>UPS2_ARATH (Q9ZQ89) Ureide permease 2 (AtUPS2)|
          Length = 398

 Score =  121 bits (304), Expect = 3e-28
 Identities = 58/112 (51%), Positives = 71/112 (63%)
 Frame = +1

Query: 64  MYLVKDIXXXXXXXXXXXXXXXTWPXXXXXXXXXXXXPQHTYLDYSITNFLAAVLIALTF 243
           MYLV+                 TWP            PQHTYLDYSITN LAA++IA TF
Sbjct: 1   MYLVESKGGAIACMLLALLSLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAIIIAFTF 60

Query: 244 GQIGGDTPETPNFLTQLTQPQDYWPSIMFALAGGVVITLGTVATQYGWAYVG 399
           GQIG   P++PNF+TQL   QD WPS+MFA+AGG+V++LG ++TQY WA VG
Sbjct: 61  GQIGSTKPDSPNFITQLA--QDNWPSVMFAMAGGIVLSLGNLSTQYAWALVG 110

>UPS5_ARATH (Q93Z75) Ureide permease 5 (AtUPS5)|
          Length = 413

 Score =  114 bits (286), Expect = 4e-26
 Identities = 53/90 (58%), Positives = 64/90 (71%)
 Frame = +1

Query: 130 TWPXXXXXXXXXXXXPQHTYLDYSITNFLAAVLIALTFGQIGGDTPETPNFLTQLTQPQD 309
           TWP            PQHTYLDYSITNFLAA+ IA  FG IG  T E P+F+TQLTQ QD
Sbjct: 31  TWPALMALLERRGRLPQHTYLDYSITNFLAAIFIAFVFGGIGESTHEAPSFITQLTQIQD 90

Query: 310 YWPSIMFALAGGVVITLGTVATQYGWAYVG 399
            WPS++FA+AGGV +++G +ATQY  A+VG
Sbjct: 91  NWPSVLFAMAGGVGLSIGNLATQYSLAFVG 120

>UPS1_ARATH (Q9ZPR7) Ureide permease 1 (AtUPS1)|
          Length = 390

 Score =  111 bits (278), Expect = 4e-25
 Identities = 55/112 (49%), Positives = 69/112 (61%)
 Frame = +1

Query: 64  MYLVKDIXXXXXXXXXXXXXXXTWPXXXXXXXXXXXXPQHTYLDYSITNFLAAVLIALTF 243
           MY+++                 TWP            PQHTYLDY++TN LAAV+IALT 
Sbjct: 1   MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query: 244 GQIGGDTPETPNFLTQLTQPQDYWPSIMFALAGGVVITLGTVATQYGWAYVG 399
           G+IG   P  PNF TQL+  QD W S+MFA+AGG+V++LG +ATQY WAYVG
Sbjct: 61  GEIG---PSRPNFFTQLS--QDNWQSVMFAMAGGIVLSLGNLATQYAWAYVG 107

>UPSA3_VIGUN (Q41706) Probable ureide permease A3 (VuA3) (Fragment)|
          Length = 376

 Score =  110 bits (274), Expect = 1e-24
 Identities = 51/90 (56%), Positives = 64/90 (71%)
 Frame = +1

Query: 130 TWPXXXXXXXXXXXXPQHTYLDYSITNFLAAVLIALTFGQIGGDTPETPNFLTQLTQPQD 309
           TWP            PQHTYLDYSITNF AA+LIA TFG+IG   P+ PNFL QL   QD
Sbjct: 22  TWPALLTMLERRGRLPQHTYLDYSITNFFAALLIAFTFGEIGKGKPDEPNFLAQLA--QD 79

Query: 310 YWPSIMFALAGGVVITLGTVATQYGWAYVG 399
            WPS++FA+ GGVV++LG +++QY +A+VG
Sbjct: 80  NWPSVLFAMGGGVVLSLGNLSSQYAFAFVG 109

>UPS3_ARATH (Q9ZPR6) Ureide permease 3 (AtUPS3)|
          Length = 344

 Score =  108 bits (271), Expect = 2e-24
 Identities = 53/112 (47%), Positives = 69/112 (61%)
 Frame = +1

Query: 64  MYLVKDIXXXXXXXXXXXXXXXTWPXXXXXXXXXXXXPQHTYLDYSITNFLAAVLIALTF 243
           MY+++                 TWP            PQHTYLDY++TN LAAV+IA T 
Sbjct: 1   MYVIESKGGTITCMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIAFTL 60

Query: 244 GQIGGDTPETPNFLTQLTQPQDYWPSIMFALAGGVVITLGTVATQYGWAYVG 399
           G+I   +P  PNF TQL+Q  D WPS+MFA+AGG+ ++LGT+ATQY WA+VG
Sbjct: 61  GEI---SPSRPNFTTQLSQ--DNWPSVMFAMAGGIFLSLGTLATQYAWAFVG 107

>UPS4_ARATH (Q9ZQ88) Ureide permease 4 (AtUPS4)|
          Length = 401

 Score = 92.4 bits (228), Expect = 2e-19
 Identities = 42/90 (46%), Positives = 61/90 (67%)
 Frame = +1

Query: 130 TWPXXXXXXXXXXXXPQHTYLDYSITNFLAAVLIALTFGQIGGDTPETPNFLTQLTQPQD 309
           +WP            PQHT+LD++  N LAA++IA + G+IG  T   P+F TQL  PQD
Sbjct: 23  SWPAILTLLERRGRLPQHTFLDFATANLLAAIVIAFSLGEIGKSTFLKPDFTTQL--PQD 80

