ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast70g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472922.1| Oryza sativa (japonica cultivar-group), predic... 157 3e-35
2dbj|AK064143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
3emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 123 5e-25
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
5emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 123 5e-25
6ref|NM_196582.1| Oryza sativa (japonica cultivar-group) hypothet... 111 2e-21
7gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
10ref|XM_466540.1| Oryza sativa (japonica cultivar-group), mRNA 84 4e-13
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
12dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
14dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
15ref|XM_463586.1| Oryza sativa (japonica cultivar-group), predic... 52 0.001
16dbj|AK067269.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
17gb|BC060763.1| Homo sapiens cDNA clone IMAGE:4825782, containing... 44 0.36
18emb|AL160176.3| Human DNA sequence from clone RP4-579F20 on chro... 44 0.36
19dbj|AK128070.1| Homo sapiens cDNA FLJ46191 fis, clone TESTI40054... 44 0.36
20ref|NM_080618.2| Homo sapiens CCCTC-binding factor (zinc finger ... 44 0.36
21gb|AF336042.1| Homo sapiens nuclear DNA binding factor (BORIS) m... 44 0.36
22gb|AY071919.1| Homo sapiens zinc finger protein CTCF-T mRNA, com... 44 0.36
23emb|CR710133.2|CNS0GAW1 Tetraodon nigroviridis full-length cDNA 42 1.4
24dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
26dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
27dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
28gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 42 1.4
29ref|NM_192265.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
30gb|AC163636.5| Mus musculus BAC clone RP24-499E13 from chromosom... 40 5.6
31gb|AC162282.6| Mus musculus chromosome 8, clone RP23-154H18, com... 40 5.6
32gb|AC136101.2| Rattus norvegicus 4 BAC CH230-158D16 (Children's ... 40 5.6
33gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.6
34gb|AC130527.4| Mus musculus BAC clone RP23-56C10 from chromosome... 40 5.6
35gb|AC102625.8| Mus musculus chromosome 8, clone RP23-453E3, comp... 40 5.6
36gb|AC009346.5|AC009346 Drosophila melanogaster, chromosome 3R, r... 40 5.6
37dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
38dbj|AK069831.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
39gb|AE003602.4| Drosophila melanogaster chromosome 3R, section 6 ... 40 5.6 
>ref|XM_472922.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1068

 Score =  157 bits (79), Expect = 3e-35
 Identities = 151/175 (86%)
 Strand = Plus / Plus

                                                                       
Query: 229 ggtcgtgacgtcggacgggcagagcatggccgcgcactcctacgttcttgcctcggcgtc 288
           |||||| |||||||||||| ||||||| ||||| || || | |||||||| | |||||||
Sbjct: 57  ggtcgtcacgtcggacgggaagagcatcgccgcccattcgttcgttcttggcacggcgtc 116

                                                                       
Query: 289 gccggtgctggagcggatgatcgacagggcgcagggcgggtggggcgccgagtgcaccat 348
           ||||||||||||||||||||||||  |||| | | | ||||||  |||||||||||||||
Sbjct: 117 gccggtgctggagcggatgatcgagcgggcacggcgggggtggaacgccgagtgcaccat 176

                                                                  
Query: 349 ccgcgtcctcggcgtgtcctacgacgccgtccacgccttcatccacttcctctac 403
           ||||||||||||||| |||| ||||||||||  ||||||| |||| || ||||||
Sbjct: 177 ccgcgtcctcggcgtctcctccgacgccgtcttcgccttcctccagttgctctac 231
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>dbj|AK064143.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B11, full
           insert sequence
          Length = 1555

 Score =  157 bits (79), Expect = 3e-35
 Identities = 151/175 (86%)
 Strand = Plus / Plus

                                                                       
Query: 229 ggtcgtgacgtcggacgggcagagcatggccgcgcactcctacgttcttgcctcggcgtc 288
           |||||| |||||||||||| ||||||| ||||| || || | |||||||| | |||||||
Sbjct: 209 ggtcgtcacgtcggacgggaagagcatcgccgcccattcgttcgttcttggcacggcgtc 268

