ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast71b11 |
|---|---|
| Clone Library Name | barley_pub |
>SC61A_YARLI (P78979) Protein transport protein SEC61 alpha subunit| Length = 471 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/31 (58%), Positives = 24/31 (77%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G R L LV+PF FLPEVQ+ +RK+PF +K+ Sbjct: 3 GVRFLDLVKPFTPFLPEVQAPERKVPFNQKI 33
>SC61A_CANAL (Q9P8E3) Protein transport protein SEC61 alpha subunit| Length = 479 Score = 41.6 bits (96), Expect = 6e-04 Identities = 18/31 (58%), Positives = 25/31 (80%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 GFRVL LV+PF FLPEV + +RK+ F+++V Sbjct: 3 GFRVLDLVKPFSPFLPEVIAPERKVQFQQRV 33
>SC61A_HEMAM (Q8AY34) Protein transport protein Sec61 alpha subunit| Length = 475 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L +++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEVIKPFCAVLPEIQKPERKIQFREKV 31
>SC61A_HARAN (Q7T278) Protein transport protein Sec61 alpha subunit| Length = 475 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L +++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEVIKPFCAVLPEIQKPERKIQFREKV 31
>SC61A_GADOC (Q8AY32) Protein transport protein Sec61 alpha subunit| Length = 475 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L +++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEVIKPFCAVLPEIQKPERKIQFREKV 31
>SC61A_DISMA (Q7T277) Protein transport protein Sec61 alpha subunit| Length = 475 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L +++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEVIKPFCAVLPEIQKPERKIQFREKV 31
>SC61A_BORSA (Q8AY33) Protein transport protein Sec61 alpha subunit| Length = 475 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L +++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEVIKPFCAVLPEIQKPERKIQFREKV 31
>S61A2_ONCMY (Q98SN8) Protein transport protein Sec61 alpha subunit isoform B| Length = 475 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L +++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEVIKPFCAVLPEIQKPERKIQFREKV 31
>S61A2_MOUSE (Q9JLR1) Protein transport protein Sec61 alpha subunit isoform 2| (Sec61 alpha-2) Length = 475 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L +++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEVIKPFCAVLPEIQKPERKIQFREKV 31
>S61A2_HUMAN (Q9H9S3) Protein transport protein Sec61 alpha subunit isoform 2| (Sec61 alpha-2) Length = 475 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L +++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEVIKPFCAVLPEIQKPERKIQFREKV 31
>S61A1_ONCMY (Q98SN9) Protein transport protein Sec61 alpha subunit isoform A| Length = 475 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L +++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEVIKPFCAVLPEIQKPERKIQFREKV 31
>SC61A_PAGBO (Q8AY36) Protein transport protein Sec61 alpha subunit| Length = 475 Score = 40.8 bits (94), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L ++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEFIKPFCAVLPEIQKPERKIQFREKV 31
>SC61A_NOTAN (Q8AY35) Protein transport protein Sec61 alpha subunit| Length = 475 Score = 40.8 bits (94), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L ++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEFIKPFCAVLPEIQKPERKIQFREKV 31
>SC61A_BOVVA (Q8AY31) Protein transport protein Sec61 alpha subunit| Length = 475 Score = 40.8 bits (94), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G + L ++PF A LPE+Q +RKI FREKV Sbjct: 1 GIKFLEFIKPFCAVLPEIQKPERKIQFREKV 31
