ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast70h08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB108145.1| Phleum pratense DNA, SSR, microsatellite A07-C12 Length = 449 Score = 109 bits (55), Expect = 7e-21 Identities = 76/83 (91%) Strand = Plus / Plus Query: 309 ggtgtgcgcacccacgtcgctgctgttgaacaagcagtcgtgcacgatgctacagagctg 368 |||||||||||||| || |||| ||||||||||||||| ||||| ||||||||||| ||| Sbjct: 167 ggtgtgcgcacccatgttgctgttgttgaacaagcagttgtgcaagatgctacagaactg 226 Query: 369 gaagctccagttgttgttgttac 391 ||||||||||||||||| ||||| Sbjct: 227 gaagctccagttgttgtcgttac 249
>gb|AY106146.1| Zea mays PCO074795 mRNA sequence Length = 1342 Score = 93.7 bits (47), Expect = 4e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 305 ctctggtgtgcgcacccacgtcgctgctgttgaacaagcagtcgtgcacgatgctacaga 364 ||||||||||| ||||| || |||||||||||||||||||| || | |||||||| | Sbjct: 328 ctctggtgtgcaaacccatgttgctgctgttgaacaagcagttgtaaaagatgctaccaa 387 Query: 365 gctggaagctccagttgttgttgttac 391 ||||||||||||||||||||||||||| Sbjct: 388 gctggaagctccagttgttgttgttac 414
>gb|U31957.1|TAU31957 Triticum aestivum clone PEMB1 transposon Tn1721 homolog mRNA Length = 395 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 36 acccgccgctacaaataacccctctcctcctcgcacgccacgctgccccctctggcttac 95 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 205 acccgccgtcacaaataacccccttcctcctcgcacgccacgctgccccctctggcttac 146 Query: 96 cg 97 || Sbjct: 145 cg 144 Score = 54.0 bits (27), Expect = 4e-04 Identities = 37/39 (94%), Gaps = 1/39 (2%) Strand = Plus / Minus Query: 7 gctcttgctttgagcttccaaagccccaaacccgccgct 45 |||||||||| ||||||||||||||||||| |||||||| Sbjct: 248 gctcttgctt-gagcttccaaagccccaaagccgccgct 211
>ref|XM_472196.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 957 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 330 gctgttgaacaagcagtcgtgcacgatgctacagagctggaagctccagttgttgttgt 388 |||||||| |||||| | ||||| ||||||||| || ||||||||||||||||| |||| Sbjct: 181 gctgttgagcaagcacttgtgcaagatgctacaaagttggaagctccagttgttattgt 239
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 330 gctgttgaacaagcagtcgtgcacgatgctacagagctggaagctccagttgttgttgt 388 |||||||| |||||| | ||||| ||||||||| || ||||||||||||||||| |||| Sbjct: 18395931 gctgttgagcaagcacttgtgcaagatgctacaaagttggaagctccagttgttattgt 18395873
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15, complete sequence Length = 133413 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 330 gctgttgaacaagcagtcgtgcacgatgctacagagctggaagctccagttgttgttgt 388 |||||||| |||||| | ||||| ||||||||| || ||||||||||||||||| |||| Sbjct: 97854 gctgttgagcaagcacttgtgcaagatgctacaaagttggaagctccagttgttattgt 97796
>dbj|AB108161.1| Phleum pratense DNA, SSR, microsatellite A07-H10 Length = 566 Score = 50.1 bits (25), Expect = 0.005 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 334 ttgaacaagca-gtcgtgcacgatgctacagagctggaagctcca 377 ||||||||||| || ||||| ||||||||||| |||||||||||| Sbjct: 337 ttgaacaagcaagttgtgcaagatgctacagaactggaagctcca 293
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 46.1 bits (23), Expect = 0.085 Identities = 23/23 (100%) Strand = Plus / Plus Query: 242 ggccgccgcccgtacgtccgcgc 264 ||||||||||||||||||||||| Sbjct: 19675 ggccgccgcccgtacgtccgcgc 19697
>ref|XM_846423.1| PREDICTED: Canis familiaris similar to Dre1 protein (LOC609209), mRNA Length = 1929 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 197 cgccgcctcgtcctcggcgcgc 218 |||||||||||||||||||||| Sbjct: 549 cgccgcctcgtcctcggcgcgc 528
>gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, complete sequence Length = 175843 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 gccgcctcgtcctcggcgcgc 218 ||||||||||||||||||||| Sbjct: 71498 gccgcctcgtcctcggcgcgc 71478
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 ccgccgcccgtacgtccgcgc 264 ||||||||||||||||||||| Sbjct: 5997039 ccgccgcccgtacgtccgcgc 5997059
>ref|XM_905932.2| PREDICTED: Mus musculus RIKEN cDNA 2810406K13 gene, transcript variant 3 (2810406K13Rik), mRNA Length = 1948 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 gccgcctcgtcctcggcgcgc 218 ||||||||||||||||||||| Sbjct: 440 gccgcctcgtcctcggcgcgc 420
>ref|XM_989045.1| PREDICTED: Mus musculus RIKEN cDNA 2810406K13 gene (2810406K13Rik), mRNA Length = 1948 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 gccgcctcgtcctcggcgcgc 218 ||||||||||||||||||||| Sbjct: 440 gccgcctcgtcctcggcgcgc 420
>ref|XM_133597.5| PREDICTED: Mus musculus RIKEN cDNA 2810406K13 gene, transcript variant 1 (2810406K13Rik), mRNA Length = 1948 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 gccgcctcgtcctcggcgcgc 218 ||||||||||||||||||||| Sbjct: 440 gccgcctcgtcctcggcgcgc 420
