ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast70g05 |
|---|---|
| Clone Library Name | barley_pub |
>HEM1_SYNPX (Q7U769) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 432 Score = 33.1 bits (74), Expect = 0.27 Identities = 19/54 (35%), Positives = 30/54 (55%) Frame = +2 Query: 143 VDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELSVASPASSLQNSL 304 VDDLQE+ + Q AR ++ + +A L +Q Q EW D L + L++S+ Sbjct: 309 VDDLQEVVARNQEAR-QAMAREAEQLLQQEAQQFLEWWDSLEAVPTINRLRSSM 361
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 31.2 bits (69), Expect = 1.0 Identities = 22/57 (38%), Positives = 29/57 (50%) Frame = -3 Query: 291 REEAGEATLSSSRHSRSIWWTCSSRTAASAERLSLRADWRPEKISWRSSTRVLARSR 121 RE A+ SSS HS W+ S + SA S R +R + S RS +R +RSR Sbjct: 481 RERRSRASSSSSHHSSKRDWSKSDQDDGSASTHSSRDSYRSKSHS-RSDSRGSSRSR 536
>PCNT_MOUSE (P48725) Pericentrin| Length = 1920 Score = 30.4 bits (67), Expect = 1.8 Identities = 14/51 (27%), Positives = 30/51 (58%) Frame = +2 Query: 128 RAKTRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELSVASP 280 R + +D+L+ + LQ +++ + D A EQ+H+++ + + ELS+ P Sbjct: 1432 RRNSEIDELKSLIENLQENQRQLQK-DKAEEIEQLHEVIEKLQSELSLMGP 1481
>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)| Length = 3336 Score = 29.6 bits (65), Expect = 3.0 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 9/96 (9%) Frame = +2 Query: 137 TRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELSVASP---------ASS 289 + +++L+ LQ +K + A +E Q+H+++ + + ELS+ P A S Sbjct: 1712 SEIEELKATIENLQENQKRLQKEKAEEIE-QLHEVIEKLQHELSLMGPVVHEVSDSQAGS 1770 Query: 290 LQNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKL 397 LQ+ L +Q A P + L+ A E +A S+L Sbjct: 1771 LQSELLCSQ-AGGPRGQALQGELEAALEAKEALSRL 1805
>METH_SYNY3 (Q55786) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1195 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +2 Query: 149 DLQEIFSG---LQSARKESRSADAAVLEEQVHQMLREWRDEL 265 DLQ +F G + R++SR L E+VH +L EW+ ++ Sbjct: 945 DLQALFVGQWQFRKPREQSREEYEQFLAEKVHPILAEWKGKV 986
>ECO_DROME (Q9VS50) N-acetyltransferase eco (EC 2.3.1.-) (Establishment of| cohesion 1 homolog) (ECO1 homolog) Length = 1052 Score = 29.6 bits (65), Expect = 3.0 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Frame = +2 Query: 149 DLQEIFSGLQSARKES-----RSADAAVLEEQVHQMLREWRDELSVASPASSLQNSLGNN 313 D+ I + L + R ++ R A V E+VHQ+LR +D + +A P S ++ NN Sbjct: 475 DMDNILNSLSNERLKNLITTKREERAKV--EEVHQILRNAKDPIKMAKPLSVIEADDANN 532
>HEM1_SYNY3 (P28463) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 427 Score = 29.6 bits (65), Expect = 3.0 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = +2 Query: 143 VDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELSVASPASSLQNSL 304 VDDL+E+ + Q++R++ A+LEE++ WR L SSL++ + Sbjct: 300 VDDLKEVVAQNQASRRQMARQAEALLEEEIAAFDLWWR-SLETVPTISSLRSKV 352
>DMBT1_PIG (Q4A3R3) Deleted in malignant brain tumors 1 protein precursor| Length = 1204 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 14/86 (16%) Frame = -3 Query: 315 WLFPSEFWR-------EEAGEATLSSSRHSRSI--WWTCSSRTAASAERLSLRADWRP-- 169 W P W+ E+AG + R S I WW ++R+ + R ++ A W P Sbjct: 161 WSCPHSGWKTHNCGHQEDAGVICSGAQRSSTVIPDWWYTTTRSQTAHIRSTIPAWWHPTT 220 Query: 168 ---EKISWRSSTRVLARSRNCWWRVD 100 + W + R++ C RV+ Sbjct: 221 TTAARTEWDLALRLVNGGDRCQGRVE 246
