Clone Information

BLAST Search Result

Clone Name	bast70e12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YIPF5_MACFA (Q4R5M4) Protein YIPF5 (YIP1 domain family member 5)	43	3e-04
2	YIPF5_BRARE (Q6P5I8) Protein YIPF5 (YIP1 domain family member 5)	42	6e-04
3	YIPF5_PONPY (Q5R6W5) Protein YIPF5 (YIP1 domain family member 5)	42	7e-04
4	YIPF5_MOUSE (Q9EQQ2) Protein YIPF5 (YIP1 domain family member 5)...	42	7e-04
5	YIPF5_HUMAN (Q969M3) Protein YIPF5 (YIP1 domain family member 5)...	42	7e-04
6	YIPF5_BOVIN (Q5E9E8) Protein YIPF5 (YIP1 domain family member 5)	42	7e-04
7	YIPF5_XENTR (Q66KA5) Protein YIPF5 (YIP1 domain family member 5)	42	7e-04
8	YIPF5_XENLA (Q7SXS2) Protein YIPF5 (YIP1 domain family member 5)	42	7e-04
9	YIPF5_RAT (Q5XID0) Protein YIPF5 (YIP1 domain family member 5) (...	41	0.001
10	CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)	36	0.041
11	PRR3_PIG (Q767L1) Proline-rich protein 3 (MHC class I region pro...	34	0.16
12	CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)	34	0.16
13	CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)	33	0.35
14	GDF6_HUMAN (Q6KF10) Growth/differentiation factor 6 precursor (G...	32	0.45
15	FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)	32	0.45
16	PRR3_PANTR (Q7YR36) Proline-rich protein 3 (MHC class I region p...	31	1.0
17	PRR3_HUMAN (P79522) Proline-rich protein 3 (MHC class I region p...	31	1.0
18	SYN3_RAT (O70441) Synapsin-3 (Synapsin III)	31	1.3
19	SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)	31	1.3
20	SPEG_RAT (Q63638) Striated muscle-specific serine/threonine prot...	30	1.7
21	PRR3_MOUSE (Q811B5) Proline-rich protein 3 (MHC class I region p...	30	2.3
22	IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2	30	2.3
23	SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr...	30	2.9
24	TINF2_MOUSE (Q9QXG9) TERF1-interacting nuclear factor 2 (TRF1-in...	30	2.9
25	COBB_RHOCA (O68108) Cobyrinic acid A,C-diamide synthase	30	2.9
26	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	29	3.8
27	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	29	3.8
28	PRR3_RAT (Q6MG07) Proline-rich protein 3 (MHC class I region pro...	29	3.8
29	MECP2_MOUSE (Q9Z2D6) Methyl-CpG-binding protein 2 (MeCP-2 protei...	29	3.8
30	TBC16_HUMAN (Q8TBP0) TBC1 domain family member 16	29	3.8
31	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	29	5.0
32	GDF6_BOVIN (P55106) Growth/differentiation factor 6 precursor (G...	29	5.0
33	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	29	5.0
34	INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)	29	5.0
35	PRLB_ACHLY (P27458) Beta-lytic metalloendopeptidase precursor (E...	28	6.6
36	MYSC_ACACA (P10569) Myosin IC heavy chain	28	6.6
37	IF2_GLOVI (Q7NH85) Translation initiation factor IF-2	28	6.6
38	PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precur...	28	6.6
39	POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)	28	6.6
40	POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)	28	6.6
41	PLMN_MACMU (P12545) Plasminogen precursor (EC 3.4.21.7) [Contain...	28	6.6
42	NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Si...	28	6.6
43	BSN_MOUSE (O88737) Bassoon protein	28	8.6
44	OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)	28	8.6
45	BSN_RAT (O88778) Bassoon protein	28	8.6
46	SYM_RICPR (Q9ZCP0) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...	28	8.6
47	SYM_RICCN (Q92GS6) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...	28	8.6
48	ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 prot...	28	8.6
49	DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)	28	8.6

