ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast71d01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY091513.1| Triticum aestivum beta-D-glucan exohydrolase mRNA, complete cds Length = 2116 Score = 270 bits (136), Expect = 4e-69 Identities = 217/244 (88%) Strand = Plus / Plus Query: 200 caagatcacctctcttctcctcatgttctgcttggtggtgttggcgagagcagagtatcc 259 ||||| ||||| | ||||||||||||||||||||| || ||||| || || || |||| Sbjct: 15 caagaccacctttgttctcctcatgttctgcttggcggcgttgggaagcgcggattatct 74 Query: 260 caagtacaaggatccgaaccagcctctcgccgttcgcatcaaggatctgcttggccggat 319 |||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||| Sbjct: 75 caagtacaaggatccgaagcagcctcttggcgttcgcatcaaggatctgcttggtcggat 134 Query: 320 gactcttgccgaaaagatcggccagatgactcagattgagagggtgaatgccacggcaga 379 ||| || || |||||||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 135 gaccctcgctgaaaagatcggccagatgacccagattgagagggagaatgccacagcaga 194 Query: 380 ggccatgtccaaatacttcataggcagcgtgctgagtggtggaggcagcgtgcctgcacc 439 |||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||| | || Sbjct: 195 ggccatgtccaagtacttcataggtagcgtactgagtggtggaggcagtgtgccttctcc 254 Query: 440 tcag 443 |||| Sbjct: 255 tcag 258
>gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydrolase, isoenzyme ExoII, mRNA, complete cds Length = 2105 Score = 268 bits (135), Expect = 1e-68 Identities = 210/235 (89%) Strand = Plus / Plus Query: 200 caagatcacctctcttctcctcatgttctgcttggtggtgttggcgagagcagagtatcc 259 ||||| ||||| | ||||||||||||||||||||| || ||||| || || || |||| Sbjct: 40 caagaccacctttgttctcctcatgttctgcttggcggcgttgggaagcgcggattatct 99 Query: 260 caagtacaaggatccgaaccagcctctcgccgttcgcatcaaggatctgcttggccggat 319 |||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||| Sbjct: 100 caagtacaaggatccgaagcagcctcttggcgttcgcatcaaggatctgcttggtcggat 159 Query: 320 gactcttgccgaaaagatcggccagatgactcagattgagagggtgaatgccacggcaga 379 |||||| || |||||||| ||||||||||| ||||| ||||||| ||||||||||||||| Sbjct: 160 gactctcgctgaaaagataggccagatgacccagatcgagagggagaatgccacggcaga 219 Query: 380 ggccatgtccaaatacttcataggcagcgtgctgagtggtggaggcagcgtgcct 434 |||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 220 ggccatgtccaagtacttcataggtagcgtactgagtggtggaggcagtgtgcct 274
>gb|AY586531.1| Secale cereale cell wall beta-glucosidase mRNA, complete cds Length = 2215 Score = 232 bits (117), Expect = 8e-58 Identities = 219/253 (86%) Strand = Plus / Plus Query: 182 caagatgaggagttcacgcaagatcacctctcttctcctcatgttctgcttggtggtgtt 241 ||||||| |||||| | ||||| ||||| | ||||||||||||||||||||| || ||| Sbjct: 179 caagatggggagtttgcacaagaccacctttgttctcctcatgttctgcttggcggcgtt 238 Query: 242 ggcgagagcagagtatcccaagtacaaggatccgaaccagcctctcgccgttcgcatcaa 301 || || || || ||| |||||||||||||||||| |||||| | | || |||||||| Sbjct: 239 gggaagcgcggatcatctcaagtacaaggatccgaagcagcctattggtgtccgcatcaa 298 Query: 302 ggatctgcttggccggatgactcttgccgaaaagatcggccagatgactcagattgagag 361 |||||||||||| ||||||||||| || |||||||| ||||||||||| ||||||||||| Sbjct: 299 ggatctgcttggtcggatgactctggctgaaaagattggccagatgacccagattgagag 358 Query: 362 ggtgaatgccacggcagaggccatgtccaaatacttcataggcagcgtgctgagtggtgg 421 | ||||||||| ||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct: 359 agagaatgccacagcagaggccatgtccaagtacttcataggtagcgtactcagtggtgg 418 Query: 422 aggcagcgtgcct 434 ||||||||||||| Sbjct: 419 aggcagcgtgcct 431
