| Clone Name | bast70g05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004H20, full insert sequence Length = 2399 Score = 317 bits (160), Expect = 2e-83 Identities = 266/301 (88%), Gaps = 9/301 (2%) Strand = Plus / Plus Query: 105 cgcgccaccagcagttccgcgaccgcgccaagacccgcgtggacgacctccaggagatct 164 |||| ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| | Sbjct: 183 cgcggcaccagcagttccgcaacctcgccaagacccgcgtcgacgacctccaggagatgt 242 Query: 165 tctccggcctccagtccgcccgcaaggagagccgctccgcagacgccgccgtcctcgagg 224 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct: 243 tctccggcctccagtccgcccgcaaggagagccgctccgccgacgccgccctcctcgagg 302 Query: 225 agcaggtccaccagatgctccgagagtggcgggacgagctcagcgtcgcctcccccgcct 284 ||||||||||||| |||||||| |||||||| | |||||||| |||| |||||||||||| Sbjct: 303 agcaggtccaccacatgctccgggagtggcgcgccgagctcaacgtcccctcccccgcct 362 Query: 285 cctccctccagaac------tcgctggggaacaaccagggtgccgcggatccgccgtcgg 338 |||||||||||||| |||| ||| ||||||| || || |||||||||| |||| Sbjct: 363 cctccctccagaactctcagtcgcagggtaacaaccgggaggcgtcggatccgccatcgg 422 Query: 339 agacgctgcggctgctgcagctggc---gattgaggaggaggacgacgccaccagcaagc 395 ||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||| Sbjct: 423 agacgctgcggttgctgcagctggccggggccgaggaggaggatgacgccaccagcaagc 482 Query: 396 t 396 | Sbjct: 483 t 483
>gb|AY740527.1| Zea mays expressed protein DH12 mRNA, complete cds Length = 2313 Score = 280 bits (141), Expect = 4e-72 Identities = 266/307 (86%), Gaps = 3/307 (0%) Strand = Plus / Plus Query: 93 cccgctcgtcgacgcgccaccagcagttccgcgaccgcgccaagacccgcgtggacgacc 152 |||||||||||||||| |||| |||||||||||||| |||||| ||| || ||||||| Sbjct: 74 cccgctcgtcgacgcggcaccgtcagttccgcgaccgagccaaggtccgagtcgacgacc 133 Query: 153 tccaggagatcttctccggcctccagtccgcccgcaaggagagccgctccgcagacgccg 212 | || ||||| |||| ||||||||| ||||| |||||||||||||||||||| ||||||| Sbjct: 134 tacaagagatgttctgcggcctccaatccgctcgcaaggagagccgctccgccgacgccg 193 Query: 213 ccgtcctcgaggagcaggtccaccagatgctccgagagtggcgggacgagctcagcgtcg 272 | |||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| Sbjct: 194 ctgtcctcgaggagcaggtccaccagatgctccgcgagtggcgtgccgagctcagcgtcc 253 Query: 273 cctcccccgcctcctccctccagaactcgctggggaacaaccagggtgccgcggatccgc 332 | ||||| || ||||| ||||||||||||| ||||||||||| || || ||||||| | Sbjct: 254 catccccggcttcctctctccagaactcgcaggggaacaaccgggaggcttcggatccac 313 Query: 333 cgtcggagacgctgcggctgctgcagctggcgat---tgaggaggaggacgacgccacca 389 ||||||| |||||||| ||||||||||||||| | |||||||||||||| |||| || Sbjct: 314 cgtcggatacgctgcgactgctgcagctggcggtgcccgaggaggaggacgatgccagca 373 Query: 390 gcaagct 396 | ||||| Sbjct: 374 gtaagct 380
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06, complete sequence Length = 142068 Score = 276 bits (139), Expect = 5e-71 Identities = 178/191 (93%) Strand = Plus / Plus Query: 105 cgcgccaccagcagttccgcgaccgcgccaagacccgcgtggacgacctccaggagatct 164 |||| ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| | Sbjct: 110111 cgcggcaccagcagttccgcaacctcgccaagacccgcgtcgacgacctccaggagatgt 110170 Query: 165 tctccggcctccagtccgcccgcaaggagagccgctccgcagacgccgccgtcctcgagg 224 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct: 110171 tctccggcctccagtccgcccgcaaggagagccgctccgccgacgccgccctcctcgagg 110230 Query: 225 agcaggtccaccagatgctccgagagtggcgggacgagctcagcgtcgcctcccccgcct 284 ||||||||||||| |||||||| |||||||| | |||||||| |||| |||||||||||| Sbjct: 110231 agcaggtccaccacatgctccgggagtggcgcgccgagctcaacgtcccctcccccgcct 110290 Query: 285 cctccctccag 295 ||||||||||| Sbjct: 110291 cctccctccag 110301 Score = 75.8 bits (38), Expect = 1e-10 Identities = 67/76 (88%), Gaps = 3/76 (3%) Strand = Plus / Plus Query: 324 cggatccgccgtcggagacgctgcggctgctgcagctggc---gattgaggaggaggacg 380 |||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| | Sbjct: 110423 cggatccgccatcggagacgctgcggttgctgcagctggccggggccgaggaggaggatg 110482 Query: 381 acgccaccagcaagct 396 |||||||||||||||| Sbjct: 110483 acgccaccagcaagct 110498
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10, complete sequence Length = 143073 Score = 276 bits (139), Expect = 5e-71 Identities = 178/191 (93%) Strand = Plus / Plus Query: 105 cgcgccaccagcagttccgcgaccgcgccaagacccgcgtggacgacctccaggagatct 164 |||| ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| | Sbjct: 15868 cgcggcaccagcagttccgcaacctcgccaagacccgcgtcgacgacctccaggagatgt 15927 Query: 165 tctccggcctccagtccgcccgcaaggagagccgctccgcagacgccgccgtcctcgagg 224 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct: 15928 tctccggcctccagtccgcccgcaaggagagccgctccgccgacgccgccctcctcgagg 15987 Query: 225 agcaggtccaccagatgctccgagagtggcgggacgagctcagcgtcgcctcccccgcct 284 ||||||||||||| |||||||| |||||||| | |||||||| |||| |||||||||||| Sbjct: 15988 agcaggtccaccacatgctccgggagtggcgcgccgagctcaacgtcccctcccccgcct 16047 Query: 285 cctccctccag 295 ||||||||||| Sbjct: 16048 cctccctccag 16058 Score = 75.8 bits (38), Expect = 1e-10 Identities = 67/76 (88%), Gaps = 3/76 (3%) Strand = Plus / Plus Query: 324 cggatccgccgtcggagacgctgcggctgctgcagctggc---gattgaggaggaggacg 380 |||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| | Sbjct: 16180 cggatccgccatcggagacgctgcggttgctgcagctggccggggccgaggaggaggatg 16239 Query: 381 acgccaccagcaagct 396 |||||||||||||||| Sbjct: 16240 acgccaccagcaagct 16255
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 276 bits (139), Expect = 5e-71 Identities = 178/191 (93%) Strand = Plus / Plus Query: 105 cgcgccaccagcagttccgcgaccgcgccaagacccgcgtggacgacctccaggagatct 164 |||| ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| | Sbjct: 25375507 cgcggcaccagcagttccgcaacctcgccaagacccgcgtcgacgacctccaggagatgt 25375566 Query: 165 tctccggcctccagtccgcccgcaaggagagccgctccgcagacgccgccgtcctcgagg 224 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct: 25375567 tctccggcctccagtccgcccgcaaggagagccgctccgccgacgccgccctcctcgagg 25375626 Query: 225 agcaggtccaccagatgctccgagagtggcgggacgagctcagcgtcgcctcccccgcct 284 ||||||||||||| |||||||| |||||||| | |||||||| |||| |||||||||||| Sbjct: 25375627 agcaggtccaccacatgctccgggagtggcgcgccgagctcaacgtcccctcccccgcct 25375686 Query: 285 cctccctccag 295 ||||||||||| Sbjct: 25375687 cctccctccag 25375697 Score = 75.8 bits (38), Expect = 1e-10 Identities = 67/76 (88%), Gaps = 3/76 (3%) Strand = Plus / Plus Query: 324 cggatccgccgtcggagacgctgcggctgctgcagctggc---gattgaggaggaggacg 380 |||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| | Sbjct: 25375819 cggatccgccatcggagacgctgcggttgctgcagctggccggggccgaggaggaggatg 25375878 Query: 381 acgccaccagcaagct 396 |||||||||||||||| Sbjct: 25375879 acgccaccagcaagct 25375894 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ctccgcagacgccgccgtcct 219 ||||||||||||||||||||| Sbjct: 14376951 ctccgcagacgccgccgtcct 14376971
