>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 96      gaccgcgggcggcgtcgtcggcaaggtcacc 126
               |||| |||||||| |||||||||||||||||
Sbjct: 5244989 gacctcgggcggcctcgtcggcaaggtcacc 5244959

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 150     tgccgttggcggcgtcgccggc 171
               ||||||||||||||||||||||
Sbjct: 4638267 tgccgttggcggcgtcgccggc 4638246



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 265     ggcggcgtggtcggcaccgt 284
               ||||||||||||||||||||
Sbjct: 4092315 ggcggcgtggtcggcaccgt 4092296

>ref|XM_958079.1| Neurospora crassa OR74A hypothetical protein (NCU09594.1) partial
            mRNA
          Length = 1932

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 98   ccgcgggcggcgtcgtcggca 118
            |||||||||||||||||||||
Sbjct: 1241 ccgcgggcggcgtcgtcggca 1221

>ref|XM_330243.1| Neurospora crassa OR74A hypothetical protein (NCU09594.1) partial
            mRNA
          Length = 1932

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 98   ccgcgggcggcgtcgtcggca 118
            |||||||||||||||||||||
Sbjct: 1241 ccgcgggcggcgtcgtcggca 1221

>ref|XM_862060.1| PREDICTED: Canis familiaris hypothetical protein LOC610656
           (LOC610656), mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 87  cgccgccccgaccgcgggcgg 107
           |||||||||||||||||||||
Sbjct: 306 cgccgccccgaccgcgggcgg 286

>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 151    gccgttggcggcgtcgccggcaaag 175
              |||| ||||||||||||||||||||
Sbjct: 956052 gccggtggcggcgtcgccggcaaag 956076

>emb|BX284745.1|NCB18E6 Neurospora crassa DNA linkage group II BAC clone B18E6
          Length = 68593

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    ccgcgggcggcgtcgtcggca 118
             |||||||||||||||||||||
Sbjct: 58602 ccgcgggcggcgtcgtcggca 58582

>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 98      ccgcgggcggcgtcgtcggca 118
               |||||||||||||||||||||
Sbjct: 1884607 ccgcgggcggcgtcgtcggca 1884587

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 150     tgccgttggcggcgtcgccggcaa 173
               ||||||||||||| ||||||||||
Sbjct: 3046817 tgccgttggcggcctcgccggcaa 3046840

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      cccggtcatcggcgtcgtcg 25
              ||||||||||||||||||||
Sbjct: 625982 cccggtcatcggcgtcgtcg 626001

>gb|AF393749.1| Uncultured bacterium clone AMD155 16S ribosomal RNA gene, partial
           sequence
          Length = 971

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 ggcggcgtggtcggcaccgt 284
           ||||||||||||||||||||
Sbjct: 549 ggcggcgtggtcggcaccgt 530

>gb|AF411196.1| Uncultured bacterium clone AMD54 16S ribosomal RNA gene, partial
           sequence
          Length = 796

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 ggcggcgtggtcggcaccgt 284
           ||||||||||||||||||||
Sbjct: 547 ggcggcgtggtcggcaccgt 528

>gb|AF411198.1| Uncultured bacterium clone AMD154 16S ribosomal RNA gene, partial
           sequence
          Length = 728

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 ggcggcgtggtcggcaccgt 284
           ||||||||||||||||||||
Sbjct: 487 ggcggcgtggtcggcaccgt 468

>gb|AF411199.1| Uncultured bacterium clone AMD68 16S ribosomal RNA gene, partial
           sequence
          Length = 747

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 ggcggcgtggtcggcaccgt 284
           ||||||||||||||||||||
Sbjct: 506 ggcggcgtggtcggcaccgt 487

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 308    tcggcaccgtcggcggcgtggccg 331
              |||| |||||||||||||||||||
Sbjct: 629558 tcgggaccgtcggcggcgtggccg 629581



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 200    tcggcaccgtcggcggcgtggccg 223
              |||| |||||||||||||||||||
Sbjct: 629558 tcgggaccgtcggcggcgtggccg 629581

>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ctccggtcatcggcgtcgtc 57
              ||||||||||||||||||||
Sbjct: 101127 ctccggtcatcggcgtcgtc 101108

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 7       ccggtcatcggcgtcgtcgg 26
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      ccggtcatcggcgtcgtcgg 59
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042

>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    ccgtcggcggcgtggccggc 225
              ||||||||||||||||||||
Sbjct: 125160 ccgtcggcggcgtggccggc 125179