>gb|AY103742.1| Zea mays PCO090119 mRNA sequence Length = 2612 Score = 184 bits (93), Expect = 2e-43 Identities = 192/225 (85%) Strand = Plus / Plus Query: 219 ctcatgttctgcttggtggtgttggcgagagcagagtatcccaagtacaaggatccgaac 278 |||||||||||| || | | | ||| |||||| ||||| | |||||||||||| || || Sbjct: 417 ctcatgttctgcctgctagcgctggggagagcggagtacctcaagtacaaggacccaaag 476 Query: 279 cagcctctcgccgttcgcatcaaggatctgcttggccggatgactcttgccgaaaagatc 338 ||||| |||| |||||||||||||| ||||| || ||||||||||| |||||||||||| Sbjct: 477 cagcccgtcgctgttcgcatcaaggacctgctgggtcggatgactctcgccgaaaagatc 536 Query: 339 ggccagatgactcagattgagagggtgaatgccacggcagaggccatgtccaaatacttc 398 ||||||||||| ||||| ||||||| || |||||||| || || || ||||||||||| Sbjct: 537 ggccagatgacgcagatcgagagggaaaacgccacggccgacgcgctggccaaatacttc 596 Query: 399 ataggcagcgtgctgagtggtggaggcagcgtgcctgcacctcag 443 ||||| ||||||||||| || ||||||||||||||||| |||||| Sbjct: 597 ataggtagcgtgctgagcggcggaggcagcgtgcctgctcctcag 641
>gb|AF225411.1|AF225411 Zea mays exoglucanase precursor (exg1) gene, complete cds Length = 4193 Score = 145 bits (73), Expect = 1e-31 Identities = 157/185 (84%) Strand = Plus / Plus Query: 219 ctcatgttctgcttggtggtgttggcgagagcagagtatcccaagtacaaggatccgaac 278 |||||||||||| || | | | ||| |||||| ||||| | |||||||||||| ||||| Sbjct: 716 ctcatgttctgcctgctagcgctggggagagcggagtacctcaagtacaaggacccgaag 775 Query: 279 cagcctctcgccgttcgcatcaaggatctgcttggccggatgactcttgccgaaaagatc 338 ||||| |||| |||||||||||||| ||||| || ||||||||||| |||||||||||| Sbjct: 776 cagcccgtcgctgttcgcatcaaggacctgctgggtcggatgactctcgccgaaaagatc 835 Query: 339 ggccagatgactcagattgagagggtgaatgccacggcagaggccatgtccaaatacttc 398 ||||||||||| ||||| ||||||| || |||||||| || || || ||||||||||| Sbjct: 836 ggccagatgacgcagatcgagagggaaaacgccacggccgacgcgctggccaaatacttc 895 Query: 399 atagg 403 ||||| Sbjct: 896 atagg 900 Score = 46.1 bits (23), Expect = 0.098 Identities = 35/39 (89%) Strand = Plus / Plus Query: 405 agcgtgctgagtggtggaggcagcgtgcctgcacctcag 443 |||||||| || || ||||||||||||||||| |||||| Sbjct: 998 agcgtgctcagcggcggaggcagcgtgcctgctcctcag 1036
>ref|XM_469751.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2156 Score = 135 bits (68), Expect = 1e-28 Identities = 155/184 (84%) Strand = Plus / Plus Query: 260 caagtacaaggatccgaaccagcctctcgccgttcgcatcaaggatctgcttggccggat 319 |||||| ||||||||||| ||||| || | ||||| ||||||||||||| |||||||| Sbjct: 353 caagtataaggatccgaagcagcccgtctctgttcgtgtcaaggatctgctcggccggat 412 Query: 320 gactcttgccgaaaagatcggccagatgactcagattgagagggtgaatgccacggcaga 379 |||||| || || ||||| ||||||||||| || || ||||||| |||||||||||| || Sbjct: 413 gactctcgctgagaagattggccagatgacccaaatcgagagggagaatgccacggcgga 472 Query: 380 ggccatgtccaaatacttcataggcagcgtgctgagtggtggaggcagcgtgcctgcacc 439 | || |||| ||||||||||| || || ||||||||||||||||| |||||||| || Sbjct: 473 gcagattgccaagtacttcataggtagtgtactgagtggtggaggcagtgtgcctgctcc 532 Query: 440 tcag 443 |||| Sbjct: 533 tcag 536
>dbj|AK122100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125I15, full insert sequence Length = 2144 Score = 135 bits (68), Expect = 1e-28 Identities = 155/184 (84%) Strand = Plus / Plus Query: 260 caagtacaaggatccgaaccagcctctcgccgttcgcatcaaggatctgcttggccggat 319 |||||| ||||||||||| ||||| || | ||||| ||||||||||||| |||||||| Sbjct: 93 caagtataaggatccgaagcagcccgtctctgttcgtgtcaaggatctgctcggccggat 152 Query: 320 gactcttgccgaaaagatcggccagatgactcagattgagagggtgaatgccacggcaga 379 |||||| || || ||||| ||||||||||| || || ||||||| |||||||||||| || Sbjct: 153 gactctcgctgagaagattggccagatgacccaaatcgagagggagaatgccacggcgga 212 Query: 380 ggccatgtccaaatacttcataggcagcgtgctgagtggtggaggcagcgtgcctgcacc 439 | || |||| ||||||||||| || || ||||||||||||||||| |||||||| || Sbjct: 213 gcagattgccaagtacttcataggtagtgtactgagtggtggaggcagtgtgcctgctcc 272 Query: 440 tcag 443 |||| Sbjct: 273 tcag 276
