ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast71c12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 3e-06 Identities = 136/165 (82%), Gaps = 16/165 (9%) Strand = Plus / Minus Query: 28 ggccgatgaccgcaccaccaga----gaccgcggcca-ctcggaaaaaacccggcggcga 82 ||||||||||||||||||| || ||||||||||| ||||| || | |||||||||| Sbjct: 26085845 ggccgatgaccgcaccacccgatcgagaccgcggccatctcgggaaca--ccggcggcga 26085788 Query: 83 tgaggaggccc-ggcccttggcgcacacctgttctcccgagcggcggcagcg----tcgg 137 ||||||||||| |||||||||||| || || ||||||||||||| ||| |||| Sbjct: 26085787 tgaggaggccccggcccttggcgcggacgcgtctccccgagcggcggccgcgcgcgtcgg 26085728 Query: 138 atccctccgcct-cgcggggccagccctccc---gtccgcgccgc 178 | |||||||||| |||||||||| ||||||| ||||||||||| Sbjct: 26085727 aaccctccgccttcgcggggccatccctccccccgtccgcgccgc 26085683 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 aacccggcggcgatgaggagg 90 ||||||||||||||||||||| Sbjct: 20001243 aacccggcggcgatgaggagg 20001223 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgc 188 ||||||||||||||||||| Sbjct: 3009653 ccgcgccgcgccgcgacgc 3009635
>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062J02 Length = 151636 Score = 60.0 bits (30), Expect = 3e-06 Identities = 136/165 (82%), Gaps = 16/165 (9%) Strand = Plus / Minus Query: 28 ggccgatgaccgcaccaccaga----gaccgcggcca-ctcggaaaaaacccggcggcga 82 ||||||||||||||||||| || ||||||||||| ||||| || | |||||||||| Sbjct: 65090 ggccgatgaccgcaccacccgatcgagaccgcggccatctcgggaaca--ccggcggcga 65033 Query: 83 tgaggaggccc-ggcccttggcgcacacctgttctcccgagcggcggcagcg----tcgg 137 ||||||||||| |||||||||||| || || ||||||||||||| ||| |||| Sbjct: 65032 tgaggaggccccggcccttggcgcggacgcgtctccccgagcggcggccgcgcgcgtcgg 64973 Query: 138 atccctccgcct-cgcggggccagccctccc---gtccgcgccgc 178 | |||||||||| |||||||||| ||||||| ||||||||||| Sbjct: 64972 aaccctccgccttcgcggggccatccctccccccgtccgcgccgc 64928
>dbj|AK120334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059I04, full insert sequence Length = 4436 Score = 60.0 bits (30), Expect = 3e-06 Identities = 136/165 (82%), Gaps = 16/165 (9%) Strand = Plus / Plus Query: 28 ggccgatgaccgcaccaccaga----gaccgcggcca-ctcggaaaaaacccggcggcga 82 ||||||||||||||||||| || ||||||||||| ||||| || | |||||||||| Sbjct: 96 ggccgatgaccgcaccacccgatcgagaccgcggccatctcgggaaca--ccggcggcga 153 Query: 83 tgaggaggccc-ggcccttggcgcacacctgttctcccgagcggcggcagcg----tcgg 137 ||||||||||| |||||||||||| || || ||||||||||||| ||| |||| Sbjct: 154 tgaggaggccccggcccttggcgcggacgcgtctccccgagcggcggccgcgcgcgtcgg 213 Query: 138 atccctccgcct-cgcggggccagccctccc---gtccgcgccgc 178 | |||||||||| |||||||||| ||||||| ||||||||||| Sbjct: 214 aaccctccgccttcgcggggccatccctccccccgtccgcgccgc 258
>dbj|AK109473.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-129-A12, full insert sequence Length = 1258 Score = 60.0 bits (30), Expect = 3e-06 Identities = 136/165 (82%), Gaps = 16/165 (9%) Strand = Plus / Plus Query: 28 ggccgatgaccgcaccaccaga----gaccgcggcca-ctcggaaaaaacccggcggcga 82 ||||||||||||||||||| || ||||||||||| ||||| || | |||||||||| Sbjct: 100 ggccgatgaccgcaccacccgatcgagaccgcggccatctcgggaaca--ccggcggcga 157 Query: 83 tgaggaggccc-ggcccttggcgcacacctgttctcccgagcggcggcagcg----tcgg 137 ||||||||||| |||||||||||| || || ||||||||||||| ||| |||| Sbjct: 158 tgaggaggccccggcccttggcgcggacgcgtctccccgagcggcggccgcgcgcgtcgg 217 Query: 138 atccctccgcct-cgcggggccagccctccc---gtccgcgccgc 178 | |||||||||| |||||||||| ||||||| ||||||||||| Sbjct: 218 aaccctccgccttcgcggggccatccctccccccgtccgcgccgc 262
