ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast70f10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550012.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1990 Score = 420 bits (212), Expect = e-114 Identities = 299/328 (91%) Strand = Plus / Minus Query: 1 caacgcctccgggaagacagcccgtctcggcttcaacaccatcgccaccagcgccgtgca 60 |||||||||||| |||| || || ||||||||||||||||||||||||||||| ||| Sbjct: 1170 caacgcctccggccagacggcgcggctcggcttcaacaccatcgccaccagcgcgacgca 1111 Query: 61 ctacaatggcatcctggagtacaatgcccacagcttgtatggcttctcccaggccatcgc 120 ||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| Sbjct: 1110 ctacaatggcatcctggagtacaatgcgcacagcctgtatggattctcgcaggccatcgc 1051 Query: 121 cactcacaaggggctgcaaagcatccaggggaagaggccgttcatcctgacgcgatccac 180 || ||| ||| |||||| | ||||||| ||| ||||||||||||||||||| || || Sbjct: 1050 gacgcaccaggcgctgcaggggctccagggcaagcggccgttcatcctgacgcgctctac 991 Query: 181 gttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 240 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 990 gttcgtcgggtcgggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 931 Query: 241 ggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 300 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 930 gaatctccgctactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 871 Query: 301 cggcgccgacatctgcgggttctacccg 328 |||||||||||||||||||||||||||| Sbjct: 870 cggcgccgacatctgcgggttctacccg 843 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 346 ggaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggacca 405 ||||||||| |||| ||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 834 ggaggagctctgcaaccggtggatcgagctcggcgcgttctacccgttctccagggacca 775 Query: 406 cgccaacttcgcctcggcgaggcaggagctgta 438 ||||||||||| ||| |||||||||||||||| Sbjct: 774 tgccaacttcgcgtcgccgaggcaggagctgta 742
>ref|NM_184232.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3193 Score = 420 bits (212), Expect = e-114 Identities = 299/328 (91%) Strand = Plus / Plus Query: 1 caacgcctccgggaagacagcccgtctcggcttcaacaccatcgccaccagcgccgtgca 60 |||||||||||| |||| || || ||||||||||||||||||||||||||||| ||| Sbjct: 1738 caacgcctccggccagacggcgcggctcggcttcaacaccatcgccaccagcgcgacgca 1797 Query: 61 ctacaatggcatcctggagtacaatgcccacagcttgtatggcttctcccaggccatcgc 120 ||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| Sbjct: 1798 ctacaatggcatcctggagtacaatgcgcacagcctgtatggattctcgcaggccatcgc 1857 Query: 121 cactcacaaggggctgcaaagcatccaggggaagaggccgttcatcctgacgcgatccac 180 || ||| ||| |||||| | ||||||| ||| ||||||||||||||||||| || || Sbjct: 1858 gacgcaccaggcgctgcaggggctccagggcaagcggccgttcatcctgacgcgctctac 1917 Query: 181 gttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 240 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1918 gttcgtcgggtcgggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 1977 Query: 241 ggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 300 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1978 gaatctccgctactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 2037 Query: 301 cggcgccgacatctgcgggttctacccg 328 |||||||||||||||||||||||||||| Sbjct: 2038 cggcgccgacatctgcgggttctacccg 2065 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Plus Query: 346 ggaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggacca 405 ||||||||| |||| ||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 2074 ggaggagctctgcaaccggtggatcgagctcggcgcgttctacccgttctccagggacca 2133 Query: 406 cgccaacttcgcctcggcgaggcaggagctgta 438 ||||||||||| ||| |||||||||||||||| Sbjct: 2134 tgccaacttcgcgtcgccgaggcaggagctgta 2166