>YIPF5_MACFA (Q4R5M4) Protein YIPF5 (YIP1 domain family member 5)|
          Length = 257

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +1

Query: 346 GASFEDEPPLLEELGINTRQIWRK 417
           G SFEDEPPLLEELGIN   IW+K
Sbjct: 83  GNSFEDEPPLLEELGINFDHIWQK 106

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>YIPF5_BRARE (Q6P5I8) Protein YIPF5 (YIP1 domain family member 5)|
          Length = 257

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 22/36 (61%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 316 PIFTGPIGGS--GASFEDEPPLLEELGINTRQIWRK 417
           P FT     S   +SFEDEPPLLEELGIN   IW+K
Sbjct: 71  PAFTPTSSQSMYSSSFEDEPPLLEELGINFDHIWQK 106

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>YIPF5_PONPY (Q5R6W5) Protein YIPF5 (YIP1 domain family member 5)|
          Length = 257

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +1

Query: 346 GASFEDEPPLLEELGINTRQIWRK 417
           G +FEDEPPLLEELGIN   IW+K
Sbjct: 83  GNNFEDEPPLLEELGINFDHIWQK 106

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>YIPF5_MOUSE (Q9EQQ2) Protein YIPF5 (YIP1 domain family member 5)|
           (YPT-interacting protein 1 A)
          Length = 257

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 21/35 (60%), Positives = 23/35 (65%)
 Frame = +1

Query: 313 PPIFTGPIGGSGASFEDEPPLLEELGINTRQIWRK 417
           PP    P  G   SFE+EPPLLEELGIN   IW+K
Sbjct: 74  PPTTPQPFYGD--SFEEEPPLLEELGINFDHIWQK 106

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>YIPF5_HUMAN (Q969M3) Protein YIPF5 (YIP1 domain family member 5)|
           (YPT-interacting protein 1 A) (Five-pass transmembrane
           protein localizing in the Golgi apparatus and the
           endoplasmic reticulum 5) (Smooth muscle cell-associated
           protein 5) (SMAP-5)
          Length = 257

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +1

Query: 346 GASFEDEPPLLEELGINTRQIWRK 417
           G +FEDEPPLLEELGIN   IW+K
Sbjct: 83  GNNFEDEPPLLEELGINFDHIWQK 106

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>YIPF5_BOVIN (Q5E9E8) Protein YIPF5 (YIP1 domain family member 5)|
          Length = 257

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +1

Query: 346 GASFEDEPPLLEELGINTRQIWRK 417
           G +FEDEPPLLEELGIN   IW+K
Sbjct: 83  GNNFEDEPPLLEELGINFDHIWQK 106

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>YIPF5_XENTR (Q66KA5) Protein YIPF5 (YIP1 domain family member 5)|
          Length = 256

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +1

Query: 346 GASFEDEPPLLEELGINTRQIWRK 417
           G++F+DEPPLLEELGIN   IW+K
Sbjct: 82  GSTFDDEPPLLEELGINFDHIWQK 105

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>YIPF5_XENLA (Q7SXS2) Protein YIPF5 (YIP1 domain family member 5)|
          Length = 256

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +1

Query: 346 GASFEDEPPLLEELGINTRQIWRK 417
           G++F+DEPPLLEELGIN   IW+K
Sbjct: 82  GSTFDDEPPLLEELGINFDHIWQK 105

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>YIPF5_RAT (Q5XID0) Protein YIPF5 (YIP1 domain family member 5)|
           (YPT-interacting protein 1 A)
          Length = 257

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +1

Query: 346 GASFEDEPPLLEELGINTRQIWRK 417
           G SFE+EPPLLEELGIN   IW+K
Sbjct: 83  GDSFEEEPPLLEELGINFDHIWQK 106

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>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 12   SPIPLLSFPPPRRGQNPTPRSSQ--LPRSRNPRGRRGHGEGAPVFP 143
            SP P+L+ P P+   +PTP S +  LP   +P  +R HG   PV P
Sbjct: 1227 SPKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEVKRAHGTPPPVSP 1272

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>PRR3_PIG (Q767L1) Proline-rich protein 3 (MHC class I region proline-rich|
           protein CAT56) (Fragment)
          Length = 131

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 23/45 (51%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 21  PLLSFPPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGA-PVFPATG 152
           PLLS PPP RG+ P  R    PRS  P GR   G  A P FP  G
Sbjct: 15  PLLSLPPPPRGRGPL-RGGLGPRS-GPYGRGWWGVNAEPPFPGPG 57

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>CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 12   SPIPLLSFPPPRRGQNPTPRSSQ--LPRSRNPRGRRGHGEGAPVFP 143
            SP P+LS P  +   +PTP S +  LP   +P  +R HG   PV P
Sbjct: 1229 SPKPILSQPVSKIQGSPTPASKKVPLPGPGSPEVKRAHGTPPPVSP 1274

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>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)|
          Length = 1430

 Score = 32.7 bits (73), Expect = 0.35
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 12   SPIPLLSFPPPRRGQNPTPRSSQ--LPRSRNPRGRRGHGEGAPVFP 143
            SP P+L+ P  +   +PTP S +  LP   +P  +R HG   PV P
Sbjct: 1228 SPKPILAQPVSKIQGSPTPASKKVPLPGPGSPEVKRAHGTPPPVSP 1273

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>GDF6_HUMAN (Q6KF10) Growth/differentiation factor 6 precursor (GDF-6)|
           (Growth/differentiation factor 16)
          Length = 455

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 45  RRGQNPTPRSSQLPRSRNPRGRRGHGEGAPVFP 143
           R GQ P PR    PR++ PR +   G G  V P
Sbjct: 62  REGQEPQPRPQDEPRAQQPRAQEPPGRGPRVVP 94

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>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)|
          Length = 694

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +3

Query: 6   TASPIPLLSFPPPRRGQNPTPRS--SQLPRSRNPR---GRRGHGEGAPVFPATGG 155
           TA+P P    PPP  G+ P   S   + P +R P    GR G G  A   PA GG
Sbjct: 158 TAAPSPPRRLPPPPPGEQPPSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARGG 212

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>PRR3_PANTR (Q7YR36) Proline-rich protein 3 (MHC class I region proline-rich|
           protein CAT56)
          Length = 188

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 21  PLLSFPPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGA-PVFPATG 152
           PLLS PPP  G+ P  R    PRS +P GR   G  A P FP  G
Sbjct: 72  PLLSLPPPPWGRGPIRRGLG-PRS-SPYGRGWWGVNAEPPFPGPG 114

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>PRR3_HUMAN (P79522) Proline-rich protein 3 (MHC class I region proline-rich|
           protein CAT56)
          Length = 188

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 21  PLLSFPPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGA-PVFPATG 152
           PLLS PPP  G+ P  R    PRS +P GR   G  A P FP  G
Sbjct: 72  PLLSLPPPPWGRGPIRRGLG-PRS-SPYGRGWWGVNAEPPFPGPG 114

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>SYN3_RAT (O70441) Synapsin-3 (Synapsin III)|
          Length = 579

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 21  PLLSFPPPRRGQNPTPR---SSQLPRSRNPRGRRGHGEG-APVFPATGGLQ 161
           PLL  P PR      PR   S Q PRSR+P  +R   +G  PV P +G  Q
Sbjct: 426 PLLGQPQPRPPPQGGPRQAQSPQPPRSRSPSQQRLSPQGQQPVSPQSGSPQ 476

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>SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)|
          Length = 579

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 21  PLLSFPPPRRGQNPTPR---SSQLPRSRNPRGRRGHGEG-APVFPATGGLQ 161
           PLL  P PR      PR   S Q PRSR+P  +R   +G  PV P +G  Q
Sbjct: 426 PLLGQPQPRPPPQGGPRQAQSPQPPRSRSPSQQRLSPQGQQPVSPQSGSPQ 476