>dbj|AK072681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138J06, full insert sequence Length = 1224 Score = 60.0 bits (30), Expect = 3e-06 Identities = 136/165 (82%), Gaps = 16/165 (9%) Strand = Plus / Plus Query: 28 ggccgatgaccgcaccaccaga----gaccgcggcca-ctcggaaaaaacccggcggcga 82 ||||||||||||||||||| || ||||||||||| ||||| || | |||||||||| Sbjct: 99 ggccgatgaccgcaccacccgatcgagaccgcggccatctcgggaaca--ccggcggcga 156 Query: 83 tgaggaggccc-ggcccttggcgcacacctgttctcccgagcggcggcagcg----tcgg 137 ||||||||||| |||||||||||| || || ||||||||||||| ||| |||| Sbjct: 157 tgaggaggccccggcccttggcgcggacgcgtctccccgagcggcggccgcgcgcgtcgg 216 Query: 138 atccctccgcct-cgcggggccagccctccc---gtccgcgccgc 178 | |||||||||| |||||||||| ||||||| ||||||||||| Sbjct: 217 aaccctccgccttcgcggggccatccctccccccgtccgcgccgc 261
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.16 Identities = 22/22 (100%) Strand = Plus / Plus Query: 170 ccgcgccgcgccgcgacgccgg 191 |||||||||||||||||||||| Sbjct: 389932 ccgcgccgcgccgcgacgccgg 389953
>gb|DQ397869.1| Cenarchaeum symbiosum clone C04C05, complete sequence Length = 40287 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 cgcccgccgtggccgatgacc 38 ||||||||||||||||||||| Sbjct: 31437 cgcccgccgtggccgatgacc 31457
>gb|DQ397578.1| Cenarchaeum symbiosum clone C13F12, complete sequence Length = 39464 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 cgcccgccgtggccgatgacc 38 ||||||||||||||||||||| Sbjct: 1165 cgcccgccgtggccgatgacc 1145
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 ccgcgccgcgccgcgacgccg 190 ||||||||||||||||||||| Sbjct: 16123897 ccgcgccgcgccgcgacgccg 16123917 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgc 188 ||||||||||||||||||| Sbjct: 19900168 ccgcgccgcgccgcgacgc 19900150
>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1018E06 Length = 178499 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 aacccggcggcgatgaggagg 90 ||||||||||||||||||||| Sbjct: 139583 aacccggcggcgatgaggagg 139563
>dbj|AP001731.1| Homo sapiens genomic DNA, chromosome 21q, section 75/105 Length = 340000 Score = 42.1 bits (21), Expect = 0.64 Identities = 24/25 (96%) Strand = Plus / Minus Query: 77 cggcgatgaggaggcccggcccttg 101 |||| |||||||||||||||||||| Sbjct: 213819 cggcaatgaggaggcccggcccttg 213795
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 ccgcgccgcgccgcgacgccg 190 ||||||||||||||||||||| Sbjct: 16213919 ccgcgccgcgccgcgacgccg 16213939 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgc 188 ||||||||||||||||||| Sbjct: 20185147 ccgcgccgcgccgcgacgc 20185129
>dbj|AP000163.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 15/16, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 0.64 Identities = 24/25 (96%) Strand = Plus / Minus Query: 77 cggcgatgaggaggcccggcccttg 101 |||| |||||||||||||||||||| Sbjct: 236 cggcaatgaggaggcccggcccttg 212
>dbj|AP000021.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 12/13 Length = 100000 Score = 42.1 bits (21), Expect = 0.64 Identities = 24/25 (96%) Strand = Plus / Minus Query: 77 cggcgatgaggaggcccggcccttg 101 |||| |||||||||||||||||||| Sbjct: 34632 cggcaatgaggaggcccggcccttg 34608
>dbj|AP001422.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:S166, LB7T-ERG region, complete sequence Length = 83533 Score = 42.1 bits (21), Expect = 0.64 Identities = 24/25 (96%) Strand = Plus / Minus Query: 77 cggcgatgaggaggcccggcccttg 101 |||| |||||||||||||||||||| Sbjct: 51652 cggcaatgaggaggcccggcccttg 51628
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cgcgccgcgccgcgacgccg 190 |||||||||||||||||||| Sbjct: 63124 cgcgccgcgccgcgacgccg 63143
>gb|AC152062.6| Mus musculus BAC clone RP23-341K9 from chromosome 10, complete sequence Length = 240781 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tccgcccgccgtggccgatg 35 |||||||||||||||||||| Sbjct: 37873 tccgcccgccgtggccgatg 37854