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 190 bits (96), Expect = 3e-45 Identities = 170/194 (87%), Gaps = 3/194 (1%) Strand = Plus / Minus Query: 105 cgcgccaccagcagttccgcgaccgcgccaagacccgcgtggacgacctccaggagatct 164 |||| |||||||||||| | | ||||||||||||||||| ||||||||||||||||| | Sbjct: 31590070 cgcggcaccagcagttcagggcgcgcgccaagacccgcgtcgacgacctccaggagatgt 31590011 Query: 165 tctccggcctccagtccgcccgcaaggagagccgctccgcagacgccgccgtcctcgagg 224 ||||||| ||||||||||| ||||||||| ||||||| | ||||||||||| ||||||| Sbjct: 31590010 tctccgggctccagtccgcgcgcaaggaggcccgctccaccgacgccgccgttctcgagg 31589951 Query: 225 agcaggtccaccagatgctccgagagtggcgggacgagctcagcgt---cgcctcccccg 281 |||| |||||||||||||||| |||||||| | |||||||||||| | ||||||| | Sbjct: 31589950 cgcagctccaccagatgctccgcgagtggcgcgccgagctcagcgtctcctcctccccgg 31589891 Query: 282 cctcctccctccag 295 |||||||||||||| Sbjct: 31589890 cctcctccctccag 31589877 Score = 87.7 bits (44), Expect = 3e-14 Identities = 70/79 (88%), Gaps = 6/79 (7%) Strand = Plus / Minus Query: 324 cggatccgccgtcggagacgctgcggctgctgcagctggcgattg------aggaggagg 377 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 31589756 cggatccgccgtcggagacgctgcggctgctgcagctggcggcggccgaggaggaggagg 31589697 Query: 378 acgacgccaccagcaagct 396 ||||||||||||||||||| Sbjct: 31589696 acgacgccaccagcaagct 31589678
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 190 bits (96), Expect = 3e-45 Identities = 170/194 (87%), Gaps = 3/194 (1%) Strand = Plus / Minus Query: 105 cgcgccaccagcagttccgcgaccgcgccaagacccgcgtggacgacctccaggagatct 164 |||| |||||||||||| | | ||||||||||||||||| ||||||||||||||||| | Sbjct: 3802 cgcggcaccagcagttcagggcgcgcgccaagacccgcgtcgacgacctccaggagatgt 3743 Query: 165 tctccggcctccagtccgcccgcaaggagagccgctccgcagacgccgccgtcctcgagg 224 ||||||| ||||||||||| ||||||||| ||||||| | ||||||||||| ||||||| Sbjct: 3742 tctccgggctccagtccgcgcgcaaggaggcccgctccaccgacgccgccgttctcgagg 3683 Query: 225 agcaggtccaccagatgctccgagagtggcgggacgagctcagcgt---cgcctcccccg 281 |||| |||||||||||||||| |||||||| | |||||||||||| | ||||||| | Sbjct: 3682 cgcagctccaccagatgctccgcgagtggcgcgccgagctcagcgtctcctcctccccgg 3623 Query: 282 cctcctccctccag 295 |||||||||||||| Sbjct: 3622 cctcctccctccag 3609 Score = 87.7 bits (44), Expect = 3e-14 Identities = 70/79 (88%), Gaps = 6/79 (7%) Strand = Plus / Minus Query: 324 cggatccgccgtcggagacgctgcggctgctgcagctggcgattg------aggaggagg 377 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 3488 cggatccgccgtcggagacgctgcggctgctgcagctggcggcggccgaggaggaggagg 3429 Query: 378 acgacgccaccagcaagct 396 ||||||||||||||||||| Sbjct: 3428 acgacgccaccagcaagct 3410
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 190 bits (96), Expect = 3e-45 Identities = 170/194 (87%), Gaps = 3/194 (1%) Strand = Plus / Minus Query: 105 cgcgccaccagcagttccgcgaccgcgccaagacccgcgtggacgacctccaggagatct 164 |||| |||||||||||| | | ||||||||||||||||| ||||||||||||||||| | Sbjct: 103093 cgcggcaccagcagttcagggcgcgcgccaagacccgcgtcgacgacctccaggagatgt 103034 Query: 165 tctccggcctccagtccgcccgcaaggagagccgctccgcagacgccgccgtcctcgagg 224 ||||||| ||||||||||| ||||||||| ||||||| | ||||||||||| ||||||| Sbjct: 103033 tctccgggctccagtccgcgcgcaaggaggcccgctccaccgacgccgccgttctcgagg 102974 Query: 225 agcaggtccaccagatgctccgagagtggcgggacgagctcagcgt---cgcctcccccg 281 |||| |||||||||||||||| |||||||| | |||||||||||| | ||||||| | Sbjct: 102973 