                                                                       
Query: 289 gccggtgctggagcggatgatcgacagggcgcagggcgggtggggcgccgagtgcaccat 348
           ||||||||||||||||||||||||  |||| | | | ||||||  |||||||||||||||
Sbjct: 269 gccggtgctggagcggatgatcgagcgggcacggcgggggtggaacgccgagtgcaccat 328

                                                                  
Query: 349 ccgcgtcctcggcgtgtcctacgacgccgtccacgccttcatccacttcctctac 403
           ||||||||||||||| |||| ||||||||||  ||||||| |||| || ||||||
Sbjct: 329 ccgcgtcctcggcgtctcctccgacgccgtcttcgccttcctccagttgctctac 383
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>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
             complete sequence
          Length = 129498

 Score =  123 bits (62), Expect = 5e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                         
Query: 282   cggcgtcgccggtgctggagcggatgatcgacagggcgcagggcgggtggggcgccgagt 341
             |||||||||||||||||||||||||||||||  |||| | | | ||||||  ||||||||
Sbjct: 88563 cggcgtcgccggtgctggagcggatgatcgagcgggcacggcgggggtggaacgccgagt 88622

                                                                         
Query: 342   gcaccatccgcgtcctcggcgtgtcctacgacgccgtccacgccttcatccacttcctct 401
             |||||||||||||||||||||| |||| ||||||||||  ||||||| |||| || ||||
Sbjct: 88623 gcaccatccgcgtcctcggcgtctcctccgacgccgtcttcgccttcctccagttgctct 88682

               
Query: 402   ac 403
             ||
Sbjct: 88683 ac 88684



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 229   ggtcgtgacgtcggacgggcagagcatggccgcgcactcctacgttcttg 278
             |||||| |||||||||||| ||||||| ||||| || || | ||||||||
Sbjct: 88395 ggtcgtcacgtcggacgggaagagcatcgccgcccattcgttcgttcttg 88444
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  123 bits (62), Expect = 5e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                            
Query: 282      cggcgtcgccggtgctggagcggatgatcgacagggcgcagggcgggtggggcgccgagt 341
                |||||||||||||||||||||||||||||||  |||| | | | ||||||  ||||||||
Sbjct: 24091584 cggcgtcgccggtgctggagcggatgatcgagcgggcacggcgggggtggaacgccgagt 24091643

                                                                            
Query: 342      gcaccatccgcgtcctcggcgtgtcctacgacgccgtccacgccttcatccacttcctct 401
                |||||||||||||||||||||| |||| ||||||||||  ||||||| |||| || ||||
Sbjct: 24091644 gcaccatccgcgtcctcggcgtctcctccgacgccgtcttcgccttcctccagttgctct 24091703

                  
Query: 402      ac 403
                ||
Sbjct: 24091704 ac 24091705



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 229      ggtcgtgacgtcggacgggcagagcatggccgcgcactcctacgttcttg 278
                |||||| |||||||||||| ||||||| ||||| || || | ||||||||
Sbjct: 24091416 ggtcgtcacgtcggacgggaagagcatcgccgcccattcgttcgttcttg 24091465
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>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete
             sequence
          Length = 90767

 Score =  123 bits (62), Expect = 5e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                         
Query: 282   cggcgtcgccggtgctggagcggatgatcgacagggcgcagggcgggtggggcgccgagt 341
             |||||||||||||||||||||||||||||||  |||| | | | ||||||  ||||||||
Sbjct: 84830 cggcgtcgccggtgctggagcggatgatcgagcgggcacggcgggggtggaacgccgagt 84889

                                                                         
Query: 342   gcaccatccgcgtcctcggcgtgtcctacgacgccgtccacgccttcatccacttcctct 401
             |||||||||||||||||||||| |||| ||||||||||  ||||||| |||| || ||||
Sbjct: 84890 gcaccatccgcgtcctcggcgtctcctccgacgccgtcttcgccttcctccagttgctct 84949

