>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding|
           protein homolog 2)
          Length = 448

 Score =  156 bits (395), Expect = 3e-38
 Identities = 82/107 (76%), Positives = 86/107 (80%)
 Frame = +3

Query: 180 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 359
           FEP AAPSRVGRKQRKQ+GPEAAARLP VAP                   MEEEFVA+QE
Sbjct: 32  FEPSAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLLKLERVKDYLLMEEEFVAAQE 91

Query: 360 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPD 500
           RLRP+EDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGP+
Sbjct: 92  RLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPE 138

>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score =  119 bits (297), Expect = 6e-27
 Identities = 58/107 (54%), Positives = 78/107 (72%)
 Frame = +3

Query: 180 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 359
           +EPP  P+RVG+K+R+ +GP+AA +LP V P                   ME+EF+ +QE
Sbjct: 24  YEPPI-PTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQE 82

Query: 360 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPD 500
           RL+P ++K EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG +
Sbjct: 83  RLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSE 129

>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  118 bits (295), Expect = 1e-26
 Identities = 58/107 (54%), Positives = 79/107 (73%)
 Frame = +3

Query: 180 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 359
           +EPP  P+RVG+K++K +GP+AA++LP V P                   MEEEF+ +QE
Sbjct: 25  YEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 360 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPD 500
           +++P E+K EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG +
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSE 130

>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  118 bits (295), Expect = 1e-26
 Identities = 58/107 (54%), Positives = 79/107 (73%)
 Frame = +3

Query: 180 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 359
           +EPP  P+RVG+K++K +GP+AA++LP V P                   MEEEF+ +QE
Sbjct: 25  YEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 360 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPD 500
           +++P E+K EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG +
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSE 130

>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  118 bits (295), Expect = 1e-26
 Identities = 58/107 (54%), Positives = 79/107 (73%)
 Frame = +3

Query: 180 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 359
           +EPP  P+RVG+K++K +GP+AA++LP V P                   MEEEF+ +QE
Sbjct: 25  YEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 360 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPD 500
           +++P E+K EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG +
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSE 130

>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  115 bits (288), Expect = 7e-26
 Identities = 57/107 (53%), Positives = 78/107 (72%)
 Frame = +3

Query: 180 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 359
           +EPP  P+RVG+K++K +GP+AA++ P V P                   MEEEF+ +QE
Sbjct: 25  YEPPV-PTRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 360 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPD 500
           +++P E+K EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG +
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSE 130

>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score =  110 bits (276), Expect = 2e-24
 Identities = 53/107 (49%), Positives = 76/107 (71%)
 Frame = +3

Query: 180 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 359
           +E P  PSR+G+K++  +GP+AA++LP V P                   ME+EF+ +QE
Sbjct: 28  YEAPI-PSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQE 86

Query: 360 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPD 500
           RL+P E++ EE+R+KVD+LRGTPM+VGSLEEIID+ HAIVS++VG +
Sbjct: 87  RLKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSE 133

>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)|
          Length = 448

 Score =  105 bits (263), Expect = 5e-23
 Identities = 53/108 (49%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
 Frame = +3

Query: 180 FEPPAAPSRVGRKQRK-QRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQ 356
           +EPP  P+R GR+++K Q GP+A+A+LP V P                   MEEE+V +Q
Sbjct: 31  YEPPV-PTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQ 89

Query: 357 ERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPD 500
           ERL+P +++T+E+R++VD++RGTPMSVG+LEEIID+ HAIVS++ GP+
Sbjct: 90  ERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPE 136

>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding|
           homolog 5)
          Length = 437

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 45/107 (42%), Positives = 66/107 (61%)
 Frame = +3

Query: 180 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 359
           +EPP   S+ GRK+RK  GP  A +LP + P                   +EEEFV++ E
Sbjct: 23  YEPPVQ-SKFGRKKRKG-GPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSE 80

Query: 360 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPD 500
            L+P E K EE++ +++++RG P+S+G+LEEIID+ HAIV+S   PD
Sbjct: 81  ILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPD 127

>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = +3

Query: 336 EEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGP 497
           +E    +E LR  E   E+ RS +  ++  P+ VG++EEI+D+   IV SS GP
Sbjct: 70  DEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGP 123

>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog|
          Length = 413

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +3

Query: 330 MEEEFVASQ-ERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVG 494
           ++EE+V  + + LR    + +E+   V  ++  P+ +G   E+ID+++AIV S+ G
Sbjct: 51  IQEEYVKDELKNLRREHLRAQEE---VKRIQSVPLVIGQFMEMIDQNNAIVGSTTG 103

>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 348 ASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGP 497
           A +ERL   E +    RS++  LR  P   G++ E++DE  AIV +  GP
Sbjct: 38  ADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGP 84

>PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein)|
           (TAT-binding homolog 2)
          Length = 428

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = +3

Query: 330 MEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVG 494
           ++E+++  ++R    E K  ++  +V  ++  P+ +G   E ID++  IVSS+ G
Sbjct: 63  LQEDYIKDEQRHLKRELKRAQE--EVKRIQSVPLVIGQFLEPIDQNTGIVSSTTG 115

>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
            domain-containing protein 4) (Multiple EGF-like domain
            protein 4)
          Length = 2386

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 284  PPPPSQAGPRQGLPSHGGGVRREPGAAA 367
            PPPP+  GPR      G G    PGA A
Sbjct: 2076 PPPPADGGPRGAGDPGGAGASSGPGAPA 2103

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 284 PPPPSQAGPRQGLPSHGGGVRREP 355
           PPPP   GP +GL    GG R  P
Sbjct: 97  PPPPRSRGPPRGLRGGSGGTRGPP 120

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 284 PPPPSQAGPRQGLPSHGGGVRREP 355
           PPPP   GP +GL    GG R  P
Sbjct: 97  PPPPRSRGPPRGLRGGSGGTRGPP 120

>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 25.8 bits (55), Expect(2) = 5.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 180 FEPPAAPSRVGRKQRKQRGPEAAARLPP 263
           F  P  P+R GRK ++QR  E  A   P
Sbjct: 410 FGRPGGPARRGRKSKRQRRQEYEAMQAP 437



 Score = 21.9 bits (45), Expect(2) = 5.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 74  GGDGAGFSGRHG 109
           GG G GF+GR G
Sbjct: 370 GGGGGGFAGRPG 381

>GCP60_RAT (Q7TNY6) Golgi resident protein GCP60 (Acyl-CoA-binding|
           domain-containing protein 3) (Golgi phosphoprotein 1)
           (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1)
           (DMT1-associated protein) (DAP)
          Length = 525

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +2

Query: 275 LQVPPPPSQAGPRQGLPSHGGGVRREPGAAA 367
           LQ PP    + PR GL S   G +REPG AA
Sbjct: 33  LQTPP---SSPPRDGLGSGTAGQQREPGEAA 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,794,947
Number of Sequences: 219361
Number of extensions: 647792
Number of successful extensions: 4573
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4546
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)