ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast71b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYEP_MOUSE (Q8CGC7) Bifunctional aminoacyl-tRNA synthetase [Incl... 39 0.004
2SYEP_HUMAN (P07814) Bifunctional aminoacyl-tRNA synthetase [Incl... 37 0.009
3SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Incl... 34 0.072
4MAST1_MOUSE (Q9R1L5) Microtubule-associated serine/threonine-pro... 30 1.4
5MAST1_RAT (Q810W7) Microtubule-associated serine/threonine-prote... 29 3.0
6ASF1_HELAN (P22357) Anther-specific protein SF18 precursor (Frag... 28 6.8

>SYEP_MOUSE (Q8CGC7) Bifunctional aminoacyl-tRNA synthetase [Includes:|
            Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
            ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
            (Proline--tRNA ligase)]
          Length = 1512

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 312  LGMAYKKDDNFGEWYSEVVVNSEMIE 389
            LG+  KK++N  EWYS+V+  SEMIE
Sbjct: 1014 LGLEAKKEENLAEWYSQVITKSEMIE 1039



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>SYEP_HUMAN (P07814) Bifunctional aminoacyl-tRNA synthetase [Includes:|
            Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
            ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
            (Proline--tRNA ligase)]
          Length = 1440

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +3

Query: 312  LGMAYKKDDNFGEWYSEVVVNSEMIE 389
            LG+  KK++N  +WYS+V+  SEMIE
Sbjct: 942  LGLEAKKEENLADWYSQVITKSEMIE 967



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>SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Includes:|
            Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
            ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
            (Proline--tRNA ligase)]
          Length = 1714

 Score = 34.3 bits (77), Expect = 0.072
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 312  LGMAYKKDDNFGEWYSEVVVNSEMIE 389
            LG+   K+DN  +WYS+V+   EMIE
Sbjct: 1215 LGLEATKEDNLPDWYSQVITKGEMIE 1240



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>MAST1_MOUSE (Q9R1L5) Microtubule-associated serine/threonine-protein kinase 1 (EC|
            2.7.11.1) (Syntrophin-associated serine/threonine-protein
            kinase)
          Length = 1566

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +2

Query: 32   AGRNRRCPAEAATSASLPGAGA 97
            AG N RCPAEA T A L   GA
Sbjct: 1537 AGLNSRCPAEAVTPAGLTKTGA 1558



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>MAST1_RAT (Q810W7) Microtubule-associated serine/threonine-protein kinase 1 (EC|
            2.7.11.1) (Syntrophin-associated serine/threonine-protein
            kinase)
          Length = 1570

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 32   AGRNRRCPAEAATSASLPGAGA 97
            AG N RCPAE   SA L   GA
Sbjct: 1541 AGSNSRCPAEGVASAGLTKTGA 1562



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>ASF1_HELAN (P22357) Anther-specific protein SF18 precursor (Fragment)|
          Length = 161

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 175 HPPPSTAAPRGDLGS*PCRP 234
           HPPP+ + P GD GS P  P
Sbjct: 97  HPPPTPSPPGGDGGSGPAPP 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,724,976
Number of Sequences: 219361
Number of extensions: 380654
Number of successful extensions: 1222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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