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 420 bits (212), Expect = e-114 Identities = 299/328 (91%) Strand = Plus / Plus Query: 1 caacgcctccgggaagacagcccgtctcggcttcaacaccatcgccaccagcgccgtgca 60 |||||||||||| |||| || || ||||||||||||||||||||||||||||| ||| Sbjct: 1700343 caacgcctccggccagacggcgcggctcggcttcaacaccatcgccaccagcgcgacgca 1700402 Query: 61 ctacaatggcatcctggagtacaatgcccacagcttgtatggcttctcccaggccatcgc 120 ||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| Sbjct: 1700403 ctacaatggcatcctggagtacaatgcgcacagcctgtatggattctcgcaggccatcgc 1700462 Query: 121 cactcacaaggggctgcaaagcatccaggggaagaggccgttcatcctgacgcgatccac 180 || ||| ||| |||||| | ||||||| ||| ||||||||||||||||||| || || Sbjct: 1700463 gacgcaccaggcgctgcaggggctccagggcaagcggccgttcatcctgacgcgctctac 1700522 Query: 181 gttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 240 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1700523 gttcgtcgggtcgggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 1700582 Query: 241 ggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 300 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1700583 gaatctccgctactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 1700642 Query: 301 cggcgccgacatctgcgggttctacccg 328 |||||||||||||||||||||||||||| Sbjct: 1700643 cggcgccgacatctgcgggttctacccg 1700670 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Plus Query: 346 ggaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggacca 405 ||||||||| |||| ||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 1700679 ggaggagctctgcaaccggtggatcgagctcggcgcgttctacccgttctccagggacca 1700738 Query: 406 cgccaacttcgcctcggcgaggcaggagctgta 438 ||||||||||| ||| |||||||||||||||| Sbjct: 1700739 tgccaacttcgcgtcgccgaggcaggagctgta 1700771
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 420 bits (212), Expect = e-114 Identities = 299/328 (91%) Strand = Plus / Plus Query: 1 caacgcctccgggaagacagcccgtctcggcttcaacaccatcgccaccagcgccgtgca 60 |||||||||||| |||| || || ||||||||||||||||||||||||||||| ||| Sbjct: 42686 caacgcctccggccagacggcgcggctcggcttcaacaccatcgccaccagcgcgacgca 42745 Query: 61 ctacaatggcatcctggagtacaatgcccacagcttgtatggcttctcccaggccatcgc 120 ||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| Sbjct: 42746 ctacaatggcatcctggagtacaatgcgcacagcctgtatggattctcgcaggccatcgc 42805 Query: 121 cactcacaaggggctgcaaagcatccaggggaagaggccgttcatcctgacgcgatccac 180 || ||| ||| |||||| | ||||||| ||| ||||||||||||||||||| || || Sbjct: 42806 gacgcaccaggcgctgcaggggctccagggcaagcggccgttcatcctgacgcgctctac 42865 Query: 181 gttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 240 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42866 gttcgtcgggtcgggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 42925 Query: 241 ggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 300 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42926 gaatctccgctactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 42985 Query: 301 cggcgccgacatctgcgggttctacccg 328 |||||||||||||||||||||||||||| Sbjct: 42986 cggcgccgacatctgcgggttctacccg 43013 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Plus Query: 346 ggaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggacca 405 ||||||||| |||| ||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 43022 ggaggagctctgcaaccggtggatcgagctcggcgcgttctacccgttctccagggacca 43081 Query: 406 cgccaacttcgcctcggcgaggcaggagctgta 438 ||||||||||| ||| |||||||||||||||| Sbjct: 43082 tgccaacttcgcgtcgccgaggcaggagctgta 43114