               
Query: 402   ac 403
             ||
Sbjct: 84950 ac 84951



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 229   ggtcgtgacgtcggacgggcagagcatggccgcgcactcctacgttcttg 278
             |||||| |||||||||||| ||||||| ||||| || || | ||||||||
Sbjct: 84662 ggtcgtcacgtcggacgggaagagcatcgccgcccattcgttcgttcttg 84711
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>ref|NM_196582.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0072A12.22), mRNA
          Length = 372

 Score =  111 bits (56), Expect = 2e-21
 Identities = 129/152 (84%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                       
Query: 229 ggtcgtgacgtcggacgggcagagcatggccgcgcactcctacgttcttgcctcggcgtc 288
           |||||| |||||||| ||| ||||||| ||| | || |||| |||||||| | |||||||
Sbjct: 57  ggtcgtcacgtcggatgggaagagcatcgccacacattccttcgttcttggcacggcgtc 116

                                                                       
Query: 289 gccggtgctggagcggatgatcgacagggcgcagggcgggtggggcgccgagtgcacca- 347
           ||||||||||||||||||||||||  |||| | | | ||||||  | ||||||||| || 
Sbjct: 117 gccggtgctggagcggatgatcgagcgggcacggcgggggtggaacaccgagtgcatcat 176

                                           
Query: 348 tccgcgtcctcggcgtgtcctacgacgccgtc 379
           |||||||||||||||| |||| ||||||||||
Sbjct: 177 tccgcgtcctcggcgtctcctccgacgccgtc 208
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>gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0072A12,
              complete sequence
          Length = 149347

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 86/99 (86%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                          
Query: 282    cggcgtcgccggtgctggagcggatgatcgacagggcgcagggcgggtggggcgccgagt 341
              |||||||||||||||||||||||||||||||  |||| | | | ||||||  | ||||||
Sbjct: 101100 cggcgtcgccggtgctggagcggatgatcgagcgggcacggcgggggtggaacaccgagt 101041

                                                     
Query: 342    gcacca-tccgcgtcctcggcgtgtcctacgacgccgtc 379
              ||| || |||||||||||||||| |||| ||||||||||
Sbjct: 101040 gcatcattccgcgtcctcggcgtctcctccgacgccgtc 101002
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 86/99 (86%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                            
Query: 282      cggcgtcgccggtgctggagcggatgatcgacagggcgcagggcgggtggggcgccgagt 341
                |||||||||||||||||||||||||||||||  |||| | | | ||||||  | ||||||
Sbjct: 14628638 cggcgtcgccggtgctggagcggatgatcgagcgggcacggcgggggtggaacaccgagt 14628579

                                                       
Query: 342      gcacca-tccgcgtcctcggcgtgtcctacgacgccgtc 379
                ||| || |||||||||||||||| |||| ||||||||||
Sbjct: 14628578 gcatcattccgcgtcctcggcgtctcctccgacgccgtc 14628540
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 86/99 (86%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                            
Query: 282      cggcgtcgccggtgctggagcggatgatcgacagggcgcagggcgggtggggcgccgagt 341
                |||||||||||||||||||||||||||||||  |||| | | | ||||||  | ||||||
Sbjct: 14636879 cggcgtcgccggtgctggagcggatgatcgagcgggcacggcgggggtggaacaccgagt 14636820

                                                       
Query: 342      gcacca-tccgcgtcctcggcgtgtcctacgacgccgtc 379
                ||| || |||||||||||||||| |||| ||||||||||
Sbjct: 14636819 gcatcattccgcgtcctcggcgtctcctccgacgccgtc 14636781
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>ref|XM_466540.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1086