cgcagctccaccagatgctccgcgagtggcgcgccgagctcagcgtctcctcctccccgg 102914 Query: 282 cctcctccctccag 295 |||||||||||||| Sbjct: 102913 cctcctccctccag 102900 Score = 87.7 bits (44), Expect = 3e-14 Identities = 70/79 (88%), Gaps = 6/79 (7%) Strand = Plus / Minus Query: 324 cggatccgccgtcggagacgctgcggctgctgcagctggcgattg------aggaggagg 377 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 102779 cggatccgccgtcggagacgctgcggctgctgcagctggcggcggccgaggaggaggagg 102720 Query: 378 acgacgccaccagcaagct 396 ||||||||||||||||||| Sbjct: 102719 acgacgccaccagcaagct 102701
>ref|NM_191259.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1911 Score = 168 bits (85), Expect = 9e-39 Identities = 127/141 (90%) Strand = Plus / Plus Query: 128 cgcgccaagacccgcgtggacgacctccaggagatcttctccggcctccagtccgcccgc 187 ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||| Sbjct: 304 cgcgccaagacccgcgtcgacgacctccaggagatgttctccgggctccagtccgcgcgc 363 Query: 188 aaggagagccgctccgcagacgccgccgtcctcgaggagcaggtccaccagatgctccga 247 |||||| ||||||| | ||||||||||| ||||||| |||| |||||||||||||||| Sbjct: 364 aaggaggcccgctccaccgacgccgccgttctcgaggcgcagctccaccagatgctccgc 423 Query: 248 gagtggcgggacgagctcagc 268 |||||||| | |||||||||| Sbjct: 424 gagtggcgcgccgagctcagc 444 Score = 87.7 bits (44), Expect = 3e-14 Identities = 70/79 (88%), Gaps = 6/79 (7%) Strand = Plus / Plus Query: 324 cggatccgccgtcggagacgctgcggctgctgcagctggcgattg------aggaggagg 377 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 467 cggatccgccgtcggagacgctgcggctgctgcagctggcggcggccgaggaggaggagg 526 Query: 378 acgacgccaccagcaagct 396 ||||||||||||||||||| Sbjct: 527 acgacgccaccagcaagct 545
>ref|XM_548832.2| PREDICTED: Canis familiaris similar to DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1 (LOC491712), mRNA Length = 3274 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 337 ggagacgctgcggctgctgcagctgg 362 ||||||||||||||||| |||||||| Sbjct: 1566 ggagacgctgcggctgcagcagctgg 1591
>emb|AL138827.16| Human DNA sequence from clone RP11-156F23 on chromosome 6 Contains the CGA gene for glycoprotein hormones, alpha polypeptide and a 60S ribosomal protein L21 (RPL21) pseudogene, complete sequence Length = 80844 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 272 gcctcccccgcctcctccctcc 293 |||||||||||||||||||||| Sbjct: 20620 gcctcccccgcctcctccctcc 20599
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12, complete sequence Length = 102029 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ctccgcagacgccgccgtcct 219 ||||||||||||||||||||| Sbjct: 7659 ctccgcagacgccgccgtcct 7679
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01, complete sequence Length = 117724 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ctccgcagacgccgccgtcct 219 ||||||||||||||||||||| Sbjct: 105737 ctccgcagacgccgccgtcct 105757
>gb|AC121292.9| Mus musculus chromosome 1, clone RP23-172B15, complete sequence Length = 193192 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 ccgcagacgccgccgtcctcg 221 ||||||||||||||||||||| Sbjct: 166543 ccgcagacgccgccgtcctcg 166523
>gb|BC060602.1| Mus musculus acyl-Coenzyme A binding domain containing 3, mRNA (cDNA clone MGC:79166 IMAGE:5706182), complete cds Length = 3405 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 ccgcagacgccgccgtcctcg 221 ||||||||||||||||||||| Sbjct: 114 ccgcagacgccgccgtcctcg 134