Query: 310 YWPSIMFALAGGVVITLGTVATQYGWAYVG 399
            WPS++ A+AGGV++++G +ATQY +A+VG
Sbjct: 81  NWPSVLLAVAGGVLLSIGNLATQYAFAFVG 110

>HBAD_PHACA (P10781) Hemoglobin alpha-D subunit (Hemoglobin alpha-D chain)|
           (Alpha-D-globin)
          Length = 141

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 351 HHAARQRKHDGRPVVLRLGELSEEIGRLRRVAADLA 244
           HH + Q ++ G+ VV  LG   + +  LR+  ADL+
Sbjct: 49  HHGSEQIRNHGKKVVTALGNAIQNLDNLRQTLADLS 84

>TRAI5_ECOLI (Q00192) Protein traI|
          Length = 747

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 396 DVCPAVLRGHGAEGDHHAARQRKHDGRPVVL-RLGELSEEIGRLRRVAAD 250
           ++C A+ R +G E D+H  R+R  +GR   + R   +   +G ++R   D
Sbjct: 143 ELCTALERDYGLERDNHEPRKRGAEGRAADMERHAGVESLVGWIKRECLD 192

>RHG04_HUMAN (P98171) Rho-GTPase-activating protein 4 (Rho-GAP hematopoietic|
           protein C1) (p115)
          Length = 946

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 390 CPAVLRGHGAEGDHHAARQRKHDGRPVVLRLGELSEEIGRLRRVAADLAE 241
           C AVL  H  +    +A   +    P+  RL  ++E++GRL + + DL +
Sbjct: 102 CWAVLLQHTRQQSRESAALSEVLAGPLAQRLSHIAEDVGRLVKKSRDLEQ 151

>DAPB_ANASP (Q8YU19) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)|
          Length = 278

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 190 LDYSITNFLAAVLIALTFGQIGGDTPETPNFLTQLTQPQDYWPSIMFALAGGVVITLGT 366
           L+  ITN L  +L     G + G+    P  +   T P   + ++  A+A G+   +GT
Sbjct: 59  LEVPITNQLEPML-----GYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGT 112

>BEX3_BOVIN (Q3ZBJ6) Protein BEX3 (Brain-expressed X-linked protein 3 homolog)|
           (p75NTR-associated cell death executor) (Nerve growth
           factor receptor-associated protein 1)
          Length = 112

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 165 QALQHGEDDRP--GAEEHQGRRHQPDGSA 85
           Q +Q+GE+DRP  G E HQ  R+   G A
Sbjct: 13  QPVQNGEEDRPLGGGEGHQPERNHRRGQA 41

>TRAI6_ECOLI (Q00191) Protein traI|
          Length = 732

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 396 DVCPAVLRGHGAEGDHHAARQRKHDGR 316
           D+C  + R +G E D+H  RQR  + R
Sbjct: 143 DLCATLERDYGLERDNHETRQRVSENR 169

>K1024_HUMAN (Q9UPX6) UPF0258 protein KIAA1024|
          Length = 916

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 375 RGHGAEGDHHAARQRKHDGRPVVLRLGELSEEIGRLRRVAADLAE 241
           +G+  E  HH+  + K     +VLR+GE+  ++  L  V  ++++
Sbjct: 578 KGNRPENTHHSEEELKTSVCKLVLRIGEIERKLESLSGVRDEISQ 622

>ARP3_NEUCR (P78712) Actin-like protein 3 (Actin-related protein 3)|
          Length = 439

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 244 GQIGGDTPETPNFLTQLTQPQDYWPSIM--FALAGG 345
           G + G TPE  ++     + Q+Y PSI+  FAL GG
Sbjct: 400 GSLLGQTPEFRSYCHTKAEYQEYGPSIVRRFALLGG 435

>IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) (Novel|
           interleukin receptor)
          Length = 538

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +2

Query: 20  PHLWLAVTAAVTKIRCIW*RTSAEPSG*WRRPWCSSAPGRSSSPCWSACDG 172
           PHL L +   +  I   W   +      W++ W   +P R   P +  C G
Sbjct: 236 PHLLLLLLLVIVFIPAFWSLKTHPLWRLWKKIWAVPSPERFFMPLYKGCSG 286

>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 174  QPSQALQHGEDDRPGAEEHQGRRHQPDGSAD 82
            QP  A + G D  PG++   GR   P G  D
Sbjct: 1002 QPGTAGEPGRDGNPGSDGQPGRDGSPGGKGD 1032

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 174  QPSQALQHGEDDRPGAEEHQGRRHQPDGSAD 82
            QP  A + G D  PG++   GR   P G  D
Sbjct: 1002 QPGTAGEPGRDGNPGSDGQPGRDGSPGGKGD 1032

>PCX_DROME (P18490) Protein pecanex|
          Length = 3433

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +1

Query: 178  QHTYLDYSITNFLAAVLIALTFGQIGGDTPETPNFLTQLTQPQDYWPSIMFALAGGVVIT 357
            QH +          AV+    +  +    P+  + +    +   Y  +I F LAGG+++ 
Sbjct: 1336 QHDHYKDLCALLFCAVIAGAQYSLVKSVQPDAASPVHGFNKTVAYSRAIYFCLAGGMLLL 1395

Query: 358  LGTVATQYG 384
            L  + T YG
Sbjct: 1396 LKRLDTDYG 1404


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,407,977
Number of Sequences: 219361
Number of extensions: 741444
Number of successful extensions: 2403
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2396
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)