>ref|NM_013595.1| Mus musculus methyl-CpG binding domain protein 3 (Mbd3), mRNA Length = 1589 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tccgcccgccgtggccgatg 35 |||||||||||||||||||| Sbjct: 234 tccgcccgccgtggccgatg 215
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cgcgccgcgccgcgacgccg 190 |||||||||||||||||||| Sbjct: 5705 cgcgccgcgccgcgacgccg 5724
>gb|BC038264.1| Mus musculus methyl-CpG binding domain protein 3, mRNA (cDNA clone MGC:46876 IMAGE:5250237), complete cds Length = 1405 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tccgcccgccgtggccgatg 35 |||||||||||||||||||| Sbjct: 131 tccgcccgccgtggccgatg 112
>ref|XM_535007.2| PREDICTED: Canis familiaris similar to glutathione-S-transferase omega 1, transcript variant 1 (LOC477813), mRNA Length = 857 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 ccgtccgcgccgcgccgcga 185 |||||||||||||||||||| Sbjct: 22 ccgtccgcgccgcgccgcga 41
>ref|XM_858871.1| PREDICTED: Canis familiaris similar to glutathione-S-transferase omega 1, transcript variant 3 (LOC477813), mRNA Length = 662 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 ccgtccgcgccgcgccgcga 185 |||||||||||||||||||| Sbjct: 17 ccgtccgcgccgcgccgcga 36
>gb|AY844348.1| Scinax nasicus 28S ribosomal RNA gene, partial sequence Length = 761 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 ggccagccctcccgtccgcg 174 |||||||||||||||||||| Sbjct: 199 ggccagccctcccgtccgcg 218
>emb|AL139324.19| Human DNA sequence from clone RP11-309I15 on chromosome 13 Contains part of a novel gene and a pseudogene similar to part of RAN binding protein 7 (RANBP7), complete sequence Length = 116131 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tggcgcacacctgttctccc 119 |||||||||||||||||||| Sbjct: 26244 tggcgcacacctgttctccc 26263
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgccggct 193 ||||||||||||||| |||||||| Sbjct: 312252 ccgcgccgcgccgcgccgccggct 312229
>emb|BX294148.1| Pirellula sp. strain 1 complete genome; segment 16/24 Length = 294850 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 cgtggccgatgaccgcacca 44 |||||||||||||||||||| Sbjct: 237211 cgtggccgatgaccgcacca 237192
>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the 5' end of the gene for a novel protein (330000P08Rik) (Luc7a), the gene for a novel protein (5530600A18Rik), the Abcc3 gene for ATP-binding cassette sub-family C (CFTR/MRP) member 3, the Cacna1g gene for calcium channel voltage-dependent T type alpha 1G subunit, the 3' end of the Tisp78 gene for transcript increased in spermiogenesis 78 and one CpG island, complete sequence Length = 161978 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 gtcggatccctccgcctcgc 152 |||||||||||||||||||| Sbjct: 10172 gtcggatccctccgcctcgc 10191
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cgcgccgcgccgcgacgccg 190 |||||||||||||||||||| Sbjct: 20749900 cgcgccgcgccgcgacgccg 20749919
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ctcccgtccgcgccgcgccg 182 |||||||||||||||||||| Sbjct: 2303091 ctcccgtccgcgccgcgccg 2303110 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgccggc 192 ||||| ||||||||||||||||| Sbjct: 4539858 ccgcggcgcgccgcgacgccggc 4539836 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgccggc 192 ||||||||||||||| ||||||| Sbjct: 907445 ccgcgccgcgccgcggcgccggc 907423
>dbj|AB097904.1| Streptomyces carzinostaticus DNA, biosynthetic gene cluster for antitumor antibiotic Neocarzilin, complete and partial cds Length = 33079 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 ccgcgccgcgccgcgacgccggct 193 ||||||||| |||||||||||||| Sbjct: 9960 ccgcgccgccccgcgacgccggct 9983
