ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast71b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPT3_ARATH (Q9FMF5) Root phototropism protein 3 (Non-phototropic... 56 2e-08
2NPH3_ORYSA (Q5KS50) Coleoptile phototropism protein 1 (Non-photo... 46 3e-05
3RPT2_ARATH (Q682S0) Root phototropism protein 2 41 6e-04
4CB027_HUMAN (Q580R0) Protein C2orf27 29 3.2
5PYRG_CHLCV (Q822T2) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga... 28 4.1
6SORC1_HUMAN (Q8WY21) VPS10 domain-containing receptor SorCS1 pre... 28 7.0
7H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC ... 27 9.2
8ZN621_HUMAN (Q6ZSS3) Zinc finger protein 621 27 9.2
9INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1) 27 9.2

>RPT3_ARATH (Q9FMF5) Root phototropism protein 3 (Non-phototropic hypocotyl|
           protein 3)
          Length = 745

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 20/43 (46%), Positives = 36/43 (83%)
 Frame = +1

Query: 94  GEAWFCTTGLPSDVVFEVQDMSFHLHKFPVMSKSRKISRMLAE 222
           G++WF  T +PSD++ ++ DM+FHLHK+P++S+S K++R++ E
Sbjct: 42  GQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYE 84



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>NPH3_ORYSA (Q5KS50) Coleoptile phototropism protein 1 (Non-phototropic|
           hypocotyl 3-like protein) (NPH3-like protein)
          Length = 762

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 17/45 (37%), Positives = 34/45 (75%)
 Frame = +1

Query: 88  RGGEAWFCTTGLPSDVVFEVQDMSFHLHKFPVMSKSRKISRMLAE 222
           R   +W+  + +PSD++ +V D++F+LHK+P++S+S ++SR + E
Sbjct: 38  RRDRSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYE 82



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>RPT2_ARATH (Q682S0) Root phototropism protein 2|
          Length = 593

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +1

Query: 58  SSSAARHGPSRGGEAWFCTTGLPSDVVFEVQDMSFHLHKFPVMSKSRKISRMLAEQDE 231
           SSS AR G       W  +  +P+DVV EV + +F LHKF +++KS  I +++ E  +
Sbjct: 15  SSSLARTGQ------WVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKD 66



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>CB027_HUMAN (Q580R0) Protein C2orf27|
          Length = 203

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 167 RWKLMSCTSNTTSLGS---PVVQNHASPPLDGPCRAADEDDMAGRPSCRC 27
           +WK +S  ++   +     P V+   +P  D P   A E + A  PSCRC
Sbjct: 4   KWKQLSAPASGAEIQRFPVPAVEPVPAPGADSPPGTALELEEAPEPSCRC 53



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>PYRG_CHLCV (Q822T2) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 537

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 106 FCTTGLPSDVVFEVQDMSFHLHKFPVMSKSRKISRMLAEQ 225
           FC   +P   VF V D+   +++ P+M    KIS  + E+
Sbjct: 228 FCN--VPDSAVFNVVDVEHSIYEMPLMLSREKISTFITEK 265



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>SORC1_HUMAN (Q8WY21) VPS10 domain-containing receptor SorCS1 precursor (hSorCS)|
          Length = 1168

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 181 PGTCGDGSSCPAP 143
           PG CG GS CP+P
Sbjct: 29  PGVCGGGSCCPSP 41



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>H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)|
           (HS6ST-3)
          Length = 471

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 173 LWRWKLMSCTSNTTSLGSPVVQNHASPP-LDGPCRAA 66
           ++++   SCTS+ T+LG       A PP + GP R A
Sbjct: 22  MYQYVSPSCTSSCTNLGEQPRAGEAGPPAVPGPARRA 58



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>ZN621_HUMAN (Q6ZSS3) Zinc finger protein 621|
          Length = 439

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 79  GPSRGGEAWFCTTGLPSDVVFEVQDMSFHLHKFPVMSKSRKISR 210
           G S+GGE+W    GL   V+ +       LH+ PV    R +S+
Sbjct: 83  GISQGGESWIKNEGL---VIKQEASEETELHRMPVGGLLRNVSQ 123



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>INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1)|
          Length = 257

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 69  GAARPVQGRRGVVLHHRAAQRRCVRGAGHELPSPQVP 179
           GAARP    RG++     A  RC +G+G   P+P+ P
Sbjct: 15  GAARPHSLPRGMI-----AAARCPQGSGAPEPAPRSP 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,797,852
Number of Sequences: 219361
Number of extensions: 570123
Number of successful extensions: 2045
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2044
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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