ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast71c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEA29_GOSHI (P13940) Late embryogenesis abundant protein D-29 (L... 35 0.098
2SYFB_SILPO (Q5LMS3) Phenylalanyl-tRNA synthetase beta chain (EC ... 32 0.83
3ILVD_ZYMMO (Q5NLJ4) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 31 1.4
4SYD_CORDI (Q6NGZ4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 29 4.1
5MIER1_XENLA (Q7T105) Mesoderm induction early response protein 1... 29 5.4
6MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupl... 28 9.2
7Y1570_METJA (Q58965) Hypothetical protein MJ1570 28 9.2

>LEA29_GOSHI (P13940) Late embryogenesis abundant protein D-29 (LEA D-29)|
          Length = 302

 Score = 34.7 bits (78), Expect = 0.098
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +3

Query: 255 ESWAGWAKDKISEGLGLDKISEGLGLKHHADEEEAARKAGHNVKSARETAQHAASETG 428
           ESW  WAK+KISEGLG  +  +  G       E+A           ++  Q  AS  G
Sbjct: 95  ESWTEWAKEKISEGLGFKQDDDPKG-----SVEKAFDSVADTATKTKDKLQDMASGAG 147



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>SYFB_SILPO (Q5LMS3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 798

 Score = 31.6 bits (70), Expect = 0.83
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 270 WAKDKISEGLGLDKISEGL---GLKHHADEEEAARKAGHNVKSARETAQH 410
           W KD +     +D+I+E L   GL+    E  AAR AG  +   +  +QH
Sbjct: 7   WLKDHLDTTASVDEIAEALTDLGLEVEGIENPAARLAGFTLAHVKSASQH 56



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>ILVD_ZYMMO (Q5NLJ4) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 618

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 285 ISEGLGLDKISEGLGLKHHADEEEAARKAGHNV 383
           ++E LGL     G  L  H+D E+  RKAGH +
Sbjct: 207 LTEALGLSFPGNGSMLATHSDREQLFRKAGHTI 239



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>SYD_CORDI (Q6NGZ4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 601

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +3

Query: 222 DGAEVAPGKEEESWAGWAKDKISEGLGLDKISEGLGL----KHHADEEEAARKAGHNVKS 389
           DG    P ++ ++W  WAK + ++GL    + E   L      +  +EE A  A H    
Sbjct: 324 DGGASQPRRQLDAWQEWAKQRGAKGLAYILVGENGELTGPVSKNITDEERAGIAAHVGAK 383

Query: 390 ARETAQHAASET 425
             +    AA ET
Sbjct: 384 PGDCIFFAAGET 395



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>MIER1_XENLA (Q7T105) Mesoderm induction early response protein 1 (Mi-er1)|
           (Xmi-er1) (Early response 1) (Er1)
          Length = 495

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
 Frame = +3

Query: 273 AKDKISEGLGLDKISEGLGLKHHA-----------DEEEAARKAGHNVKSARE 398
           A  +  E  GLD I EG  +K +            D EEA R+   NVK+ARE
Sbjct: 222 ASRRTCEERGLDAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAARE 274



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>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)|
           (H9)
          Length = 613

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 310 LSRPSPSEILSLAHPAHDSSSLPGATSAPS 221
           LS     EI ++AHP  D S LP + S+P+
Sbjct: 535 LSASHCPEIPAIAHPVSDDSDLPESASSPA 564



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>Y1570_METJA (Q58965) Hypothetical protein MJ1570|
          Length = 115

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 255 ESWAGWAKDKISEGLGLDKISEGLGLKHHAD 347
           ++W  W  + ++E +G DK+S   GL H AD
Sbjct: 34  DAWGEWGPEDVAEKVGEDKVS---GLLHLAD 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,136,518
Number of Sequences: 219361
Number of extensions: 344309
Number of successful extensions: 1546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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