>dbj|AK065044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H22, full insert sequence Length = 3093 Score = 135 bits (68), Expect = 1e-28 Identities = 155/184 (84%) Strand = Plus / Plus Query: 260 caagtacaaggatccgaaccagcctctcgccgttcgcatcaaggatctgcttggccggat 319 |||||| ||||||||||| ||||| || | ||||| ||||||||||||| |||||||| Sbjct: 1043 caagtataaggatccgaagcagcccgtctctgttcgtgtcaaggatctgctcggccggat 1102 Query: 320 gactcttgccgaaaagatcggccagatgactcagattgagagggtgaatgccacggcaga 379 |||||| || || ||||| ||||||||||| || || ||||||| |||||||||||| || Sbjct: 1103 gactctcgctgagaagattggccagatgacccaaatcgagagggagaatgccacggcgga 1162 Query: 380 ggccatgtccaaatacttcataggcagcgtgctgagtggtggaggcagcgtgcctgcacc 439 | || |||| ||||||||||| || || ||||||||||||||||| |||||||| || Sbjct: 1163 gcagattgccaagtacttcataggtagtgtactgagtggtggaggcagtgtgcctgctcc 1222 Query: 440 tcag 443 |||| Sbjct: 1223 tcag 1226
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 3e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 260 caagtacaaggatccgaaccagcctctcgccgttcgcatcaaggatctgcttggccggat 319 |||||| ||||||||||| ||||| || | ||||| ||||||||||||| |||||||| Sbjct: 30561619 caagtataaggatccgaagcagcccgtctctgttcgtgtcaaggatctgctcggccggat 30561678 Query: 320 gactcttgccgaaaagatcggccagatgactcagattgagagggtgaatgccacggc 376 |||||| || || ||||| ||||||||||| || || ||||||| |||||||||||| Sbjct: 30561679 gactctcgctgagaagattggccagatgacccaaatcgagagggagaatgccacggc 30561735 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 411 ctgagtggtggaggcagcgtgcctgcacctcag 443 ||||||||||||||||| |||||||| |||||| Sbjct: 30561867 ctgagtggtggaggcagtgtgcctgctcctcag 30561899 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 315 cggatgactcttgccgaaaagatcggccagatgactcagat 355 |||||||| || || || ||||||||||||||||| ||||| Sbjct: 30592877 cggatgacgctcgcggagaagatcggccagatgacgcagat 30592917
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 97.6 bits (49), Expect = 3e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 260 caagtacaaggatccgaaccagcctctcgccgttcgcatcaaggatctgcttggccggat 319 |||||| ||||||||||| ||||| || | ||||| ||||||||||||| |||||||| Sbjct: 93192 caagtataaggatccgaagcagcccgtctctgttcgtgtcaaggatctgctcggccggat 93251 Query: 320 gactcttgccgaaaagatcggccagatgactcagattgagagggtgaatgccacggc 376 |||||| || || ||||| ||||||||||| || || ||||||| |||||||||||| Sbjct: 93252 gactctcgctgagaagattggccagatgacccaaatcgagagggagaatgccacggc 93308 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 411 ctgagtggtggaggcagcgtgcctgcacctcag 443 ||||||||||||||||| |||||||| |||||| Sbjct: 93440 ctgagtggtggaggcagtgtgcctgctcctcag 93472 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 315 cggatgactcttgccgaaaagatcggccagatgactcagat 355 |||||||| || || || ||||||||||||||||| ||||| Sbjct: 124450 cggatgacgctcgcggagaagatcggccagatgacgcagat 124490
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 3e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 260 caagtacaaggatccgaaccagcctctcgccgttcgcatcaaggatctgcttggccggat 319 |||||| ||||||||||| ||||| || | ||||| ||||||||||||| |||||||| Sbjct: 30653041 caagtataaggatccgaagcagcccgtctctgttcgtgtcaaggatctgctcggccggat 30653100 Query: 320 gactcttgccgaaaagatcggccagatgactcagattgagagggtgaatgccacggc 376 |||||| || || ||||| ||||||||||| || || ||||||| |||||||||||| Sbjct: 30653101 gactctcgctgagaagattggccagatgacccaaatcgagagggagaatgccacggc 30653157 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 411 ctgagtggtggaggcagcgtgcctgcacctcag 443 ||||||||||||||||| |||||||| |||||| Sbjct: 30653289 ctgagtggtggaggcagtgtgcctgctcctcag 30653321 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 315 cggatgactcttgccgaaaagatcggccagatgactcagat 355 |||||||| || || || ||||||||||||||||| ||||| Sbjct: 30684299 cggatgacgctcgcggagaagatcggccagatgacgcagat 30684339