>SC61A_HALRO (Q25147) Protein transport protein Sec61 alpha subunit| Length = 475 Score = 40.0 bits (92), Expect = 0.002 Identities = 16/31 (51%), Positives = 22/31 (70%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 GF+ L +++PF LPE++ RKI FREKV Sbjct: 2 GFKFLEVIKPFCIILPEIEKPQRKIQFREKV 32
>SC61A_DEBHA (Q6BN08) Protein transport protein SEC61 alpha subunit| Length = 479 Score = 40.0 bits (92), Expect = 0.002 Identities = 16/31 (51%), Positives = 25/31 (80%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 GFRVL LV+PF F+PEV + +RK+ F++++ Sbjct: 3 GFRVLDLVKPFTPFMPEVIAPERKVAFQQRL 33
>SC61A_NEUCR (Q870W0) Protein transport protein SEC61 alpha subunit| Length = 476 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/29 (58%), Positives = 22/29 (75%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 R L LV+PF+ FLPEVQ + KIPF +K+ Sbjct: 5 RFLDLVKPFVPFLPEVQQPETKIPFNQKL 33
>SC61A_SCHPO (P79088) Protein transport protein sec61 alpha subunit| Length = 479 Score = 39.3 bits (90), Expect = 0.003 Identities = 15/29 (51%), Positives = 23/29 (79%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 R L LV+PF FLPE+ + +RK+PF++K+ Sbjct: 5 RFLDLVKPFAPFLPEIAAPERKVPFKQKM 33
>SC61A_HANAN (Q96TW8) Protein transport protein SEC61 alpha subunit| Length = 479 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/30 (53%), Positives = 23/30 (76%) Frame = +3 Query: 117 FRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 FRVL LV+P +LPEV + +RK+PF +K+ Sbjct: 4 FRVLDLVKPLTGYLPEVIAPERKVPFNQKL 33
>SC61A_CANGA (Q6FRY3) Protein transport protein SEC61 alpha subunit| Length = 479 Score = 38.9 bits (89), Expect = 0.004 Identities = 16/29 (55%), Positives = 23/29 (79%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 R+L L +PF AFLPEV S +RK+P+ +K+ Sbjct: 4 RILSLFKPFEAFLPEVISPERKVPYNQKL 32
>S61A1_BRARE (Q90ZM2) Protein transport protein Sec61 alpha subunit isoform A| Length = 475 Score = 38.9 bits (89), Expect = 0.004 Identities = 16/29 (55%), Positives = 22/29 (75%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 + L +++PF A LPE+Q +RKI FREKV Sbjct: 3 KFLEVIKPFCAVLPEIQKPERKIQFREKV 31
>SC61A_PYRSA (P38379) Protein transport protein Sec61 alpha subunit| Length = 494 Score = 38.1 bits (87), Expect = 0.006 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 G R L LV+PF+ LPEV SA +KIP EK+ Sbjct: 5 GVRFLTLVKPFMFALPEVSSATKKIPVNEKL 35
>SC61A_YEAST (P32915) Protein transport protein SEC61 alpha subunit| Length = 480 Score = 37.0 bits (84), Expect = 0.014 Identities = 15/29 (51%), Positives = 23/29 (79%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 RVL L +PF +FLPEV + +RK+P+ +K+ Sbjct: 5 RVLDLFKPFESFLPEVIAPERKVPYNQKL 33
>SC61A_ASHGO (Q752H7) Protein transport protein SEC61 alpha subunit| Length = 480 Score = 37.0 bits (84), Expect = 0.014 Identities = 15/29 (51%), Positives = 23/29 (79%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 R+L L +PF AFLPEV + +RK+P+ +K+ Sbjct: 4 RLLDLFKPFEAFLPEVIAPERKVPYNQKL 32
>S61A2_BRARE (Q90YL4) Protein transport protein Sec61 alpha subunit isoform B| Length = 475 Score = 36.6 bits (83), Expect = 0.018 Identities = 14/29 (48%), Positives = 22/29 (75%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 + L +++PF A LPE+Q +R+I F+EKV Sbjct: 3 KFLEVIKPFCAVLPEIQKPERRIQFKEKV 31
>S61A1_RAT (P61621) Protein transport protein Sec61 alpha subunit isoform 1| (Sec61 alpha-1) Length = 475 Score = 36.6 bits (83), Expect = 0.018 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 + L +++PF LPE+Q +RKI F+EKV Sbjct: 3 KFLEVIKPFCVILPEIQKPERKIQFKEKV 31
>S61A1_PONPY (Q5R5L5) Protein transport protein Sec61 alpha subunit isoform 1| (Sec61 alpha-1) Length = 475 Score = 36.6 bits (83), Expect = 0.018 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 + L +++PF LPE+Q +RKI F+EKV Sbjct: 3 KFLEVIKPFCVILPEIQKPERKIQFKEKV 31