>dbj|BS000128.1| Pan troglodytes chromosome 22 clone:RP43-001C14, map 22, complete sequences Length = 127477 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 atgaggaggcccggcccttg 101 |||||||||||||||||||| Sbjct: 40579 atgaggaggcccggcccttg 40560
>dbj|BS000159.1| Pan troglodytes chromosome 22 clone:PTB-042K04, map 22, complete sequences Length = 148367 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 atgaggaggcccggcccttg 101 |||||||||||||||||||| Sbjct: 20109 atgaggaggcccggcccttg 20090
>emb|AL954847.17| Zebrafish DNA sequence from clone DKEY-68G8 in linkage group 13, complete sequence Length = 278040 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ccgctccgcccgccgtggcc 31 |||||||||||||||||||| Sbjct: 182174 ccgctccgcccgccgtggcc 182155
>dbj|AK099814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L01, full insert sequence Length = 1912 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cgcgccgcgccgcgacgccg 190 |||||||||||||||||||| Sbjct: 46 cgcgccgcgccgcgacgccg 65
>gb|AF072248.1|AF072248 Mus musculus methyl-CpG binding domain-containing protein MBD3 (Mbd3) mRNA, complete cds Length = 1589 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tccgcccgccgtggccgatg 35 |||||||||||||||||||| Sbjct: 234 tccgcccgccgtggccgatg 215
>gb|AF120995.1|AF120995 Mus musculus domesticus methyl-CpG binding domain-containing protein 3 (Mbd3) gene, complete cds Length = 10325 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tccgcccgccgtggccgatg 35 |||||||||||||||||||| Sbjct: 387 tccgcccgccgtggccgatg 368
>gb|AY494025.1| Brunia macrocephala internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 609 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 171 cgcgccgcgccgcgacgcc 189 ||||||||||||||||||| Sbjct: 534 cgcgccgcgccgcgacgcc 552
>gb|AC116505.13| Mus musculus chromosome 5, clone RP24-302O2, complete sequence Length = 178695 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 97 ccttggcgcacacctgttctccc 119 ||||||| ||||||||||||||| Sbjct: 113019 ccttggctcacacctgttctccc 113041
>ref|NM_185601.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 453 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 170 ccgcgccgcgccgcgacgc 188 ||||||||||||||||||| Sbjct: 134 ccgcgccgcgccgcgacgc 152
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 ccaccagagaccgcggcca 60 ||||||||||||||||||| Sbjct: 1354674 ccaccagagaccgcggcca 1354692 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ggcagcgtcggatccctcc 145 ||||||||||||||||||| Sbjct: 1014866 ggcagcgtcggatccctcc 1014848
>ref|XM_465684.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1745 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgccggc 192 |||||||||||||| |||||||| Sbjct: 865 ccgcgccgcgccgccacgccggc 843
>ref|XM_472916.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 165 cccgtccgcgccgcgccgc 183 ||||||||||||||||||| Sbjct: 1221 cccgtccgcgccgcgccgc 1203
>ref|XM_472601.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 312 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 169 tccgcgccgcgccgcgacgccgg 191 |||||||||||||||| |||||| Sbjct: 128 tccgcgccgcgccgcgtcgccgg 106
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 38.2 bits (19), Expect = 10.0 Identities = 25/27 (92%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgccggcttgg 196 ||||||||||| ||| ||||||||||| Sbjct: 2864276 ccgcgccgcgcggcgccgccggcttgg 2864250
>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22, complete sequence Length = 177557 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgc 188 ||||||||||||||||||| Sbjct: 77235 ccgcgccgcgccgcgacgc 77217