>dbj|AK110956.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-A07, full insert sequence Length = 1990 Score = 420 bits (212), Expect = e-114 Identities = 299/328 (91%) Strand = Plus / Minus Query: 1 caacgcctccgggaagacagcccgtctcggcttcaacaccatcgccaccagcgccgtgca 60 |||||||||||| |||| || || ||||||||||||||||||||||||||||| ||| Sbjct: 1170 caacgcctccggccagacggcgcggctcggcttcaacaccatcgccaccagcgcgacgca 1111 Query: 61 ctacaatggcatcctggagtacaatgcccacagcttgtatggcttctcccaggccatcgc 120 ||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| Sbjct: 1110 ctacaatggcatcctggagtacaatgcgcacagcctgtatggattctcgcaggccatcgc 1051 Query: 121 cactcacaaggggctgcaaagcatccaggggaagaggccgttcatcctgacgcgatccac 180 || ||| ||| |||||| | ||||||| ||| ||||||||||||||||||| || || Sbjct: 1050 gacgcaccaggcgctgcaggggctccagggcaagcggccgttcatcctgacgcgctctac 991 Query: 181 gttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 240 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 990 gttcgtcgggtcgggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 931 Query: 241 ggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 300 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 930 gaatctccgctactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 871 Query: 301 cggcgccgacatctgcgggttctacccg 328 |||||||||||||||||||||||||||| Sbjct: 870 cggcgccgacatctgcgggttctacccg 843 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 346 ggaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggacca 405 ||||||||| |||| ||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 834 ggaggagctctgcaaccggtggatcgagctcggcgcgttctacccgttctccagggacca 775 Query: 406 cgccaacttcgcctcggcgaggcaggagctgta 438 ||||||||||| ||| |||||||||||||||| Sbjct: 774 tgccaacttcgcgtcgccgaggcaggagctgta 742
>dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B18, full insert sequence Length = 3486 Score = 420 bits (212), Expect = e-114 Identities = 299/328 (91%) Strand = Plus / Plus Query: 1 caacgcctccgggaagacagcccgtctcggcttcaacaccatcgccaccagcgccgtgca 60 |||||||||||| |||| || || ||||||||||||||||||||||||||||| ||| Sbjct: 1739 caacgcctccggccagacggcgcggctcggcttcaacaccatcgccaccagcgcgacgca 1798 Query: 61 ctacaatggcatcctggagtacaatgcccacagcttgtatggcttctcccaggccatcgc 120 ||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| Sbjct: 1799 ctacaatggcatcctggagtacaatgcgcacagcctgtatggattctcgcaggccatcgc 1858 Query: 121 cactcacaaggggctgcaaagcatccaggggaagaggccgttcatcctgacgcgatccac 180 || ||| ||| |||||| | ||||||| ||| ||||||||||||||||||| || || Sbjct: 1859 gacgcaccaggcgctgcaggggctccagggcaagcggccgttcatcctgacgcgctctac 1918 Query: 181 gttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 240 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1919 gttcgtcgggtcgggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 1978 Query: 241 ggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 300 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1979 gaatctccgctactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 2038 Query: 301 cggcgccgacatctgcgggttctacccg 328 |||||||||||||||||||||||||||| Sbjct: 2039 cggcgccgacatctgcgggttctacccg 2066 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Plus Query: 346 ggaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggacca 405 ||||||||| |||| ||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 2075 ggaggagctctgcaaccggtggatcgagctcggcgcgttctacccgttctccagggacca 2134 Query: 406 cgccaacttcgcctcggcgaggcaggagctgta 438 ||||||||||| ||| |||||||||||||||| Sbjct: 2135 tgccaacttcgcgtcgccgaggcaggagctgta 2167
>dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A04, full insert sequence Length = 3193 Score = 420 bits (212), Expect = e-114 Identities = 299/328 (91%) Strand = Plus / Plus Query: 1 caacgcctccgggaagacagcccgtctcggcttcaacaccatcgccaccagcgccgtgca 60 |||||||||||| |||| || || ||||||||||||||||||||||||||||| ||| Sbjct: 1738 caacgcctccggccagacggcgcggctcggcttcaacaccatcgccaccagcgcgacgca 1797 Query: 61 ctacaatggcatcctggagtacaatgcccacagcttgtatggcttctcccaggccatcgc 120 ||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| Sbjct: 1798 ctacaatggcatcctggagtacaatgcgcacagcctgtatggattctcgcaggccatcgc 1857 Query: 121 cactcacaaggggctgcaaagcatccaggggaagaggccgttcatcctgacgcgatccac 180 || ||| ||| |||||| | ||||||| ||| ||||||||||||||||||| || || Sbjct: 1858 gacgcaccaggcgctgcaggggctccagggcaagcggccgttcatcctgacgcgctctac 1917 Query: 181 gttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 240 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1918 gttcgtcgggtcgggcgcctacgccgcgcactggaccggcgacaacaagggcacctggga 1977 Query: 241 ggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 300 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1978 gaatctccgctactccatctccaccatgctcaacttcggcatcttcggcatgccgatggt 2037 Query: 301 cggcgccgacatctgcgggttctacccg 328 |||||||||||||||||||||||||||| Sbjct: 2038 cggcgccgacatctgcgggttctacccg 2065 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Plus Query: 346 ggaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggacca 405 ||||||||| |||| ||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 2074 ggaggagctctgcaaccggtggatcgagctcggcgcgttctacccgttctccagggacca 2133 Query: 406 cgccaacttcgcctcggcgaggcaggagctgta 438 ||||||||||| ||| |||||||||||||||| Sbjct: 2134 tgccaacttcgcgtcgccgaggcaggagctgta 2166
>gb|AY109891.1| Zea mays CL53767_1 mRNA sequence Length = 812 Score = 258 bits (130), Expect = 1e-65 Identities = 263/309 (85%) Strand = Plus / Plus Query: 20 gcccgtctcggcttcaacaccatcgccaccagcgccgtgcactacaatggcatcctggag 79 ||||| |||||||||||||||||||| |||||||| |||||||| |||||||||||| Sbjct: 6 gcccgactcggcttcaacaccatcgcaaccagcgctacacactacaacggcatcctggag 65 Query: 80 tacaatgcccacagcttgtatggcttctcccaggccatcgccactcacaaggggctgcaa 139 |||||||| ||||| ||||||||||||| |||||||| ||||| || | || ||||||| Sbjct: 66 tacaatgcgcacagtctgtatggcttctcgcaggccattgccacgcatacggcgctgcaa 125 Query: 140 agcatccaggggaagaggccgttcatcctgacgcgatccacgttcgtcggctccggcgcc 199 | | ||||||||||||||| |||||||||| || |||||||||||||| || | Sbjct: 126 gggctgcaggggaagaggccggtcatcctgacccgctccacgttcgtcgggtcnnnnncg 185 Query: 200 tacgccgcgcactggaccggcgacaacaagggcacctgggaggacctccggtactccatc 259 || ||||||||||||||||| || ||||||||||| ||||| | ||||| ||||| ||| Sbjct: 186 tatgccgcgcactggaccggagataacaagggcacgtgggaaaatctccgttactcgatc 245 Query: 260 tccaccatgctcaacttcggcatcttcggcatgccgatggtcggcgccgacatctgcggg 319 || |||||||||||||| ||||||||||||||||| ||||| ||| | ||||||||||| Sbjct: 246 tcaaccatgctcaactttggcatcttcggcatgcccatggttggctctgacatctgcggt 305 Query: 320 ttctacccg 328 ||||||||| Sbjct: 306 ttctacccg 314 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 363 ggtggatcgagctcggtgcattctacccgttctcaagggaccacgccaacttcgcctcgg 422 ||||||| |||||||| || |||||||| ||||| |||||||| ||||||||||| || Sbjct: 340 ggtggattgagctcggggccttctaccccttctccagggaccatgccaacttcgcgtcac 399 Query: 423 cgaggcaggagctgta 438 |||||||||||||||| Sbjct: 400 cgaggcaggagctgta 415
>gb|BT019289.1| Zea mays clone Contig962.F mRNA sequence Length = 1946 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Minus Query: 176 tccacgttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacc 235 ||||||||||| || |||||| ||| ||||||||||||||||||||||| | ||| Sbjct: 1188 tccacgttcgtggggtccggccggtacaccgcgcactggaccggcgacaacgccgccacg 1129 Query: 236 tgggaggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccg 295 ||||| |||||||| ||||||||| ||||||||||| ||||||| |||||||||| || Sbjct: 1128 tgggacgacctccgctactccatcaacaccatgctcagcttcggcctcttcggcattccc 1069 Query: 296 atggtcggcgccgacatctgcgg 318 ||||||||||| ||||||||||| Sbjct: 1068 atggtcggcgctgacatctgcgg 1046 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 347 gaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggacca 405 |||||||| ||||| || |||||| |||| || || |||||||||||| |||||||||| Sbjct: 1026 gaggagctctgcagccgctggatccagcttggcgcgttctacccgttcgcaagggacca 968