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>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3259

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 21  PLLSFPPPRRGQNPTPRSSQLPRSRNPRGRRGHGEG 128
           P  + PPP  G   +   +  PRSR P GR   GEG
Sbjct: 555 PAATQPPPPSGAGKSGDETGRPRSRGPVGRTEPGEG 590

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>PRR3_MOUSE (Q811B5) Proline-rich protein 3 (MHC class I region proline-rich|
           protein CAT56)
          Length = 190

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 21  PLLSFPPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGA-PVFPATG 152
           PLLS PPP RG+    R    PRS +P GR   G  A P FP  G
Sbjct: 74  PLLSLPPPPRGRGYI-RGGLGPRS-SPYGRGWWGINAEPPFPGPG 116

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>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2|
          Length = 924

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 15/65 (23%)
 Frame = +3

Query: 15  PIPLLSFPPPRRGQNP---------------TPRSSQLPRSRNPRGRRGHGEGAPVFPAT 149
           P P     PPR G NP                PR S  P S +PR     G G P  P T
Sbjct: 166 PAPKPGGRPPRVGNNPFSSAQSVARPIPRPPAPRPSASPSSMSPRPGGAVGGGGPRPPRT 225

Query: 150 GGLQP 164
           G  +P
Sbjct: 226 GVPRP 230

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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3262

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 21  PLLSFPPPRRGQNPTPRSSQLPRSRNPRGRRGHGEG 128
           P  + PPP  G   +      PRSR P GR   GEG
Sbjct: 555 PAATQPPPPSGAGKSGDEPGRPRSRGPVGRTEPGEG 590

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>TINF2_MOUSE (Q9QXG9) TERF1-interacting nuclear factor 2 (TRF1-interacting|
           nuclear protein 2)
          Length = 341

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 268 LPFMSFDIPAQSNSTPPIFTGPIGGSGASFEDEPPLLEELGINTRQIWRK 417
           LPF +  +PAQ  S P     P   S AS   EP   EE    +R + ++
Sbjct: 275 LPFRNMGLPAQDLSNPKSREEPGAASAASVGTEPVCTEEAKTPSRPLGKR 324

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>COBB_RHOCA (O68108) Cobyrinic acid A,C-diamide synthase|
          Length = 435

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 366 LVFEGGTGAADGPGEDGRRGVGLS 295
           ++FEG  G  DGP + GR G G S
Sbjct: 86  VIFEGAMGLYDGPADPGRSGRGTS 109

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>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 19/42 (45%), Positives = 20/42 (47%)
 Frame = +3

Query: 30  SFPPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGAPVFPATGG 155
           SF   RRG  P PRS   PR    RG RG   G    P+ GG
Sbjct: 88  SFESGRRGPPPPPRSRGPPRGL--RGGRGGSGGTRGPPSRGG 127



 Score = 28.1 bits (61), Expect = 8.6
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 3   ATASPIPLLSFPPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGAPV 137
           ++  P+P+   PPPR G  P  RS+    S   R   G G  APV
Sbjct: 142 SSRGPLPVKRGPPPRSGGPPPKRSAP---SGPVRSSSGMGGRAPV 183

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +3

Query: 12  SPIPLLSFPPPRRGQNPTP-----RSSQLPRSRNPRGRR 113
           +P P    PPPRR ++PTP       S  PR R+P  RR
Sbjct: 576 APPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRR 614

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>PRR3_RAT (Q6MG07) Proline-rich protein 3 (MHC class I region proline-rich|
           protein CAT56)
          Length = 186

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 21  PLLSFPPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGA-PVFPATG 152
           PLLS PPP RG+    R    PRS +P GR   G    P FP  G
Sbjct: 70  PLLSLPPPPRGRGHI-RGGLGPRS-SPYGRGWWGVNTEPPFPGPG 112

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>MECP2_MOUSE (Q9Z2D6) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 484

