>USF2_RAT (Q63665) Upstream stimulatory factor 2 (Upstream transcription|
           factor 2) (Major late transcription factor 2)
          Length = 346

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 383 NNWSFQLCSIVHDCLFNSSDVGAHTRGEAGGGC 285
           NNW  QL  I+ DC  ++S  GA   G     C
Sbjct: 252 NNWIVQLSKIIPDCHADNSKTGASKGGILSKAC 284

>USF2_MOUSE (Q64705) Upstream stimulatory factor 2 (Upstream transcription|
           factor 2) (Major late transcription factor 2)
          Length = 346

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 383 NNWSFQLCSIVHDCLFNSSDVGAHTRGEAGGGC 285
           NNW  QL  I+ DC  ++S  GA   G     C
Sbjct: 252 NNWIVQLSKIIPDCHADNSKTGASKGGILSKAC 284

>USF2_HUMAN (Q15853) Upstream stimulatory factor 2 (Upstream transcription|
           factor 2) (FOS-interacting protein) (FIP) (Major late
           transcription factor 2)
          Length = 346

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 383 NNWSFQLCSIVHDCLFNSSDVGAHTRGEAGGGC 285
           NNW  QL  I+ DC  ++S  GA   G     C
Sbjct: 252 NNWIVQLSKIIPDCNADNSKTGASKGGILSKAC 284

>EAD_EBV (P03191) Early antigen protein D (EA-D)|
          Length = 404

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 25  QSPKPAATNNPSPPRTPRCPLW 90
           Q P+   + +PSPP  PR P W
Sbjct: 326 QRPRHTVSPSPSPPPPPRTPTW 347

>USF1_XENBO (Q07957) Upstream stimulatory factor 1 (USF) (SPF1) (B1 factor)|
          Length = 307

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 383 NNWSFQLCSIVHDCLFNSSDVGAHTRGEAGGGC 285
           NNW  QL  I+ DC   S+  G    G     C
Sbjct: 213 NNWIVQLSKIIPDCSMESTKTGQSKGGILSKAC 245

>SRC8_CHICK (Q01406) Src substrate protein p85 (p80) (Cortactin)|
          Length = 563

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 25  QSPKPAATNNPSPPRTPRCPLW 90
           Q+P P+ T  P+ P+TP  P++
Sbjct: 409 QTPPPSPTTQPAEPKTPSSPVY 430

>MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like 1 precursor|
           (Protein methuselah-like 1)
          Length = 676

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   LALALSFQSPKPAATNNPSPPRT 72
           ++LA+   SP PAA   PSPP T
Sbjct: 34  MSLAIEEMSPPPAAPPRPSPPPT 56

>FABG_CUPLA (P28643) 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplast|
           precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier
           protein reductase)
          Length = 320

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 303 SSGVRTHVAAVEQAVVHDATELEAPVVVVT 392
           +SG+R  VA  E+        +E+PVV+VT
Sbjct: 54  TSGIRAQVATAEKVSAGAGQSVESPVVIVT 83

>Y211_BRUME (P67516) UPF0247 protein BMEI0211|
          Length = 174

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 353 VHDCLFNSSDVGAHTRGEAGGGCPEAVGSERGRT 252
           +H+ L N+   GA + G + GG    +  ERG+T
Sbjct: 63  IHEALDNAKSGGAKSGGTSSGGAALILLDERGKT 96

>Y1840_BRUSU (P67517) UPF0247 protein BR1840|
          Length = 174

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 353 VHDCLFNSSDVGAHTRGEAGGGCPEAVGSERGRT 252
           +H+ L N+   GA + G + GG    +  ERG+T
Sbjct: 63  IHEALDNAKSGGAKSGGTSSGGAALILLDERGKT 96

>LPXA_NEIMB (P95379) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine|
           O-acyltransferase (EC 2.3.1.129)
           (UDP-N-acetylglucosamine acyltransferase)
          Length = 258

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 386 NNNWSFQLCSIVHDCLFNSSDVGAHTRGEAG 294
           ++NW    C + HDC+  +  + A+    AG
Sbjct: 109 DDNWIMAYCHLAHDCVIGNHTIFANNASLAG 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.129    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,354,438
Number of Sequences: 219361
Number of extensions: 362889
Number of successful extensions: 2180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2177
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)