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Minus Query: 176 tccacgttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacc 235 ||||||||||||||||||||| ||| |||| |||||||||||||||||| | || Sbjct: 27663077 tccacgttcgtcggctccggcaggtacaccgctcactggaccggcgacaacgccgcgacg 27663018 Query: 236 tgggaggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccg 295 ||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||| || Sbjct: 27663017 tgggaggacctccactactccatcaacaccatgctcagcttcggcctcttcggcatcccc 27662958 Query: 296 atggtcggcgccgacatctgcgg 318 ||| ||||||||||||||||||| Sbjct: 27662957 atgatcggcgccgacatctgcgg 27662935 Score = 109 bits (55), Expect = 8e-21 Identities = 121/143 (84%) Strand = Plus / Plus Query: 176 tccacgttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacc 235 ||||||||||||||||||||| ||| ||||||||||||||||||||||| | || Sbjct: 27720960 tccacgttcgtcggctccggcaggtacaccgcgcactggaccggcgacaacttcgcgacg 27721019 Query: 236 tgggaggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccg 295 ||||| |||||||| ||||||||| ||| ||||| | ||||||| |||||||||| || Sbjct: 27721020 tgggacgacctccgctactccatcaacactatgcttagcttcggcctcttcggcatcccc 27721079 Query: 296 atggtcggcgccgacatctgcgg 318 ||| |||| |||||||||||||| Sbjct: 27721080 atgatcggtgccgacatctgcgg 27721102 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 ttctacccgttctcaagggaccac 406 |||||||||||||| ||||||||| Sbjct: 27721234 ttctacccgttctcgagggaccac 27721257
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1153E06 Length = 174588 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Minus Query: 176 tccacgttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacc 235 ||||||||||||||||||||| ||| |||| |||||||||||||||||| | || Sbjct: 12332 tccacgttcgtcggctccggcaggtacaccgctcactggaccggcgacaacgccgcgacg 12273 Query: 236 tgggaggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccg 295 ||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||| || Sbjct: 12272 tgggaggacctccactactccatcaacaccatgctcagcttcggcctcttcggcatcccc 12213 Query: 296 atggtcggcgccgacatctgcgg 318 ||| ||||||||||||||||||| Sbjct: 12212 atgatcggcgccgacatctgcgg 12190 Score = 109 bits (55), Expect = 8e-21 Identities = 121/143 (84%) Strand = Plus / Plus Query: 176 tccacgttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacc 235 ||||||||||||||||||||| ||| ||||||||||||||||||||||| | || Sbjct: 70215 tccacgttcgtcggctccggcaggtacaccgcgcactggaccggcgacaacttcgcgacg 70274 Query: 236 tgggaggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccg 295 ||||| |||||||| ||||||||| ||| ||||| | ||||||| |||||||||| || Sbjct: 70275 tgggacgacctccgctactccatcaacactatgcttagcttcggcctcttcggcatcccc 70334 Query: 296 atggtcggcgccgacatctgcgg 318 ||| |||| |||||||||||||| Sbjct: 70335 atgatcggtgccgacatctgcgg 70357 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 ttctacccgttctcaagggaccac 406 |||||||||||||| ||||||||| Sbjct: 70489 ttctacccgttctcgagggaccac 70512
>dbj|AK119824.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D07, full insert sequence Length = 2829 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 176 tccacgttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacc 235 ||||||||||||||||||||| ||| |||| |||||||||||||||||| | || Sbjct: 1654 tccacgttcgtcggctccggcaggtacaccgctcactggaccggcgacaacgccgcgacg 1713 Query: 236 tgggaggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccg 295 ||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||| || Sbjct: 1714 tgggaggacctccactactccatcaacaccatgctcagcttcggcctcttcggcatcccc 1773 Query: 296 atggtcggcgccgacatctgcgg 318 ||| ||||||||||||||||||| Sbjct: 1774 atgatcggcgccgacatctgcgg 1796 Score = 40.1 bits (20), Expect = 6.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 347 gaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaaggga 402 |||||||| ||||| || ||||| |||| || || |||||||||||||| ||||| Sbjct: 1816 gaggagctctgcagccgctggattcagcttggcgcgttctacccgttctcgaggga 1871