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 ccgatccgaccgcctccgggc 286 ||||||||||||||||||||| Sbjct: 1985846 ccgatccgaccgcctccgggc 1985866
>gb|AC121777.3| Mus musculus BAC clone RP23-359A23 from chromosome 16, complete sequence Length = 192846 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 acagagctggaagctccagtt 380 ||||||||||||||||||||| Sbjct: 40978 acagagctggaagctccagtt 40998
>dbj|AK013012.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810406K13 product:hypothetical BTB/POZ domain/Kelch repeat containing protein, full insert sequence Length = 1928 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 gccgcctcgtcctcggcgcgc 218 ||||||||||||||||||||| Sbjct: 424 gccgcctcgtcctcggcgcgc 404
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08, complete sequence Length = 111961 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 ccgccgcccgtacgtccgcgc 264 ||||||||||||||||||||| Sbjct: 55574 ccgccgcccgtacgtccgcgc 55594
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 ccgccgcccgtacgtccgcgc 264 ||||||||||||||||||||| Sbjct: 5996252 ccgccgcccgtacgtccgcgc 5996272
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 ctcgtcctcggcgcgccgggg 223 ||||||||||||||||||||| Sbjct: 3706144 ctcgtcctcggcgcgccgggg 3706164
>dbj|AP001099.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-883A18, complete sequence Length = 164343 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 274 accgcctccgggcagccgccgccgg 298 |||||| |||||||||||||||||| Sbjct: 7975 accgcccccgggcagccgccgccgg 7951
>ref|XM_481526.1| Oryza sativa (japonica cultivar-group), mRNA Length = 864 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 gcagccgccgccggcttctcctct 308 ||||||||||||| |||||||||| Sbjct: 139 gcagccgccgccgccttctcctct 116
>ref|XM_465860.1| Oryza sativa (japonica cultivar-group), mRNA Length = 948 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gctccagttgttgttgttac 391 |||||||||||||||||||| Sbjct: 205 gctccagttgttgttgttac 224
>gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0017M13, complete sequence Length = 161902 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 gcagccgccgccggcttctcctct 308 ||||||||||||| |||||||||| Sbjct: 127524 gcagccgccgccgccttctcctct 127501
>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004P24, complete sequence Length = 137721 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tgctttgagcttccaaagcc 31 |||||||||||||||||||| Sbjct: 40425 tgctttgagcttccaaagcc 40444
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0111O13, complete sequence Length = 126332 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cgcctccgggcagccgccgc 295 |||||||||||||||||||| Sbjct: 65717 cgcctccgggcagccgccgc 65736
>ref|XM_743435.1| Aspergillus fumigatus Af293 allantoate permease (Afu3g02080) partial mRNA Length = 1542 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 tgcctcgcgccgcctcgtcc 209 |||||||||||||||||||| Sbjct: 156 tgcctcgcgccgcctcgtcc 175
>gb|BC014599.2| Homo sapiens tektin 1, mRNA (cDNA clone MGC:26720 IMAGE:4824860), complete cds Length = 1428 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 agagctggaagctccagttg 381 |||||||||||||||||||| Sbjct: 21 agagctggaagctccagttg 40
>gb|BC025341.1| Homo sapiens, Similar to cytoskeleton-associated protein 4, clone IMAGE:5093829, mRNA, partial cds Length = 2050 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 cctcgcgccgcctcgtcctcggcg 215 |||| ||||||||||||||||||| Sbjct: 146 cctctcgccgcctcgtcctcggcg 169
>gb|AC027763.9| Homo sapiens chromosome 17, clone RP11-530N7, complete sequence Length = 169770 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 agagctggaagctccagttg 381 |||||||||||||||||||| Sbjct: 147101 agagctggaagctccagttg 147120
>ref|NM_053285.1| Homo sapiens tektin 1 (TEKT1), mRNA Length = 1428 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 agagctggaagctccagttg 381 |||||||||||||||||||| Sbjct: 21 agagctggaagctccagttg 40
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 cgcgccgcctcgtcctcggcgcgc 218 |||||||||||||||| ||||||| Sbjct: 3233367 cgcgccgcctcgtccttggcgcgc 3233344
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tgctttgagcttccaaagcc 31 |||||||||||||||||||| Sbjct: 7776530 tgctttgagcttccaaagcc 7776511
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cgcctccgggcagccgccgc 295 |||||||||||||||||||| Sbjct: 12105899 cgcctccgggcagccgccgc 12105918
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 gcagccgccgccggcttctcctct 308 ||||||||||||| |||||||||| Sbjct: 13403051 gcagccgccgccgccttctcctct 13403028
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cgcctccgggcagccgccgc 295 |||||||||||||||||||| Sbjct: 2233286 cgcctccgggcagccgccgc 2233305