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    ccgtcggcggcgtggccggc 333
              ||||||||||||||||||||
Sbjct: 125160 ccgtcggcggcgtggccggc 125179

>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 211    ggcggcgtggccggcaaagtcacccccg 238
              ||||||||||||||||| |||| |||||
Sbjct: 217166 ggcggcgtggccggcaacgtcatccccg 217193

>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence
          Length = 1857073

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 274     gtcggcaccgttggcggcatggtc 297
               |||| |||||||||||||||||||
Sbjct: 1459522 gtcgccaccgttggcggcatggtc 1459545

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 276     cggcaccgttggcggcatgg 295
               ||||||||||||||||||||
Sbjct: 4025920 cggcaccgttggcggcatgg 4025939

>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence
          Length = 197615

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   ggcggcgtcgtcggcaaggt 122
             ||||||||||||||||||||
Sbjct: 34384 ggcggcgtcgtcggcaaggt 34403

>gb|AE012051.1| Xanthomonas axonopodis pv. citri str. 306,  section 429 of 469 of the
            complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 276  cggcaccgttggcggcatgg 295
            ||||||||||||||||||||
Sbjct: 9936 cggcaccgttggcggcatgg 9955

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 99      cgcgggcggcgtcgtcggcaaggt 122
               |||||||| |||||||||||||||
Sbjct: 4309839 cgcgggcgccgtcgtcggcaaggt 4309862

>gb|AY129334.1| Mycobacteriophage Rosebush, complete genome
          Length = 67480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   cggcgtggtcggcaccgttg 286
             ||||||||||||||||||||
Sbjct: 31005 cggcgtggtcggcaccgttg 31024

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 255     ccctgccgttggcggcgtgg 274
               ||||||||||||||||||||
Sbjct: 1413123 ccctgccgttggcggcgtgg 1413104

>gb|DQ060507.1| Nelumbo nucifera polyphenol oxidase 4-like mRNA, partial sequence
          Length = 1004

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 218 tggccggcaaagtcacccccgccg 241
           ||||||||||||||| ||||||||
Sbjct: 133 tggccggcaaagtcatccccgccg 110

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 38       ctccggtcatcggcgtcgtc 57
                ||||||||||||||||||||
Sbjct: 22841410 ctccggtcatcggcgtcgtc 22841391

>gb|AF222753.1|AF222753 Bradyrhizobium sp. WM9 nodulation region 1
          Length = 33038

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 150  tgccgttggcggcgtcgccggcaa 173
            ||||||| ||||||||||||||||
Sbjct: 3869 tgccgttcgcggcgtcgccggcaa 3892

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 150     tgccgttggcggcgtcgccggcaa 173
               |||||| |||||||||||||||||
Sbjct: 3391888 tgccgtgggcggcgtcgccggcaa 3391865

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     ggtcggcaccgtcggcggcg 217
               ||||||||||||||||||||
Sbjct: 4635525 ggtcggcaccgtcggcggcg 4635544



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 306     ggtcggcaccgtcggcggcg 325
               ||||||||||||||||||||
Sbjct: 4635525 ggtcggcaccgtcggcggcg 4635544

>dbj|AK062389.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-C07, full
           insert sequence
          Length = 745

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 15  cggcgtcgtcggtggcaccgtcactccg 42
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 48  cggcgtcgtcggtggcaccgtcactccg 75
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 99      cgcgggcggcgtcgtcggca 118
               ||||||||||||||||||||
Sbjct: 3007250 cgcgggcggcgtcgtcggca 3007231

>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
          Length = 1844853

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 274    gtcggcaccgttggcggcatggtc 297
              |||| |||||||||||||||||||
Sbjct: 922464 gtcgccaccgttggcggcatggtc 922487

>dbj|D13252.1|SMAASPA Serratia marcescens aspA gene for aspartase, complete cds
          Length = 2867

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 150 tgccgttggcggcgtcgccg 169
           ||||||||||||||||||||
Sbjct: 21  tgccgttggcggcgtcgccg 40

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 38       ctccggtcatcggcgtcgtc 57
                ||||||||||||||||||||
Sbjct: 23151320 ctccggtcatcggcgtcgtc 23151301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,793,910
Number of Sequences: 3902068
Number of extensions: 1793910
Number of successful extensions: 47621
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45053
Number of HSP's gapped (non-prelim): 2568
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)