ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast71f01 |
|---|---|
| Clone Library Name | barley_pub |
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 31.2 bits (69), Expect = 0.64 Identities = 21/72 (29%), Positives = 29/72 (40%) Frame = +3 Query: 78 SERASSGKPPYTGRRRCRCSSPTTFAPRRISTPATXXXXXXXXXXXXXXSSPAGSCHSRT 257 S + SG+ +G SSPTT P S+P T SS A + S Sbjct: 33 SSTSGSGQSTSSGTTNSS-SSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAP 91 Query: 258 SSSAGTLRRPAS 293 S+++ T P S Sbjct: 92 STASSTTSIPTS 103
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 31.2 bits (69), Expect = 0.64 Identities = 21/72 (29%), Positives = 29/72 (40%) Frame = +3 Query: 78 SERASSGKPPYTGRRRCRCSSPTTFAPRRISTPATXXXXXXXXXXXXXXSSPAGSCHSRT 257 S + SG+ +G SSPTT P S+P T SS A + S Sbjct: 33 SSTSGSGQSTSSGTTNSS-SSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAP 91 Query: 258 SSSAGTLRRPAS 293 S+++ T P S Sbjct: 92 STASSTTSIPTS 103
>SYRB2_RHIME (Q9Z3Q1) Probable transcriptional regulator syrB2| Length = 151 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +2 Query: 191 QEKTRLMLAETELPSGLLPLKDIIE-CGYVEETGFVW 298 Q K +L L ET++ G + LKD I+ G E+T + W Sbjct: 59 QRKEKLKLIETQVTEGKVTLKDAIKSAGISEQTYYQW 95
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%) Frame = +1 Query: 19 NHTSELAAEASKQSSCVCE*ASERAQGNH-------PTPAGDDADAHPRRRSRQGG 165 +H S+L+ ++ +S+ + R QG+H PTPAG AD H GG Sbjct: 225 HHGSDLSHHSASEST-----SGHRGQGSHTSPSALSPTPAGVSADEHHNGSGTGGG 275
>NEMO_HUMAN (Q9Y6K9) NF-kappa-B essential modulator (NEMO) (NF-kappa-B| essential modifier) (Inhibitor of nuclear factor kappa-B kinase gamma subunit) (IkB kinase gamma subunit) (I-kappa-B kinase gamma) (IKK-gamma) (IKKG) (IkB kinase-associated protein 1) Length = 419 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = +2 Query: 29 VSSQLKQASKARACVSERASELRETTLHRPATMPMLIPDDVRAKADIYTGDAAGQEKTRL 208 + QL+QA +A E +L+E M + ++A+ADIY D + + R Sbjct: 263 LKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETV--PVLKAQADIYKADFQAERQARE 320 Query: 209 MLAE 220 LAE Sbjct: 321 KLAE 324
>VE2_HPV17 (P36785) Regulatory protein E2| Length = 452 Score = 28.5 bits (62), Expect = 4.1 Identities = 25/84 (29%), Positives = 32/84 (38%) Frame = +3 Query: 111 TGRRRCRCSSPTTFAPRRISTPATXXXXXXXXXXXXXXSSPAGSCHSRTSSSAGTLRRPA 290 TGR + T FAP S+PA SSPA S TS S T +R + Sbjct: 182 TGRWEVHVNEDTIFAPVTSSSPAAGEGTDASPINAASRSSPARGL-SATSVSTRTTQRTS 240 Query: 291 SCG*AEEAGGPLLRKAGRTSLRHR 362 +A P T+ RH+ Sbjct: 241 PRRYRRKASSPT-----ATTTRHK 259
>DOIS_STRFR (Q53U19) 2-deoxy-scyllo-inosose synthase (EC 4.2.3.-) (DOI| synthase) (DOIS) Length = 430 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +2 Query: 41 LKQASKARACVSER-ASELRETTLHRPATMPMLIPDDVRAKADIYTGD 181 +K A R + +R A LR T + TM +I + + AKAD+ +GD Sbjct: 186 VKNALAIRPAMLDRLAGALRPDTRYDDETMRWIIAESLAAKADVTSGD 233
>ATG13_CANAL (Q5A1Z5) Autophagy-related protein 13| Length = 761 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +3 Query: 108 YTGRRRCRCSSPTTFAPRRISTPATXXXXXXXXXXXXXXSSPAGSCHSRTSSSAGT 275 ++ RR SPTT P I TP++ S + + +RT S+A T Sbjct: 616 FSAARRSSNISPTTAVPSSIGTPSSISSRIPHVTTIISSSDVSSTGGNRTKSAATT 671
>SYT8_RAT (Q925B4) Synaptotagmin-8 (Synaptotagmin VIII) (SytVIII)| Length = 395 Score = 27.7 bits (60), Expect = 7.0 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 17/89 (19%) Frame = +2 Query: 59 ARACVSERASELRETTLHRPATMPM-------LIPDDVRAKADIYTGDAAGQEKTRLM-- 211 AR VS +A ET +HR PM L+P KA + K +L+ Sbjct: 150 ARVSVSTQAGRRHETKVHRGTLCPMFEETCCFLVPPAELPKATL---------KVQLLDF 200 Query: 212 --------LAETELPSGLLPLKDIIECGY 274 L E +LP G + L+ ++E Y Sbjct: 201 KRFSEHEPLGELQLPLGTVDLQHVLESWY 229
>K1949_PIG (Q767M0) Protein KIAA1949 homolog| Length = 618 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = +2 Query: 8 PKFETTQVSSQLKQASKARACVSERASE-LRETTLHRPATMPMLIPDDVRAKADIYTGDA 184 P +Q S + +AS+ R E + L E T+P ++P+D+ + T +A Sbjct: 250 PDSGESQEQSLVLEASEWRLSSGEERKDCLEECGRKEERTLPGMVPEDITGSPETLTMEA 309 Query: 185 AG 190 AG Sbjct: 310 AG 311
>CARB_BRUSU (Q8FZJ3) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1162 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 122 TMPMLIPDDVRAKADIYTGDAAGQEKTRL 208 T+P L+P+D++AK Y D GQ T L Sbjct: 804 TVPELVPEDIKAK---YPNDKTGQINTLL 829
>CARB_BRUME (Q8YIC2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1162 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 122 TMPMLIPDDVRAKADIYTGDAAGQEKTRL 208 T+P L+P+D++AK Y D GQ T L Sbjct: 804 TVPELVPEDIKAK---YPNDKTGQINTLL 829
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Frame = +2 Query: 2 THPKFETTQVSSQL-------KQASKARACVSERASELRETTLHRPATMPMLIPDDVRAK 160 T K E ++V+ L K + + +A +++ + P IPDD + Sbjct: 1096 TDQKLEESEVTKSLVSVLPEKKPSEEEKALPADKKEKKPPAAEAPPLEEKKPIPDDQKLP 1155 Query: 161 ADIYTGDAAGQEKTRLMLAETELP 232 D + G+EK L+ A ++P Sbjct: 1156 PDAKPSASEGEEKRDLLKAHVQIP 1179
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Frame = +1 Query: 82 SERAQGNHP-TPAGDDADAHPRRRSRQGG 165 S R +HP +P G D A PRRR GG Sbjct: 56 SPRQIAHHPRSPRGSDRRAEPRRRDAGGG 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,439,690 Number of Sequences: 219361 Number of extensions: 775142 Number of successful extensions: 2631 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2557 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2627 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