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                 
Query: 259 cgcgcactcctacgttcttgcctcggcgtcgccggtgctggagcggatgatcga 312
           ||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  cgcgcactcgtctgttcttgcctcggcgtcgccggtgctggagcggatgatcga 137
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                                   
Query: 278      gcctcggcgtcgccggtgctggagcggatgatcga 312
                |||||||||||||||||||||||||||||||||||
Sbjct: 23192229 gcctcggcgtcgccggtgctggagcggatgatcga 23192263
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>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1568_B05
          Length = 115325

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                                
Query: 278   gcctcggcgtcgccggtgctggagcggatgatcga 312
             |||||||||||||||||||||||||||||||||||
Sbjct: 49460 gcctcggcgtcgccggtgctggagcggatgatcga 49494
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 288     cgccggtgctggagcggatgatcgacagggc 318
               |||||||||| ||||||||||||||||||||
Sbjct: 9518719 cgccggtgctagagcggatgatcgacagggc 9518749
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>dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0005L24
          Length = 155365

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 288   cgccggtgctggagcggatgatcgacagggc 318
             |||||||||| ||||||||||||||||||||
Sbjct: 48749 cgccggtgctagagcggatgatcgacagggc 48779
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>ref|XM_463586.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1044

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 272 gttcttgcctcggcgtcgccggtgctggag 301
           |||||||| |||||||||||||||||||||
Sbjct: 100 gttcttgcgtcggcgtcgccggtgctggag 129
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>dbj|AK067269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099J01, full
           insert sequence
          Length = 1446

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 272 gttcttgcctcggcgtcgccggtgctggag 301
           |||||||| |||||||||||||||||||||
Sbjct: 224 gttcttgcgtcggcgtcgccggtgctggag 253
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>gb|BC060763.1| Homo sapiens cDNA clone IMAGE:4825782, containing frame-shift errors
          Length = 3504

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 380  cacgccttcatccacttcctct 401
            ||||||||||||||||||||||
Sbjct: 2070 cacgccttcatccacttcctct 2049
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>emb|AL160176.3| Human DNA sequence from clone RP4-579F20 on chromosome 20 Contains the
             HMG1L1 gene for high-mobility group nonhistone chromosomal
             protein 1-like 1 and the 3' end of the CTCFL gene for
             CCCTC-binding factor (zinc finger protein)-like, complete
             sequence
          Length = 56912

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 380   cacgccttcatccacttcctct 401
             ||||||||||||||||||||||
Sbjct: 31241 cacgccttcatccacttcctct 31262
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>dbj|AK128070.1| Homo sapiens cDNA FLJ46191 fis, clone TESTI4005470, moderately
            similar to Transcriptional repressor CTCF
          Length = 3559

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 380  cacgccttcatccacttcctct 401
            ||||||||||||||||||||||
Sbjct: 2149 cacgccttcatccacttcctct 2128
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>ref|NM_080618.2| Homo sapiens CCCTC-binding factor (zinc finger protein)-like (CTCFL),
            mRNA
          Length = 3493

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 380  cacgccttcatccacttcctct 401
            ||||||||||||||||||||||
Sbjct: 2038 cacgccttcatccacttcctct 2017
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>gb|AF336042.1| Homo sapiens nuclear DNA binding factor (BORIS) mRNA, complete cds
          Length = 3500

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 380  cacgccttcatccacttcctct 401
            ||||||||||||||||||||||
Sbjct: 2045 cacgccttcatccacttcctct 2024
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>gb|AY071919.1| Homo sapiens zinc finger protein CTCF-T mRNA, complete cds
          Length = 3498

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 380  cacgccttcatccacttcctct 401
            ||||||||||||||||||||||
Sbjct: 2070 cacgccttcatccacttcctct 2049
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>emb|CR710133.2|CNS0GAW1 Tetraodon nigroviridis full-length cDNA
          Length = 509

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 155 gctggagtttggaagcgatca 175
           |||||||||||||||||||||
Sbjct: 377 gctggagtttggaagcgatca 357
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>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0497A05
          Length = 130919