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 166 ccgtccgcgccgcgccgcgacgc 188 |||||| |||||||||||||||| Sbjct: 2397125 ccgtccccgccgcgccgcgacgc 2397147
>emb|CR730300.2|CNS0GQG1 Tetraodon nigroviridis full-length cDNA Length = 1162 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 cgctccgcccgccgtggcc 31 ||||||||||||||||||| Sbjct: 1040 cgctccgcccgccgtggcc 1022
>emb|X59734.1|XL28SR X.laevis 28S ribosomal RNA gene for 28S rRNA Length = 7634 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 165 cccgtccgcgccgcgccgc 183 ||||||||||||||||||| Sbjct: 4405 cccgtccgcgccgcgccgc 4423
>emb|X73953.1|SREGLS S.rochei eglS gene Length = 1470 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 161 ccctcccgtccgcgccgcg 179 ||||||||||||||||||| Sbjct: 1450 ccctcccgtccgcgccgcg 1468
>emb|X55394.3|MTMMOCLU Methylosinus trichosporium gene cluster for methane monooxygenase (MMO) with mmoR, mmoG, mmoX, mmoY, mmoB, mmoZ mmoD and mmoC genes Length = 10144 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 171 cgcgccgcgccgcgacgcc 189 ||||||||||||||||||| Sbjct: 1106 cgcgccgcgccgcgacgcc 1124
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 agcggcggcagcgtcggat 139 ||||||||||||||||||| Sbjct: 153166 agcggcggcagcgtcggat 153184
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 38.2 bits (19), Expect = 10.0 Identities = 25/27 (92%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgccggcttgg 196 ||||||||||| ||| ||||||||||| Sbjct: 2594451 ccgcgccgcgcggcgccgccggcttgg 2594425
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 169 tccgcgccgcgccgcgacg 187 ||||||||||||||||||| Sbjct: 95093 tccgcgccgcgccgcgacg 95075
>emb|AL606991.3|OSJN00113 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032B23, complete sequence Length = 120640 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 119 cgagcggcggcagcgtcggatcc 141 ||||||||||||||| ||||||| Sbjct: 104494 cgagcggcggcagcgacggatcc 104472
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 165 cccgtccgcgccgcgccgc 183 ||||||||||||||||||| Sbjct: 59023 cccgtccgcgccgcgccgc 59041
>emb|CR762482.6| Zebrafish DNA sequence from clone DKEY-237N21 in linkage group 13, complete sequence Length = 178297 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 ccgctccgcccgccgtggc 30 ||||||||||||||||||| Sbjct: 95865 ccgctccgcccgccgtggc 95883
>dbj|AK020080.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030462H23 product:hypothetical protein, full insert sequence Length = 1179 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 116 tcccgagcggcggcagcgtcgga 138 |||||||||||||||| |||||| Sbjct: 228 tcccgagcggcggcagggtcgga 250
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 cccgagcggcggcagcgtc 135 ||||||||||||||||||| Sbjct: 2146717 cccgagcggcggcagcgtc 2146735
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 165 cccgtccgcgccgcgccgc 183 ||||||||||||||||||| Sbjct: 24062044 cccgtccgcgccgcgccgc 24062062 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 169 tccgcgccgcgccgcgacgccgg 191 |||||||||||||||| |||||| Sbjct: 21838409 tccgcgccgcgccgcgtcgccgg 21838387 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 119 cgagcggcggcagcgtcggatcc 141 ||||||||||||||| ||||||| Sbjct: 10009544 cgagcggcggcagcgacggatcc 10009522
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24, complete sequence Length = 150503 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 166 ccgtccgcgccgcgccgcgacgc 188 |||||| |||||||||||||||| Sbjct: 113967 ccgtccccgccgcgccgcgacgc 113989
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 170 ccgcgccgcgccgcgacgccggc 192 ||||||||||||||| ||||||| Sbjct: 19625510 ccgcgccgcgccgcgccgccggc 19625532
