ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast71d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463950.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.10
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
3dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
4dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
5gb|BC053506.1| Homo sapiens protein phosphatase 1, regulatory (i... 42 1.6
6gb|BC007854.2| Homo sapiens protein phosphatase 1, regulatory (i... 42 1.6
7gb|BC049841.1| Homo sapiens protein phosphatase 1, regulatory (i... 42 1.6
8dbj|AK126743.1| Homo sapiens cDNA FLJ44789 fis, clone BRACE3038760 42 1.6
9dbj|AK094577.1| Homo sapiens cDNA FLJ37258 fis, clone BRAMY2010208 42 1.6
10emb|CR590987.1| full-length cDNA clone CS0DJ003YB15 of T cells (... 42 1.6
11gb|AC084125.9| Homo sapiens chromosome 8, clone CTD-2517M22, com... 42 1.6
12ref|NM_032902.5| Homo sapiens protein phosphatase 1, regulatory ... 42 1.6
13gb|DQ019634.1| Triticum aestivum U2AF small subunit mRNA, comple... 42 1.6
14dbj|AK090471.1| Homo sapiens mRNA for FLJ00392 protein 42 1.6
15gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.2
16gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 6.2
17gb|AC107058.4| Homo sapiens BAC clone RP11-633G11 from 4, comple... 40 6.2
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
19dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
20gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 40 6.2 
>ref|XM_463950.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 225

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 433 ggcgccgccatggccgagcacctcgcg 459
           ||||||||||||||||| |||||||||
Sbjct: 141 ggcgccgccatggccgaccacctcgcg 115
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 433     ggcgccgccatggccgagcacctcgcg 459
               ||||||||||||||||| |||||||||
Sbjct: 1302083 ggcgccgccatggccgaccacctcgcg 1302109
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>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0575F10
          Length = 150462

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 433    ggcgccgccatggccgagcacctcgcg 459
              ||||||||||||||||| |||||||||
Sbjct: 133174 ggcgccgccatggccgaccacctcgcg 133200
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>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0018H03, complete sequence
          Length = 94450

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 433   ggcgccgccatggccgagcacctcgcg 459
             ||||||||||||||||| |||||||||
Sbjct: 76112 ggcgccgccatggccgaccacctcgcg 76138
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>gb|BC053506.1| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit
           16A, mRNA (cDNA clone MGC:59641 IMAGE:2823232), complete
           cds
          Length = 2326

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 435 cgccgccatggccgagcacct 455
           |||||||||||||||||||||
Sbjct: 463 cgccgccatggccgagcacct 483
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>gb|BC007854.2| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit
           16A, mRNA (cDNA clone MGC:14333 IMAGE:4298333), complete
           cds
          Length = 1967

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 435 cgccgccatggccgagcacct 455
           |||||||||||||||||||||
Sbjct: 122 cgccgccatggccgagcacct 142
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>gb|BC049841.1| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit
           16A, mRNA (cDNA clone MGC:51793 IMAGE:4991947), complete
           cds
          Length = 2201

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 435 cgccgccatggccgagcacct 455
           |||||||||||||||||||||
Sbjct: 374 cgccgccatggccgagcacct 394
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>dbj|AK126743.1| Homo sapiens cDNA FLJ44789 fis, clone BRACE3038760
          Length = 3392

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 435  cgccgccatggccgagcacct 455
            |||||||||||||||||||||
Sbjct: 2560 cgccgccatggccgagcacct 2540
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>dbj|AK094577.1| Homo sapiens cDNA FLJ37258 fis, clone BRAMY2010208
          Length = 2625

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 435  cgccgccatggccgagcacct 455
            |||||||||||||||||||||
Sbjct: 1055 cgccgccatggccgagcacct 1035
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>emb|CR590987.1| full-length cDNA clone CS0DJ003YB15 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 2660

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 435 cgccgccatggccgagcacct 455
           |||||||||||||||||||||
Sbjct: 909 cgccgccatggccgagcacct 929
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>gb|AC084125.9| Homo sapiens chromosome 8, clone CTD-2517M22, complete sequence
          Length = 197294

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 435    cgccgccatggccgagcacct 455
              |||||||||||||||||||||
Sbjct: 131564 cgccgccatggccgagcacct 131544
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>ref|NM_032902.5| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit
           16A (PPP1R16A), mRNA
          Length = 2326

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 435 cgccgccatggccgagcacct 455
           |||||||||||||||||||||
Sbjct: 463 cgccgccatggccgagcacct 483
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>gb|DQ019634.1| Triticum aestivum U2AF small subunit mRNA, complete cds
          Length = 1199

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 439 gccatggccgagcacctcgcg 459
           |||||||||||||||||||||
Sbjct: 1   gccatggccgagcacctcgcg 21
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>dbj|AK090471.1| Homo sapiens mRNA for FLJ00392 protein
          Length = 4224

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 435 cgccgccatggccgagcacct 455
           |||||||||||||||||||||
Sbjct: 978 cgccgccatggccgagcacct 998
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 438     cgccatggccgagcacctcg 457
               ||||||||||||||||||||
Sbjct: 1689382 cgccatggccgagcacctcg 1689363
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    ccagggggcgccgccatggc 446
              ||||||||||||||||||||
Sbjct: 300339 ccagggggcgccgccatggc 300358
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>gb|AC107058.4| Homo sapiens BAC clone RP11-633G11 from 4, complete sequence
          Length = 126135

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   gtgtgtatgatttgtgtttc 376
             ||||||||||||||||||||
Sbjct: 63821 gtgtgtatgatttgtgtttc 63802
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 113     ttcttatcaggtcgggagat 132
               ||||||||||||||||||||
Sbjct: 7026784 ttcttatcaggtcgggagat 7026803
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>dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0066H10
          Length = 200968

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   ttcttatcaggtcgggagat 132
             ||||||||||||||||||||
Sbjct: 53473 ttcttatcaggtcgggagat 53492
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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 157     gaagagataaatgaagttat 176
               ||||||||||||||||||||
Sbjct: 1008038 gaagagataaatgaagttat 1008019


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,082,757
Number of Sequences: 3902068
Number of extensions: 3082757
Number of successful extensions: 55461
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55317
Number of HSP's gapped (non-prelim): 144
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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