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gctccagttgttgttgttac 391 |||||||||||||||||||| Sbjct: 17950441 gctccagttgttgttgttac 17950422
>gb|AC034305.6|AC034305 Homo sapiens chromosome 17, clone RP11-609D21, complete sequence Length = 103699 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 agagctggaagctccagttg 381 |||||||||||||||||||| Sbjct: 83800 agagctggaagctccagttg 83781
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 cgccgcccgtacgtccgcgctccg 268 |||||||| ||||||||||||||| Sbjct: 7882097 cgccgcccctacgtccgcgctccg 7882074
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 cctcgtcctcggcgcgccgg 221 |||||||||||||||||||| Sbjct: 4722947 cctcgtcctcggcgcgccgg 4722928
>dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1136D08 Length = 176635 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 gcagccgccgccggcttctcctct 308 ||||||||||||| |||||||||| Sbjct: 154520 gcagccgccgccgccttctcctct 154497
>dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1120_B07 Length = 118763 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 gcagccgccgccggcttctcctct 308 ||||||||||||| |||||||||| Sbjct: 39778 gcagccgccgccgccttctcctct 39755
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cgcctccgggcagccgccgc 295 |||||||||||||||||||| Sbjct: 17358 cgcctccgggcagccgccgc 17377
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cgcctccgggcagccgccgc 295 |||||||||||||||||||| Sbjct: 40278 cgcctccgggcagccgccgc 40297
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B06 Length = 99637 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gctccagttgttgttgttac 391 |||||||||||||||||||| Sbjct: 85074 gctccagttgttgttgttac 85055
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F04 Length = 139563 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gctccagttgttgttgttac 391 |||||||||||||||||||| Sbjct: 12035 gctccagttgttgttgttac 12016
>gb|AY109929.1| Zea mays CL4401_1 mRNA sequence Length = 721 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gcgccgcctcgtcctcggcg 215 |||||||||||||||||||| Sbjct: 58 gcgccgcctcgtcctcggcg 39
>dbj|AP002518.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-64D24, complete sequence Length = 164795 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aaataacccctctcctcctc 67 |||||||||||||||||||| Sbjct: 50729 aaataacccctctcctcctc 50748
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tgctttgagcttccaaagcc 31 |||||||||||||||||||| Sbjct: 7846617 tgctttgagcttccaaagcc 7846598
>gb|CP000220.1| Drosophila melanogaster genomic scaffold 211000022280793 Length = 328417 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gctccagttgttgttgttac 391 |||||||||||||||||||| Sbjct: 241728 gctccagttgttgttgttac 241747
>gb|AC132111.4| Mus musculus BAC clone RP24-200H19 from 14, complete sequence Length = 174164 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 acaaataacccctctcctcc 65 |||||||||||||||||||| Sbjct: 136065 acaaataacccctctcctcc 136084 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 acaaataacccctctcctcc 65 |||||||||||||||||||| Sbjct: 135924 acaaataacccctctcctcc 135943 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 acaaataacccctctcctcc 65 |||||||||||||||||||| Sbjct: 135879 acaaataacccctctcctcc 135898 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 acaaataacccctctcctcc 65 |||||||||||||||||||| Sbjct: 135744 acaaataacccctctcctcc 135763 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 acaaataacccctctcctcc 65 |||||||||||||||||||| Sbjct: 135648 acaaataacccctctcctcc 135667 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 acaaataacccctctcctcc 65 |||||||||||||||||||| Sbjct: 135586 acaaataacccctctcctcc 135605 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 acaaataacccctctcctcc 65 |||||||||||||||||||| Sbjct: 135442 acaaataacccctctcctcc 135461
>dbj|AP004550.2| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-60D22, complete sequence Length = 118465 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tttgagcttccaaagcccca 34 |||||||||||||||||||| Sbjct: 48563 tttgagcttccaaagcccca 48544 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,338,863 Number of Sequences: 3902068 Number of extensions: 3338863 Number of successful extensions: 59066 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58056 Number of HSP's gapped (non-prelim): 1010 length of query: 394 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 372 effective length of database: 17,147,199,772 effective search space: 6378758315184 effective search space used: 6378758315184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