>PER3_MOUSE (O70361) Period circadian protein 3 (mPER3)| Length = 1113 Score = 29.3 bits (64), Expect = 3.9 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +2 Query: 128 RAKTRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELSVASPASSLQNSLG 307 R K R L E + + S D A L+EQ+H++L + V + ASS SLG Sbjct: 369 RHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLLLQ-----PVHASASSGYGSLG 423 Query: 308 NN 313 ++ Sbjct: 424 SS 425
>FRAP_RAT (P42346) FKBP12-rapamycin complex-associated protein (FK506-binding| protein 12-rapamycin complex-associated protein 1) (Rapamycin target protein) (RAPT1) (Mammalian target of rapamycin) (MTOR) Length = 2549 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +2 Query: 137 TRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELS 268 + V LQ+ SGL+S +E+R+ A L+ V LRE E S Sbjct: 17 SNVSVLQQFASGLKSRNEETRAKAAKELQHYVTMELREMSQEES 60
>FRAP_MOUSE (Q9JLN9) FKBP12-rapamycin complex-associated protein (FK506-binding| protein 12-rapamycin complex-associated protein 1) (Rapamycin target protein) (RAPT1) (Mammalian target of rapamycin) (MTOR) Length = 2549 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +2 Query: 137 TRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELS 268 + V LQ+ SGL+S +E+R+ A L+ V LRE E S Sbjct: 17 SNVSVLQQFASGLKSRNEETRAKAAKELQHYVTMELREMSQEES 60
>FRAP_HUMAN (P42345) FKBP12-rapamycin complex-associated protein (FK506-binding| protein 12-rapamycin complex-associated protein 1) (Rapamycin target protein) (RAPT1) (Mammalian target of rapamycin) (MTOR) Length = 2549 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +2 Query: 137 TRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELS 268 + V LQ+ SGL+S +E+R+ A L+ V LRE E S Sbjct: 17 SNVSVLQQFASGLKSRNEETRAKAAKELQHYVTMELREMSQEES 60
>NRFA_WOLSU (Q9S1E5) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming| cytochrome c nitrite reductase) (Cytochrome c nitrite reductase) Length = 507 Score = 28.9 bits (63), Expect = 5.1 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 10/107 (9%) Frame = +2 Query: 113 QQFRDRAKT---RVDDLQEI-FSGLQSARKESRSA------DAAVLEEQVHQMLREWRDE 262 Q+ +D K R + LQ+I F + A E+ A DA + E + H +WR + Sbjct: 335 QKLKDIVKQKFERKEFLQDIAFDNIGKAHLETGKAMELGATDAELKEIRTHIRHAQWRAD 394 Query: 263 LSVASPASSLQNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQ 403 +++A S P E LRLL EE A KL + Sbjct: 395 MAIAGHGSFFH-----------APEEVLRLLASGNEEAQKARIKLVK 430
>HEM1_SYNEL (Q8DI53) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 426 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 143 VDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREW 253 VDDLQ + + Q AR++ +LEE++ L W Sbjct: 301 VDDLQAVVAQNQEARRQLAQEAEGILEEELETFLAWW 337
>CEF1_ASHGO (Q756C3) Pre-mRNA-splicing factor CEF1| Length = 477 Score = 28.5 bits (62), Expect = 6.7 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = +2 Query: 104 TRHQQFRDRAKTRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREW--RDELSVAS 277 T ++ RDRA + Q G ++ARK+SR+ A EQ +R R L + Sbjct: 213 TANEAARDRAAREAYERQIEARGKRTARKQSRAPARAPATEQPALQVRRAIPRPPLELPV 272 Query: 278 PASSLQNS 301 P + L+NS Sbjct: 273 PEALLKNS 280