>ref|NM_114571.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT3G47040 mRNA, complete cds Length = 1911 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 330 gaaaagatcggccagatgactcagat 355 |||||||||||||||||||||||||| Sbjct: 94 gaaaagatcggccagatgactcagat 119
>emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome 3, BAC clone F13I12 Length = 140680 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 330 gaaaagatcggccagatgactcagat 355 |||||||||||||||||||||||||| Sbjct: 44440 gaaaagatcggccagatgactcagat 44415 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Minus Query: 315 cggatgactcttgccgaaaagatcggccagatgact 350 ||||||||||| || ||||| ||||||||||||||| Sbjct: 48207 cggatgactctggctgaaaaaatcggccagatgact 48172
>ref|NM_114572.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT3G47050 mRNA, complete cds Length = 1928 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 315 cggatgactcttgccgaaaagatcggccagatgact 350 ||||||||||| || ||||| ||||||||||||||| Sbjct: 111 cggatgactctggctgaaaaaatcggccagatgact 146
>gb|AY335818.1| Gossypium hirsutum beta-D-glucosidase mRNA, complete cds Length = 2071 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 316 ggatgactcttgccgaaaagatcggccagatgactcagattgag 359 |||||||| | || |||||||| ||||| ||||||||||||||| Sbjct: 235 ggatgactttggctgaaaagattggccaaatgactcagattgag 278
>ref|NM_191428.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1992 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 316 ggatgactcttgccgaaaagatcggccagatgactcagattga 358 ||||||||||||| ||||| || ||||| ||||| |||||||| Sbjct: 134 ggatgactcttgcagaaaaaattggccaaatgacacagattga 176
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Minus Query: 316 ggatgactcttgccgaaaagatcggccagatgactcagattga 358 ||||||||||||| ||||| || ||||| ||||| |||||||| Sbjct: 32578017 ggatgactcttgcagaaaaaattggccaaatgacacagattga 32577975
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Minus Query: 316 ggatgactcttgccgaaaagatcggccagatgactcagattga 358 ||||||||||||| ||||| || ||||| ||||| |||||||| Sbjct: 40812 ggatgactcttgcagaaaaaattggccaaatgacacagattga 40770
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Minus Query: 316 ggatgactcttgccgaaaagatcggccagatgactcagattga 358 ||||||||||||| ||||| || ||||| ||||| |||||||| Sbjct: 165538 ggatgactcttgcagaaaaaattggccaaatgacacagattga 165496
>dbj|AK066300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060A09, full insert sequence Length = 2670 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 316 ggatgactcttgccgaaaagatcggccagatgactcagattga 358 ||||||||||||| ||||| || ||||| ||||| |||||||| Sbjct: 467 ggatgactcttgcagaaaaaattggccaaatgacacagattga 509
>dbj|AB017502.1| Nicotiana tabacum mRNA for beta-D-glucan exohydrolase, complete cds Length = 2250 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 316 ggatgactcttgccgaaaagatcggccagatgactcagattgagag 361 ||||||| |||| || ||||| || |||||||||||||||||||| Sbjct: 197 ggatgacacttgaggagaagattggtcagatgactcagattgagag 242
