 cggcgtcgtcttcggcagcgtcgagatggggc 126 ||||||||| ||||||||| ||||||||||| Sbjct: 2300003 cggcgtcgtgctcggcagcgccgagatggggc 2299972 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tcttcggcagcgtcgagatg 122 |||||||||||||||||||| Sbjct: 2099193 tcttcggcagcgtcgagatg 2099212
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 acctcggcgtcgtcttcggc 110 |||||||||||||||||||| Sbjct: 2457680 acctcggcgtcgtcttcggc 2457699
>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009C07, complete sequence Length = 148731 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcgacgacgacgacgagcgg 362 |||||||||||||||||||| Sbjct: 89667 tcgacgacgacgacgagcgg 89648
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 262 ccggcgtgctcgtgctgcgcgtgg 285 ||||| |||||||||||||||||| Sbjct: 2246074 ccggcatgctcgtgctgcgcgtgg 2246051
>emb|BX640546.13| Zebrafish DNA sequence from clone CH211-152L3 in linkage group 5, complete sequence Length = 101103 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tgctggggctcatcgacttc 29 |||||||||||||||||||| Sbjct: 23878 tgctggggctcatcgacttc 23897
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 acctcggcgtcgtcttcggc 110 |||||||||||||||||||| Sbjct: 1703374 acctcggcgtcgtcttcggc 1703355
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 262 ccggcgtgctcgtgctgcgcgtgg 285 ||||| |||||||||||||||||| Sbjct: 407416 ccggcatgctcgtgctgcgcgtgg 407393
>emb|AJ581745.1|BNA581745 Brassica napus mRNA for sulphate transporter (bst3.1 gene) Length = 2193 Score = 40.1 bits (20), Expect = 5.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 291 cccatctacttcgccaactctggctacctccgcgagaggatcac 334 ||||||||||| |||||| |||| ||| | |||||||| ||||| Sbjct: 1670 cccatctactttgccaacgctggttacttgcgcgagagaatcac 1713
>gb|AE012495.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 403 of 460 of the complete genome Length = 10381 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gtggccatctcggtgctgcg 157 |||||||||||||||||||| Sbjct: 760 gtggccatctcggtgctgcg 779
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gacggtgcccggcgtgctcg 273 |||||||||||||||||||| Sbjct: 4357063 gacggtgcccggcgtgctcg 4357044
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gggtgctgctcttcgtggcg 176 |||||||||||||||||||| Sbjct: 1916895 gggtgctgctcttcgtggcg 1916876
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gtggccatctcggtgctgcg 157 |||||||||||||||||||| Sbjct: 4505873 gtggccatctcggtgctgcg 4505892
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 ccggcgtgctcgtgctgcgcgtgg 285 ||||| |||||||||||||||||| Sbjct: 1580676 ccggcatgctcgtgctgcgcgtgg 1580699
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 cgacgacgacgagcggaccagcgc 370 ||||||||||||||||| |||||| Sbjct: 23125476 cgacgacgacgagcggagcagcgc 23125453 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gggctggtggtggccgtggc 142 |||||||||||||||||||| Sbjct: 2428630 gggctggtggtggccgtggc 2428649
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcgacgacgacgacgagcgg 362 |||||||||||||||||||| Sbjct: 28935374 tcgacgacgacgacgagcgg 28935355
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 tggatcgacgacgacgacga 358 |||||||||||||||||||| Sbjct: 32262070 tggatcgacgacgacgacga 32262051
>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0539D10 Length = 158691 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 tggatcgacgacgacgacga 358 |||||||||||||||||||| Sbjct: 106083 tggatcgacgacgacgacga 106064
>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1147_D11 Length = 138444 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcgacgacgacgacgagcgg 362 |||||||||||||||||||| Sbjct: 114042 tcgacgacgacgacgagcgg 114023
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 agggcgagaccggcgtgcag 392 |||||||||||||||||||| Sbjct: 300007 agggcgagaccggcgtgcag 300026
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 gctggtggtggccgtggccatctc 148 |||||||||||| ||||||||||| Sbjct: 4103014 gctggtggtggcggtggccatctc 4102991 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 gaccagtacacgacggcgcg 253 |||||||||||||||||||| Sbjct: 2886050 gaccagtacacgacggcgcg 2886031
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcgacgacgacgacgagcgg 362 |||||||||||||||||||| Sbjct: 21726 tcgacgacgacgacgagcgg 21707
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 tggatcgacgacgacgacga 358 |||||||||||||||||||| Sbjct: 37902 tggatcgacgacgacgacga 37883
>dbj|AK107091.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H01, full insert sequence Length = 2265 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcgacgacgacgacgagcgg 362 |||||||||||||||||||| Sbjct: 1076 tcgacgacgacgacgagcgg 1057
>dbj|AK106373.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C12, full insert sequence Length = 1257 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcgacgacgacgacgagcgg 362 |||||||||||||||||||| Sbjct: 910 tcgacgacgacgacgagcgg 891
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 cgacgacgacgagcggaccagcgc 370 ||||||||||||||||| |||||| Sbjct: 23053667 cgacgacgacgagcggagcagcgc 23053644 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gggctggtggtggccgtggc 142 |||||||||||||||||||| Sbjct: 2428574 gggctggtggtggccgtggc 2428593
>emb|AL928864.11| Zebrafish DNA sequence from clone CH211-10P21, complete sequence Length = 181508 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tgctggggctcatcgacttc 29 |||||||||||||||||||| Sbjct: 61610 tgctggggctcatcgacttc 61591
>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 156258 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gggctggtggtggccgtggc 142 |||||||||||||||||||| Sbjct: 153821 gggctggtggtggccgtggc 153840
>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 122901 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 gggctggtggtggccgtggc 142 |||||||||||||||||||| Sbjct: 114862 gggctggtggtggccgtggc 114843
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 cgacgacgacgagcggaccagcgc 370 ||||||||||||||||| |||||| Sbjct: 52921 cgacgacgacgagcggagcagcgc 52944
>gb|U85709.1|ANU85709 Actinomyces naeslundii putative fimbrial-associated protein genes, complete cds Length = 2733 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ctgcgtctgcgcgggggcct 90 |||||||||||||||||||| Sbjct: 1586 ctgcgtctgcgcgggggcct 1605
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggccgtggccatctcggtg 152 |||||||||||||||||||| Sbjct: 2108231 tggccgtggccatctcggtg 2108250 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,295,848 Number of Sequences: 3902068 Number of extensions: 2295848 Number of successful extensions: 88624 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 85212 Number of HSP's gapped (non-prelim): 3408 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