>NRFA_SALTY (Q8ZKF5) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming| cytochrome c nitrite reductase) (Cytochrome c nitrite reductase) Length = 478 Score = 28.5 bits (62), Expect = 6.7 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Frame = +2 Query: 134 KTRVDDLQ-EIFSGLQSARKESRSA-DAAVLEEQVHQMLRE-----WRDELSVASPASSL 292 K + DL+ ++ L A E+++A DA + ++ +L + WR +L++AS + Sbjct: 333 KQAIHDLKIKVEDQLVHAHFEAKAAWDAGATDAEMKPILNDIRHAQWRWDLAIASHGIHM 392 Query: 293 QNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQ 403 P E LR+L A+++ DA +KLA+ Sbjct: 393 H-----------APEEGLRMLGSAMDKAADARTKLAR 418
>NRFA_SALTI (Q8Z1Q9) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming| cytochrome c nitrite reductase) (Cytochrome c nitrite reductase) Length = 478 Score = 28.5 bits (62), Expect = 6.7 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Frame = +2 Query: 134 KTRVDDLQ-EIFSGLQSARKESRSA-DAAVLEEQVHQMLRE-----WRDELSVASPASSL 292 K + DL+ ++ L A E+++A DA + ++ +L + WR +L++AS + Sbjct: 333 KQAIHDLKIKVEDQLVHAHFEAKAAWDAGATDAEMKPILNDIRHAQWRWDLAIASHGIHM 392 Query: 293 QNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQ 403 P E LR+L A+++ DA +KLA+ Sbjct: 393 H-----------APEEGLRMLGSAMDKAADARTKLAR 418
>MYSM1_CHICK (Q5F3F2) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing| protein 1) Length = 832 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 299 SLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQPMQPS 418 S GN +G ADP +++ +L+ +EE D T + + P+ Sbjct: 197 SAGNLRGRADPNLNAVKIEKLSDDEEVDITDDMDELFSPA 236
>NRFA_ECOLI (P0ABK9) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming| cytochrome c nitrite reductase) (Cytochrome c nitrite reductase) Length = 478 Score = 28.1 bits (61), Expect = 8.8 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Frame = +2 Query: 134 KTRVDDLQ-EIFSGLQSARKESRSA-DAAVLEEQVHQML-----REWRDELSVASPASSL 292 K ++DL+ ++ L A E+++A DA E ++ + +WR +L++AS + Sbjct: 333 KQSINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHM 392 Query: 293 QNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQ 403 P E LR+L A+++ DA +KLA+ Sbjct: 393 H-----------APEEGLRMLGTAMDKAADARTKLAR 418
>NRFA_ECO57 (P0ABL0) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming| cytochrome c nitrite reductase) (Cytochrome c nitrite reductase) Length = 478 Score = 28.1 bits (61), Expect = 8.8 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Frame = +2 Query: 134 KTRVDDLQ-EIFSGLQSARKESRSA-DAAVLEEQVHQML-----REWRDELSVASPASSL 292 K ++DL+ ++ L A E+++A DA E ++ + +WR +L++AS + Sbjct: 333 KQSINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHM 392 Query: 293 QNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQ 403 P E LR+L A+++ DA +KLA+ Sbjct: 393 H-----------APEEGLRMLGTAMDKAADARTKLAR 418 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.310 0.130 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,691,207 Number of Sequences: 219361 Number of extensions: 312074 Number of successful extensions: 1460 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1445 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1460 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