>ref|XM_464008.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1947 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 393 tacttcataggcagcgtgctgagtggtggaggcagcgtgcc 433 |||||||| || ||||||||||| || || ||||||||||| Sbjct: 262 tacttcattgggagcgtgctgagcggcggcggcagcgtgcc 302
>ref|XM_469757.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2192 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 315 cggatgactcttgccgaaaagatcggccagatgactcagat 355 |||||||| || || || ||||||||||||||||| ||||| Sbjct: 286 cggatgacgctcgcggagaagatcggccagatgacgcagat 326
>gb|AC123924.4| Mus musculus BAC clone RP24-292A3 from chromosome 16, complete sequence Length = 159639 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 86 agctctctcacttcctcccccctccttcc 114 ||||||||| || |||||||||||||||| Sbjct: 2417 agctctctccctccctcccccctccttcc 2445
>gb|AC161372.2| Mus musculus BAC clone RP23-326G14 from chromosome 16, complete sequence Length = 208994 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 86 agctctctcacttcctcccccctccttcc 114 ||||||||| || |||||||||||||||| Sbjct: 82636 agctctctccctccctcccccctccttcc 82608
>dbj|AK073110.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023H22, full insert sequence Length = 2424 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 315 cggatgactcttgccgaaaagatcggccagatgactcagat 355 |||||||| || || || ||||||||||||||||| ||||| Sbjct: 499 cggatgacgctcgcggagaagatcggccagatgacgcagat 539
>gb|AY103736.1| Zea mays PCO061864 mRNA sequence Length = 2767 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 315 cggatgactcttgccgaaaagatcggccagatgactcagat 355 |||||||| || ||||| ||| ||||||||||||| ||||| Sbjct: 777 cggatgacgctggccgagaaggtcggccagatgacgcagat 817
>gb|AF064707.1|AF064707 Zea mays exhydrolase II mRNA, complete cds Length = 2231 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 315 cggatgactcttgccgaaaagatcggccagatgactcagat 355 |||||||| || ||||| ||| ||||||||||||| ||||| Sbjct: 252 cggatgacgctggccgagaaggtcggccagatgacgcagat 292
>gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, complete sequence Length = 199727 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 ctctcttctcctcatgttct 228 |||||||||||||||||||| Sbjct: 69309 ctctcttctcctcatgttct 69328
>gb|AC093363.12| Mus musculus chromosome 7, clone RP23-60O3, complete sequence Length = 254081 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 ggaagagaaagaagtgctgttagg 57 ||||||| |||||||||||||||| Sbjct: 86172 ggaagagcaagaagtgctgttagg 86195
>gb|AC141927.3| Mus musculus BAC clone RP23-237F16 from chromosome 6, complete sequence Length = 186452 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tctctcacttcctcccccctcctt 112 |||||| ||||||||||||||||| Sbjct: 156112 tctctctcttcctcccccctcctt 156089
>gb|AC116677.11| Mus musculus chromosome 3, clone RP23-111M12, complete sequence Length = 214206 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ctcacttcctcccccctcct 111 |||||||||||||||||||| Sbjct: 55600 ctcacttcctcccccctcct 55619
>gb|AC159208.2| Mus musculus BAC clone RP23-152K15 from chromosome 13, complete sequence Length = 195714 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 tctcacttcctcccccctccttcc 114 |||| ||||||||||||||||||| Sbjct: 13740 tctcccttcctcccccctccttcc 13717
>gb|AC157780.9| Mus musculus chromosome 3, clone RP23-331L5, complete sequence Length = 184569 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ctcacttcctcccccctcct 111 |||||||||||||||||||| Sbjct: 174579 ctcacttcctcccccctcct 174598
>gb|AC079789.7| Homo sapiens BAC clone RP11-475B2 from 4, complete sequence Length = 198586 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 tcttctcctcatgttctgct 231 |||||||||||||||||||| Sbjct: 146294 tcttctcctcatgttctgct 146313