>ref|NM_133225.1| Mus musculus acyl-Coenzyme A binding domain containing 3 (Acbd3), mRNA Length = 3433 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 ccgcagacgccgccgtcctcg 221 ||||||||||||||||||||| Sbjct: 160 ccgcagacgccgccgtcctcg 180
>ref|XM_813063.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508501.310) partial mRNA Length = 3891 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 tcccccgcctcctccctccag 295 ||||||||||||||||||||| Sbjct: 2933 tcccccgcctcctccctccag 2913
>emb|Z11165.1|RCPHSYNG R.capsulatus complete photosynthesis gene cluster Length = 45959 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 gacgcgccaccagcagttccg 123 ||||||||||||||||||||| Sbjct: 38929 gacgcgccaccagcagttccg 38909
>gb|AF022770.3| Mus musculus peripherial benzodiazepine receptor associated protein (Pap7) mRNA, complete cds Length = 1724 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 ccgcagacgccgccgtcctcg 221 ||||||||||||||||||||| Sbjct: 160 ccgcagacgccgccgtcctcg 180
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 cgctgcggctgctgcagctgg 362 ||||||||||||||||||||| Sbjct: 4485877 cgctgcggctgctgcagctgg 4485897
>dbj|AK168799.1| Mus musculus 17 days embryo stomach cDNA, RIKEN full-length enriched library, clone:I920055M10 product:acyl-Coenzyme A binding domain containing 3, full insert sequence Length = 3147 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 ccgcagacgccgccgtcctcg 221 ||||||||||||||||||||| Sbjct: 131 ccgcagacgccgccgtcctcg 151
>dbj|AK167272.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0048M22 product:acyl-Coenzyme A binding domain containing 3, full insert sequence Length = 1421 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 ccgcagacgccgccgtcctcg 221 ||||||||||||||||||||| Sbjct: 141 ccgcagacgccgccgtcctcg 161
>gb|AF501319.1| Mus musculus peripherial benzodiazepine receptor associated protein PAP7 (Pap7) gene, complete cds Length = 18140 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 ccgcagacgccgccgtcctcg 221 ||||||||||||||||||||| Sbjct: 1413 ccgcagacgccgccgtcctcg 1433
>dbj|AK030371.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330404D19 product:GOLGI RESIDENT PROTEIN GCP60 homolog [Homo sapiens], full insert sequence Length = 3433 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 ccgcagacgccgccgtcctcg 221 ||||||||||||||||||||| Sbjct: 160 ccgcagacgccgccgtcctcg 180
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 cctcccccgcctcctccctcc 293 ||||||||||||||||||||| Sbjct: 6450346 cctcccccgcctcctccctcc 6450366
>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_D05 Length = 128178 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 cctcccccgcctcctccctcc 293 ||||||||||||||||||||| Sbjct: 92339 cctcccccgcctcctccctcc 92359
>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1307A11 Length = 131538 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 cctcccccgcctcctccctcc 293 ||||||||||||||||||||| Sbjct: 10959 cctcccccgcctcctccctcc 10979
>dbj|AK105270.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F07, full insert sequence Length = 1528 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ctccgcagacgccgccgtcct 219 ||||||||||||||||||||| Sbjct: 57 ctccgcagacgccgccgtcct 77
>dbj|AK071944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087B05, full insert sequence Length = 1533 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ctccgcagacgccgccgtcct 219 ||||||||||||||||||||| Sbjct: 62 ctccgcagacgccgccgtcct 82