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 166 ccgtccgcgccgcgccgcgacgc 188 |||||| |||||||||||||||| Sbjct: 2397235 ccgtccccgccgcgccgcgacgc 2397257
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 170 ccgcgccgcgccgcgacgccggc 192 |||||||||||||| |||||||| Sbjct: 16778950 ccgcgccgcgccgccacgccggc 16778972
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 gcggcgatgaggaggcccg 94 ||||||||||||||||||| Sbjct: 74345 gcggcgatgaggaggcccg 74363
>emb|X02995.1|XLRN01 Xenopus laevis genes for 18S, 5.8S and 28S ribosomal RNAs Length = 8153 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 165 cccgtccgcgccgcgccgc 183 ||||||||||||||||||| Sbjct: 4700 cccgtccgcgccgcgccgc 4718
>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01, complete sequence Length = 127713 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 169 tccgcgccgcgccgcgacgccgg 191 |||||||||||||||| |||||| Sbjct: 23010 tccgcgccgcgccgcgtcgccgg 22988
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 68 aaaacccggcggcgatgaggagg 90 |||||||||||||||||| |||| Sbjct: 1431578 aaaacccggcggcgatgacgagg 1431556
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 agcggcggcagcgtcggat 139 ||||||||||||||||||| Sbjct: 7274850 agcggcggcagcgtcggat 7274868
>dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0702F05 Length = 145018 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgc 188 ||||||||||||||||||| Sbjct: 97602 ccgcgccgcgccgcgacgc 97584
>dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0091C16 Length = 162527 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 170 ccgcgccgcgccgcgacgccggc 192 |||||||||||||| |||||||| Sbjct: 156005 ccgcgccgcgccgccacgccggc 156027
>dbj|AP004302.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1122_H01 Length = 103030 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 170 ccgcgccgcgccgcgacgccggc 192 |||||||||||||| |||||||| Sbjct: 27192 ccgcgccgcgccgccacgccggc 27214
>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0042B03 Length = 167669 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 170 ccgcgccgcgccgcgacgccggc 192 ||||||||||||||| ||||||| Sbjct: 101070 ccgcgccgcgccgcgccgccggc 101092
>dbj|AK103708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136O19, full insert sequence Length = 1745 Score = 38.2 bits (19), Expect = 10.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 170 ccgcgccgcgccgcgacgccggc 192 |||||||||||||| |||||||| Sbjct: 865 ccgcgccgcgccgccacgccggc 843
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgagcggcggcagcgtcgg 137 ||||||||||||||||||| Sbjct: 76841 cgagcggcggcagcgtcgg 76859
>gb|AY110365.1| Zea mays CL38215_1 mRNA sequence Length = 607 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 gaccgcaccaccagagacc 53 ||||||||||||||||||| Sbjct: 328 gaccgcaccaccagagacc 310
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 ggcccggcccttggcgcac 107 ||||||||||||||||||| Sbjct: 225822 ggcccggcccttggcgcac 225804
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete sequence Length = 90767 Score = 38.2 bits (19), Expect = 10.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 165 cccgtccgcgccgcgccgc 183 ||||||||||||||||||| Sbjct: 40849 cccgtccgcgccgcgccgc 40867 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,871,798 Number of Sequences: 3902068 Number of extensions: 1871798 Number of successful extensions: 120802 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116525 Number of HSP's gapped (non-prelim): 4262 length of query: 200 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 178 effective length of database: 17,147,199,772 effective search space: 3052201559416 effective search space used: 3052201559416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