>gb|AC034176.8| Homo sapiens BAC clone RP11-755F5 from 4, complete sequence Length = 193100 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 agggtataaataccactgcc 74 |||||||||||||||||||| Sbjct: 137991 agggtataaataccactgcc 138010
>gb|AC068700.5| Homo sapiens chromosome 8, clone RP11-594N15, complete sequence Length = 182860 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ggggaagcaattttgcaagg 134 |||||||||||||||||||| Sbjct: 75536 ggggaagcaattttgcaagg 75517
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 cgaaaagatcggccagatga 348 |||||||||||||||||||| Sbjct: 427887 cgaaaagatcggccagatga 427906
>gb|AC009088.9| Homo sapiens chromosome 16 clone RP11-388M20, complete sequence Length = 127769 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 tctctcacttcctcccccctcctt 112 |||||| ||||||||||||||||| Sbjct: 89097 tctctcccttcctcccccctcctt 89120
>emb|BX005108.8| Zebrafish DNA sequence from clone CH211-268B13 in linkage group 9, complete sequence Length = 171835 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 tcacctctcttctcctcatgttct 228 ||||||||||||||||| |||||| Sbjct: 153807 tcacctctcttctcctcttgttct 153784
>dbj|BS000046.1| Pan troglodytes chromosome 22 clone:PTB-042H12, map 22, complete sequences Length = 150162 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 acctctcttctcctcatgtt 226 |||||||||||||||||||| Sbjct: 19596 acctctcttctcctcatgtt 19577
>emb|AL160211.2|CNS01RGV Human chromosome 14 DNA sequence BAC R-134J10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164514 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gaagagaaagaagtgctgtt 54 |||||||||||||||||||| Sbjct: 43432 gaagagaaagaagtgctgtt 43451
>gb|AC152961.2| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 227467 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 tctctcacttcctcccccctcctt 112 |||||| ||||||||||||||||| Sbjct: 194524 tctctctcttcctcccccctcctt 194547
>dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, section 18/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 acctctcttctcctcatgtt 226 |||||||||||||||||||| Sbjct: 50434 acctctcttctcctcatgtt 50415
>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence Length = 174902 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ctctcttctcctcatgttct 228 |||||||||||||||||||| Sbjct: 54426 ctctcttctcctcatgttct 54407
>gb|AC146617.3| Mus musculus BAC clone RP23-14M15 from 14, complete sequence Length = 221015 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 gtggtggaggcagcgtgcct 434 |||||||||||||||||||| Sbjct: 182216 gtggtggaggcagcgtgcct 182235
>emb|AL133239.4|CNS01DUC Human chromosome 14 DNA sequence BAC R-71I8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 131637 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gaagagaaagaagtgctgtt 54 |||||||||||||||||||| Sbjct: 128564 gaagagaaagaagtgctgtt 128583
>dbj|AP001538.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B853K11, LL56-APP region, complete sequence Length = 174019 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 acctctcttctcctcatgtt 226 |||||||||||||||||||| Sbjct: 59223 acctctcttctcctcatgtt 59204 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,704,270 Number of Sequences: 3902068 Number of extensions: 3704270 Number of successful extensions: 73914 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73750 Number of HSP's gapped (non-prelim): 160 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
