ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast71e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LIMK1_CHICK (Q8QFP8) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) ... 31 1.6
2LIMK1_RAT (P53669) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) 28 7.9
3LIMK1_MOUSE (P53668) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) ... 28 7.9
4LIMK1_HUMAN (P53667) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) 28 7.9

>LIMK1_CHICK (Q8QFP8) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (chLIMK1)|
          Length = 662

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 37  AD*DYIVRRRGFDGDVQGFPPRVCSPAC 120
           AD DY+ R   F  +V+GF  R C PAC
Sbjct: 555 ADPDYLPRTTDFGLNVRGFLERYCPPAC 582



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>LIMK1_RAT (P53669) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1)|
          Length = 647

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 37  AD*DYIVRRRGFDGDVQGFPPRVCSPAC 120
           AD DY+ R   F  +V+GF  R C P C
Sbjct: 548 ADPDYLPRTMDFGLNVRGFLDRYCPPNC 575



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>LIMK1_MOUSE (P53668) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (KIZ-1)|
          Length = 647

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 37  AD*DYIVRRRGFDGDVQGFPPRVCSPAC 120
           AD DY+ R   F  +V+GF  R C P C
Sbjct: 548 ADPDYLPRTMDFGLNVRGFLDRYCPPNC 575



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>LIMK1_HUMAN (P53667) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1)|
          Length = 647

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 37  AD*DYIVRRRGFDGDVQGFPPRVCSPAC 120
           AD DY+ R   F  +V+GF  R C P C
Sbjct: 548 ADPDYLPRTMDFGLNVRGFLDRYCPPNC 575


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,302,728
Number of Sequences: 219361
Number of extensions: 488372
Number of successful extensions: 1659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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