>S61A1_MOUSE (P61620) Protein transport protein Sec61 alpha subunit isoform 1| (Sec61 alpha-1) Length = 475 Score = 36.6 bits (83), Expect = 0.018 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 + L +++PF LPE+Q +RKI F+EKV Sbjct: 3 KFLEVIKPFCVILPEIQKPERKIQFKEKV 31
>S61A1_HUMAN (P61619) Protein transport protein Sec61 alpha subunit isoform 1| (Sec61 alpha-1) Length = 475 Score = 36.6 bits (83), Expect = 0.018 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 + L +++PF LPE+Q +RKI F+EKV Sbjct: 3 KFLEVIKPFCVILPEIQKPERKIQFKEKV 31
>S61A1_CANFA (P38377) Protein transport protein Sec61 alpha subunit isoform 1| (Sec61 alpha-1) Length = 475 Score = 36.6 bits (83), Expect = 0.018 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 + L +++PF LPE+Q +RKI F+EKV Sbjct: 3 KFLEVIKPFCVILPEIQKPERKIQFKEKV 31
>SSH1_YEAST (P38353) Sec sixty-one protein homolog| Length = 490 Score = 35.8 bits (81), Expect = 0.031 Identities = 14/31 (45%), Positives = 22/31 (70%) Frame = +3 Query: 114 GFRVLHLVRPFLAFLPEVQSADRKIPFREKV 206 GFR++ +V+P L LPEV+ K+PF +K+ Sbjct: 3 GFRLIDIVKPILPILPEVELPFEKLPFDDKI 33
>SC61A_KLULA (Q6CPY9) Protein transport protein SEC61 alpha subunit| Length = 480 Score = 35.4 bits (80), Expect = 0.041 Identities = 14/29 (48%), Positives = 23/29 (79%) Frame = +3 Query: 120 RVLHLVRPFLAFLPEVQSADRKIPFREKV 206 RVL L +PF A+LPEV + +R +P+++K+ Sbjct: 4 RVLDLFKPFEAYLPEVIAPERPVPYKQKL 32
>MLO_HORVU (P93766) Protein MLO| Length = 533 Score = 30.4 bits (67), Expect = 1.3 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +2 Query: 26 PS*GSTPSPARGEAPAHLAGGVRGQED 106 PS GS+P P+RG +P HL G+ D Sbjct: 449 PSRGSSPMPSRGSSPVHLLHKGMGRSD 475
>LEU2_GLUOX (Q5FUG3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 475 Score = 30.0 bits (66), Expect = 1.7 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = +2 Query: 11 PRSVLPS*GSTPSPARGEAPAHLAGGVR-----GQEDGWRLSGAASGQAFLGFLAGS 166 P++VLP GS PSP+ PA A R G E G +++G F+G S Sbjct: 299 PQNVLPIDGSVPSPSDEPDPARAAQIQRALDYMGLEAGQKIAGTPVDVVFIGSCTNS 355
>LEU2_ZYMMO (Q5NRC5) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 484 Score = 28.5 bits (62), Expect = 5.0 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 5/57 (8%) Frame = +2 Query: 11 PRSVLPS*GSTPSPARGEAPAHLAGGVR-----GQEDGWRLSGAASGQAFLGFLAGS 166 P V+P G P PA PA A R G E G ++ G A F+G S Sbjct: 303 PEDVVPITGVVPDPASFADPAKQAAARRSLEYMGLEPGQKMEGLAVENVFIGSCTNS 359
>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2| Length = 917 Score = 28.5 bits (62), Expect = 5.0 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +2 Query: 2 LSPPRSVLPS*GSTPSPARGEAPAHL-AGGVRGQEDGWRLSGAASG 136 + PPR V PS + +PAR HL +G G +D R + SG Sbjct: 218 IMPPRPVQPSRPAAAAPARNNETLHLRSGAAAGGDDERRPAPRRSG 263
>Y2107_BORBR (Q7WKJ9) UPF0061 protein BB2107| Length = 495 Score = 27.7 bits (60), Expect = 8.6 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 59 GEAPAHLAGGVRGQEDGWRLSGAASG 136 G+ AHL G VRG GW L +G Sbjct: 92 GDGRAHLLGEVRGPAGGWELQLKGAG 117
>Y1919_BORPA (Q7W954) UPF0061 protein BPP1919| Length = 495 Score = 27.7 bits (60), Expect = 8.6 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 59 GEAPAHLAGGVRGQEDGWRLSGAASG 136 G+ AHL G VRG GW L +G Sbjct: 92 GDGRAHLLGEVRGPAGGWELQLKGAG 117 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,273,535 Number of Sequences: 219361 Number of extensions: 380312 Number of successful extensions: 1488 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 1407 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1487 length of database: 80,573,946 effective HSP length: 44 effective length of database: 70,922,062 effective search space used: 1702129488 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