>gb|AF448201.1| Pinus pinaster putative alpha-xylosidase (XYL1) mRNA, complete cds Length = 2881 Score = 109 bits (55), Expect = 8e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 206 gcgcactggaccggcgacaacaagggcacctgggaggacctccggtactccatctccacc 265 ||||||||||| || |||||||| | ||| |||||||| ||||| ||||| ||||| ||| Sbjct: 1666 gcgcactggacgggagacaacaaagccacttgggaggatctccgctactcaatctcgacc 1725 Query: 266 atgctcaacttcggcatcttcggcatgccgatggtcggcgccgacatctgcgggttcta 324 || |||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct: 1726 atactcaacttcggcatgttcgggatgcccatggtgggcgctgacatctgcggcttcta 1784 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 32 ttcaacaccatcgccaccagcgccgtgcactacaatggcatcctggagtacaatgcccac 91 ||||| ||||||||||||||| |||| |||||||| ||| |||| |||||| | |||||| Sbjct: 1492 ttcaagaccatcgccaccagctccgtccactacaacggcgtcctcgagtacgacgcccac 1551 Query: 92 agcttgtatggcttctcccaggccatcgccactcacaagg 131 ||| | |||||||| || |||||||||||||| ||||||| Sbjct: 1552 agcctctatggcttatcgcaggccatcgccacgcacaagg 1591
>gb|AF118226.1|AF118226 Hordeum vulgare high pI alpha-glucosidase (AGL97) gene, complete cds Length = 7113 Score = 109 bits (55), Expect = 8e-21 Identities = 121/143 (84%) Strand = Plus / Plus Query: 176 tccacgttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacc 235 ||||| ||||||||||||||| ||| |||| |||||||| ||||||||| | ||| Sbjct: 6037 tccaccttcgtcggctccggccggtacaccgctcactggactggcgacaacgccgccacg 6096 Query: 236 tgggaggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccg 295 |||| ||||| || ||||||||| ||||||||||| ||||||| ||||||||||||| Sbjct: 6097 tggggcgacctgcgctactccatcaacaccatgctcagcttcggcctcttcggcatgccc 6156 Query: 296 atggtcggcgccgacatctgcgg 318 ||| ||||||||||||||||||| Sbjct: 6157 atgatcggcgccgacatctgcgg 6179 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 347 gaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggaccac 406 |||||||| ||| ||||||||||| ||||||| || |||||||| ||||| ||||||||| Sbjct: 6199 gaggagctctgcggtcggtggatccagctcggcgccttctaccccttctcgagggaccac 6258
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710B08 Length = 186991 Score = 109 bits (55), Expect = 8e-21 Identities = 121/143 (84%) Strand = Plus / Plus Query: 176 tccacgttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacc 235 ||||||||||||||||||||| ||| ||||||||||||||||||||||| | || Sbjct: 23469 tccacgttcgtcggctccggcaggtacaccgcgcactggaccggcgacaacttcgcgacg 23528 Query: 236 tgggaggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccg 295 ||||| |||||||| ||||||||| ||| ||||| | ||||||| |||||||||| || Sbjct: 23529 tgggacgacctccgctactccatcaacactatgcttagcttcggcctcttcggcatcccc 23588 Query: 296 atggtcggcgccgacatctgcgg 318 ||| |||| |||||||||||||| Sbjct: 23589 atgatcggtgccgacatctgcgg 23611 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 ttctacccgttctcaagggaccac 406 |||||||||||||| ||||||||| Sbjct: 23743 ttctacccgttctcgagggaccac 23766
>dbj|AK121588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037N10, full insert sequence Length = 2804 Score = 109 bits (55), Expect = 8e-21 Identities = 121/143 (84%) Strand = Plus / Plus Query: 176 tccacgttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacc 235 ||||||||||||||||||||| ||| ||||||||||||||||||||||| | || Sbjct: 1632 tccacgttcgtcggctccggcaggtacaccgcgcactggaccggcgacaacttcgcgacg 1691 Query: 236 tgggaggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccg 295 ||||| |||||||| ||||||||| ||| ||||| | ||||||| |||||||||| || Sbjct: 1692 tgggacgacctccgctactccatcaacactatgcttagcttcggcctcttcggcatcccc 1751 Query: 296 atggtcggcgccgacatctgcgg 318 ||| |||| |||||||||||||| Sbjct: 1752 atgatcggtgccgacatctgcgg 1774 Score = 48.1 bits (24), Expect = 0.025 Identities = 51/60 (85%) Strand = Plus / Plus Query: 347 gaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggaccac 406 |||||||| ||||| || ||||| |||| || || |||||||||||||| ||||||||| Sbjct: 1794 gaggagctctgcagccgatggattcagcttggcgcgttctacccgttctcgagggaccac 1853