>gb|AY866380.1| Aphanomyces helicoides strain CBS 210.82 CHI1 (chi1) gene, partial cds Length = 423 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 259 cgagctcagcgtcgcctcccc 279 ||||||||||||||||||||| Sbjct: 333 cgagctcagcgtcgcctcccc 353
>gb|AC167020.3| Mus musculus BAC clone RP23-201I6 from chromosome 1, complete sequence Length = 209249 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 ccgcagacgccgccgtcctcg 221 ||||||||||||||||||||| Sbjct: 163651 ccgcagacgccgccgtcctcg 163671
>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster Length = 162249 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 gtcctcgaggagcaggtccaccag 238 |||||||||||||||| ||||||| Sbjct: 111012 gtcctcgaggagcaggaccaccag 110989
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ctcccccgcctcctccctcc 293 |||||||||||||||||||| Sbjct: 1260014 ctcccccgcctcctccctcc 1260033
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 caccagcaagctggcgcagccgat 408 ||||||||| |||||||||||||| Sbjct: 1835554 caccagcaacctggcgcagccgat 1835531
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gattgaggaggaggacgacg 383 |||||||||||||||||||| Sbjct: 13820142 gattgaggaggaggacgacg 13820161 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gattgaggaggaggacgacg 383 |||||||||||||||||||| Sbjct: 13820100 gattgaggaggaggacgacg 13820119
>ref|XM_803529.1| Trypanosoma cruzi strain CL Brener haloacid dehalogenase-like hydrolase (Tc00.1047053506931.10) partial mRNA Length = 936 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cggagacgctgcggctgctg 355 |||||||||||||||||||| Sbjct: 182 cggagacgctgcggctgctg 201
>ref|XM_804539.1| Trypanosoma cruzi strain CL Brener haloacid dehalogenase-like hydrolase (Tc00.1047053510131.40) partial mRNA Length = 936 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cggagacgctgcggctgctg 355 |||||||||||||||||||| Sbjct: 182 cggagacgctgcggctgctg 201
>emb|CR701845.1|CNS0G4HT Tetraodon nigroviridis full-length cDNA Length = 1661 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tcttctccggcctccagtcc 181 |||||||||||||||||||| Sbjct: 958 tcttctccggcctccagtcc 939
>emb|CR683338.2|CNS0FQ7Q Tetraodon nigroviridis full-length cDNA Length = 1329 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tcttctccggcctccagtcc 181 |||||||||||||||||||| Sbjct: 620 tcttctccggcctccagtcc 601
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 gacgccaccagcaagctggcgcag 403 ||||||||||||||| |||||||| Sbjct: 2022292 gacgccaccagcaaggtggcgcag 2022269
>ref|XM_500551.1| Yarrowia lipolytica CLIB122, YALI0B05940g predicted mRNA Length = 9963 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gagcaggtccaccagatgct 243 |||||||||||||||||||| Sbjct: 1125 gagcaggtccaccagatgct 1106
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 cgctgcggctgctgcagctg 361 |||||||||||||||||||| Sbjct: 1720196 cgctgcggctgctgcagctg 1720177
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 tcgaggagcaggtccaccag 238 |||||||||||||||||||| Sbjct: 351564 tcgaggagcaggtccaccag 351583
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16 Length = 349640 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cagcagttccgcgaccgcgc 132 |||||||||||||||||||| Sbjct: 157850 cagcagttccgcgaccgcgc 157869