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   tcggcgtcgccggtgctggag 301
             |||||||||||||||||||||
Sbjct: 92310 tcggcgtcgccggtgctggag 92330
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 281      tcggcgtcgccggtgctggag 301
                |||||||||||||||||||||
Sbjct: 39537868 tcggcgtcgccggtgctggag 39537888



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 282      cggcgtcgccggtgctggag 301
                ||||||||||||||||||||
Sbjct: 25738783 cggcgtcgccggtgctggag 25738764
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>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0456E05
          Length = 173699

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   tcggcgtcgccggtgctggag 301
             |||||||||||||||||||||
Sbjct: 18824 tcggcgtcgccggtgctggag 18844
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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1417F08
          Length = 155536

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 281    tcggcgtcgccggtgctggag 301
              |||||||||||||||||||||
Sbjct: 112882 tcggcgtcgccggtgctggag 112902
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 231     tcgtgacgtcggacgggcagagcatggccgcgc 263
               |||||||| ||||| ||||| ||||||||||||
Sbjct: 1013296 tcgtgacgccggactggcagggcatggccgcgc 1013264
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>ref|NM_192265.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cggcgtcgccggtgctggag 301
           ||||||||||||||||||||
Sbjct: 279 cggcgtcgccggtgctggag 260
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>gb|AC163636.5| Mus musculus BAC clone RP24-499E13 from chromosome 1, complete sequence
          Length = 173781

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   ccacttcctctactccccca 410
             ||||||||||||||||||||
Sbjct: 95658 ccacttcctctactccccca 95677
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>gb|AC162282.6| Mus musculus chromosome 8, clone RP23-154H18, complete sequence
          Length = 217566

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   cttcatccacttcctctact 404
             ||||||||||||||||||||
Sbjct: 37027 cttcatccacttcctctact 37008
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>gb|AC136101.2| Rattus norvegicus 4 BAC CH230-158D16 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 160605

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 394    cttcctctactcccccaagt 413
              ||||||||||||||||||||
Sbjct: 112210 cttcctctactcccccaagt 112191
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 369     acgacgccgtccacgccttc 388
               ||||||||||||||||||||
Sbjct: 3966322 acgacgccgtccacgccttc 3966341
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>gb|AC130527.4| Mus musculus BAC clone RP23-56C10 from chromosome 1, complete sequence
          Length = 233538

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   ccacttcctctactccccca 410
             ||||||||||||||||||||
Sbjct: 14651 ccacttcctctactccccca 14670
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>gb|AC102625.8| Mus musculus chromosome 8, clone RP23-453E3, complete sequence
          Length = 167288

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   cttcatccacttcctctact 404
             ||||||||||||||||||||
Sbjct: 85472 cttcatccacttcctctact 85491
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>gb|AC009346.5|AC009346 Drosophila melanogaster, chromosome 3R, region 83A-83B, BAC clone
             BACR03P13, complete sequence
          Length = 168448

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   cgccttcatccacttcctct 401
             ||||||||||||||||||||
Sbjct: 75329 cgccttcatccacttcctct 75310
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>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039G05
          Length = 138429

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   cggcgtcgccggtgctggag 301
             ||||||||||||||||||||
Sbjct: 41247 cggcgtcgccggtgctggag 41228
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>dbj|AK069831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027B09, full
           insert sequence
          Length = 1661

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cggcgtcgccggtgctggag 301
           ||||||||||||||||||||
Sbjct: 310 cggcgtcgccggtgctggag 291
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>gb|AE003602.4| Drosophila melanogaster chromosome 3R, section 6 of 118 of the complete
              sequence
          Length = 326091

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    cgccttcatccacttcctct 401
              ||||||||||||||||||||
Sbjct: 235400 cgccttcatccacttcctct 235381


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,089,974
Number of Sequences: 3902068
Number of extensions: 2089974
Number of successful extensions: 44993
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44661
Number of HSP's gapped (non-prelim): 328
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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