>dbj|AK105449.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B12, full insert sequence Length = 2873 Score = 109 bits (55), Expect = 8e-21 Identities = 121/143 (84%) Strand = Plus / Plus Query: 176 tccacgttcgtcggctccggcgcctacgccgcgcactggaccggcgacaacaagggcacc 235 ||||||||||||||||||||| ||| ||||||||||||||||||||||| | || Sbjct: 1700 tccacgttcgtcggctccggcaggtacaccgcgcactggaccggcgacaacttcgcgacg 1759 Query: 236 tgggaggacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccg 295 ||||| |||||||| ||||||||| ||| ||||| | ||||||| |||||||||| || Sbjct: 1760 tgggacgacctccgctactccatcaacactatgcttagcttcggcctcttcggcatcccc 1819 Query: 296 atggtcggcgccgacatctgcgg 318 ||| |||| |||||||||||||| Sbjct: 1820 atgatcggtgccgacatctgcgg 1842 Score = 48.1 bits (24), Expect = 0.025 Identities = 51/60 (85%) Strand = Plus / Plus Query: 347 gaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggaccac 406 |||||||| ||||| || ||||| |||| || || |||||||||||||| ||||||||| Sbjct: 1862 gaggagctctgcagccgatggattcagcttggcgcgttctacccgttctcgagggaccac 1921
>gb|U22450.1|HVU22450 Hordeum vulgare alpha-glucosidase mRNA, complete cds Length = 2738 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 242 gacctccggtactccatctccaccatgctcaacttcggcatcttcggcatgccgatggtc 301 ||||| || ||||||||| ||||||||||| ||||||| ||||||||||||| ||| || Sbjct: 1662 gacctgcgctactccatcaacaccatgctcagcttcggcctcttcggcatgcccatgatc 1721 Query: 302 ggcgccgacatctgcgggttc 322 ||||||||||||||||||||| Sbjct: 1722 ggcgccgacatctgcgggttc 1742 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 347 gaggagctgtgcagtcggtggatcgagctcggtgcattctacccgttctcaagggaccac 406 |||||||| ||| ||||||||||| ||||||| || |||||||| ||||| ||||||||| Sbjct: 1758 gaggagctctgcggtcggtggatccagctcggagccttctaccccttctcgagggaccac 1817
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 289 catgccgatggtcggcgccgaca 311 ||||||||||||||||||||||| Sbjct: 901388 catgccgatggtcggcgccgaca 901410
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 408 ccaacttcgcctcggcgaggca 429 |||||||||||||||||||||| Sbjct: 11607369 ccaacttcgcctcggcgaggca 11607390
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1120F06 Length = 186712 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 408 ccaacttcgcctcggcgaggca 429 |||||||||||||||||||||| Sbjct: 171027 ccaacttcgcctcggcgaggca 171048
>dbj|AP006479.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1272H04 Length = 87113 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 408 ccaacttcgcctcggcgaggca 429 |||||||||||||||||||||| Sbjct: 52741 ccaacttcgcctcggcgaggca 52762
>dbj|AK121178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083G22, full insert sequence Length = 3866 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 408 ccaacttcgcctcggcgaggca 429 |||||||||||||||||||||| Sbjct: 109 ccaacttcgcctcggcgaggca 130
>dbj|AK073416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040D17, full insert sequence Length = 3852 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 408 ccaacttcgcctcggcgaggca 429 |||||||||||||||||||||| Sbjct: 109 ccaacttcgcctcggcgaggca 130
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 187 cggctccggcgcctacgccgcgcac 211 |||| |||||||||||||||||||| Sbjct: 2564269 cggcgccggcgcctacgccgcgcac 2564245 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ccgccgctggaggagctgtg 357 |||||||||||||||||||| Sbjct: 3359149 ccgccgctggaggagctgtg 3359168