>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 Length = 2356219 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cgcctcccccgcctcctccc 290 |||||||||||||||||||| Sbjct: 1602983 cgcctcccccgcctcctccc 1603002
>gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0020E23, complete sequence Length = 151359 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 cgctgcggctgctgcagctg 361 |||||||||||||||||||| Sbjct: 117293 cgctgcggctgctgcagctg 117274
>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048D11, from chromosome 3, complete sequence Length = 158911 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gattgaggaggaggacgacg 383 |||||||||||||||||||| Sbjct: 96670 gattgaggaggaggacgacg 96689 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gattgaggaggaggacgacg 383 |||||||||||||||||||| Sbjct: 96628 gattgaggaggaggacgacg 96647
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 cgctgcggctgctgcagctg 361 |||||||||||||||||||| Sbjct: 1720196 cgctgcggctgctgcagctg 1720177
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gattgaggaggaggacgacg 383 |||||||||||||||||||| Sbjct: 13815117 gattgaggaggaggacgacg 13815136 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gattgaggaggaggacgacg 383 |||||||||||||||||||| Sbjct: 13815075 gattgaggaggaggacgacg 13815094
>dbj|AB213024.1| Desulfovibrio vulgaris rrm-1, rpL31, hyp001, prfA, hemk genes for rRNA methylase, ribosomal protein L31, hypothetical protein, peptide release factor 1, HemK protein, complete cds Length = 5528 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 cgcgccaccagcagttccgc 124 |||||||||||||||||||| Sbjct: 4405 cgcgccaccagcagttccgc 4386
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 acgacctccaggagatcttctccg 170 ||||||||||||||||| |||||| Sbjct: 1409723 acgacctccaggagatcatctccg 1409700
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ccgctccgcagacgccgccg 215 |||||||||||||||||||| Sbjct: 3977587 ccgctccgcagacgccgccg 3977568
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 tcgcctcccccgcctcctccctcc 293 |||| ||||||||||||||||||| Sbjct: 117645 tcgcttcccccgcctcctccctcc 117668 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 tcgcctcccccgcctcctccctcc 293 |||| ||||||||||||||||||| Sbjct: 9372 tcgcttcccccgcctcctccctcc 9349
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gtccccgctcgtcgacgcgc 109 |||||||||||||||||||| Sbjct: 668832 gtccccgctcgtcgacgcgc 668851
>gb|AY609581.1| Sus scrofa clone Clu_198385.scr.msk.p1.Contig2, mRNA sequence Length = 622 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 tcgcctcccccgcctcctccctcc 293 |||||||||||||| ||||||||| Sbjct: 118 tcgcctcccccgccgcctccctcc 141
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 cgctgcggctgctgcagctg 361 |||||||||||||||||||| Sbjct: 1720147 cgctgcggctgctgcagctg 1720128
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 acgacctccaggagatcttctccg 170 ||||||||||||||||| |||||| Sbjct: 1086718 acgacctccaggagatcatctccg 1086695
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gagcaggtccaccagatgct 243 |||||||||||||||||||| Sbjct: 795786 gagcaggtccaccagatgct 795767 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,053,885 Number of Sequences: 3902068 Number of extensions: 3053885 Number of successful extensions: 73713 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72314 Number of HSP's gapped (non-prelim): 1396 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)