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 gcttctcccaggccatcgcca 122 ||||||||||||||||||||| Sbjct: 567456 gcttctcccaggccatcgcca 567476
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 cttcggcatgccgatggtcg 302 |||||||||||||||||||| Sbjct: 1947843 cttcggcatgccgatggtcg 1947824
>gb|AY532606.1| Rock bream iridovirus strain RBIV-KOR-TY1 from South Korea, complete genome Length = 112080 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cggccaagccaccgccgctg 346 |||||||||||||||||||| Sbjct: 82016 cggccaagccaccgccgctg 81997
>ref|XM_362264.1| Magnaporthe grisea 70-15 hypothetical protein (MG04709.4) partial cds Length = 4515 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gctcaacttcggcatcttcg 287 |||||||||||||||||||| Sbjct: 2740 gctcaacttcggcatcttcg 2721
>ref|XM_451809.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B06116g predicted mRNA Length = 3156 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 ctcaacttcggcatcttcgg 288 |||||||||||||||||||| Sbjct: 2139 ctcaacttcggcatcttcgg 2158
>gb|AY894343.1| Orange-spotted grouper iridovirus, complete genome Length = 112636 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cggccaagccaccgccgctg 346 |||||||||||||||||||| Sbjct: 82396 cggccaagccaccgccgctg 82377
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1320834 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 ctcaacttcggcatcttcgg 288 |||||||||||||||||||| Sbjct: 545157 ctcaacttcggcatcttcgg 545176
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tcggcatcttcggcatgccg 295 |||||||||||||||||||| Sbjct: 64739 tcggcatcttcggcatgccg 64758
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cggctccggcgcctacgccg 206 |||||||||||||||||||| Sbjct: 5029558 cggctccggcgcctacgccg 5029577
>ref|XM_574839.1| PREDICTED: Rattus norvegicus hexosaminidase B (predicted) (Hexb_predicted), mRNA Length = 1677 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 acaccatcgccaccagcgcc 55 |||||||||||||||||||| Sbjct: 61 acaccatcgccaccagcgcc 42
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 ggcgcctacgccgcgcactggacc 217 ||||||| |||||||||||||||| Sbjct: 7625633 ggcgcctgcgccgcgcactggacc 7625610 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 tcaacaccatcgccaccagcgccg 56 |||||||||| ||||||||||||| Sbjct: 5412208 tcaacaccatggccaccagcgccg 5412185
>emb|Y00407.1|GGCALB Chicken conalbumin (ovotransferrin) gene and flanking regions Length = 11068 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gggcacctgggaggacctcc 248 |||||||||||||||||||| Sbjct: 1519 gggcacctgggaggacctcc 1500
>gb|BC079376.1| Rattus norvegicus hexosaminidase B, mRNA (cDNA clone MGC:94872 IMAGE:7110247), complete cds Length = 1907 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 acaccatcgccaccagcgcc 55 |||||||||||||||||||| Sbjct: 135 acaccatcgccaccagcgcc 116
>ref|NM_001011946.1| Rattus norvegicus hexosaminidase B (Hexb), mRNA Length = 1907 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 acaccatcgccaccagcgcc 55 |||||||||||||||||||| Sbjct: 135 acaccatcgccaccagcgcc 116
>gb|M12898.1|RABATPAA Rabbit Ca2+ ATPase mRNA, complete cds Length = 3317 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 accggcgacaacaagggcac 234 |||||||||||||||||||| Sbjct: 1954 accggcgacaacaagggcac 1973 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,756,683 Number of Sequences: 3902068 Number of extensions: 2756683 Number of successful extensions: 56858 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56231 Number of HSP's gapped (non-prelim): 617 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