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 15/63 (23%)
 Frame = +3

Query: 3   ATASPIPLLSFPPPRRGQNPTPRSSQLPRS---------------RNPRGRRGHGEGAPV 137
           +T +P+PLL  PPP     P P SS+ P S               + PRG     +G P 
Sbjct: 375 STKAPMPLLPSPPP-----PEPESSEDPISPPEPQDLSSSICKEEKMPRGGSLESDGCPK 429

Query: 138 FPA 146
            PA
Sbjct: 430 EPA 432

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>TBC16_HUMAN (Q8TBP0) TBC1 domain family member 16|
          Length = 767

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 63  TPRSSQLPRSRNPRGRRGHGEGAPVFPATGGLQPLHT 173
           TP SS + ++  PRGRR    GA   P+   L+P  T
Sbjct: 99  TPESSPVRKAPRPRGRRTRSSGASHQPSPTELRPTLT 135

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 12  SPIPLLSFPPPRRGQNPTP-----RSSQLPRSRNPRGRR 113
           SP P    PPPRR + PTP       S  PR R+P  RR
Sbjct: 574 SPSPA---PPPRRRRTPTPPPRRRTPSPPPRRRSPSPRR 609

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>GDF6_BOVIN (P55106) Growth/differentiation factor 6 precursor (GDF-6)|
           (Cartilage-derived morphogenetic protein 2) (CDMP-2)
           (Fragment)
          Length = 436

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 36  PPPRRGQNPTPRSSQLPRSRNPRGR 110
           PPPR  + P  R  Q P +R P GR
Sbjct: 39  PPPRPQEEPQRRPPQQPEAREPPGR 63

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 12  SPIPLLSFPPPRRGQNPTP-----RSSQLPRSRNPRGRR 113
           SP P    PPPRR + PTP       S  PR R+P  RR
Sbjct: 560 SPSPA---PPPRRRRTPTPPPRRRTPSPPPRRRSPSPRR 595

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>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 9/126 (7%)
 Frame = +1

Query: 22  LSSPFLLLAEAKTQLPDLANYPDLGTLAVAAAMAKEPPFSLPPV----VFNPSTPA---- 177
           L++P    A   T + +  N  +   L  A +++ +PP   PP     + NP TP+    
Sbjct: 122 LATPAPFAASPPTSIANANNTNNNNALGAAGSLSSQPP-PPPPTGPRSILNPPTPSQQHQ 180

Query: 178 HRRHXXXXXXXXXXXXXXXXXXXXXXXXXXLPFMSFDIPAQSNSTPPIFTGPIGGS-GAS 354
            + H                           P      PA ++ + P+  G IG S   S
Sbjct: 181 QQHHHPNPFVAASAPSLPPPPSSLQAPPAITPIAGLSAPAPASGSLPLSAGGIGNSITVS 240

Query: 355 FEDEPP 372
              +PP
Sbjct: 241 SSSQPP 246

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>PRLB_ACHLY (P27458) Beta-lytic metalloendopeptidase precursor (EC 3.4.24.32)|
           (Beta-lytic protease)
          Length = 374

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 179 WAGVEGLKTTGGRENGGSFAMAAATARVPRSG*LARSGSWVLASARRRKGEERNRGCGS 3
           WAG  G+  +  R +G     AA  A  P +  + RS SW   +A  R+       C S
Sbjct: 68  WAGYSGISRSVDRADG-----AAERAVTPSARRIVRSASWRAPTASARRPARSRWRCAS 121

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>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +3

Query: 36   PPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGAPVFPATGGLQP 164
            PPP  G  P       P     RGR G G   P   A GG+ P
Sbjct: 1114 PPPGAGGPPGGGRGGAPPPGGMRGRGGPGPAPPGGMARGGMMP 1156

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>IF2_GLOVI (Q7NH85) Translation initiation factor IF-2|
          Length = 925

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
 Frame = +3

Query: 9   ASPIPLLSFPPPRRGQNPTPRSSQLPRSRNPRGR---RGHGEGAP-VFPATGGLQP 164
           A P P    P P     PT      PR   P  +   R    G P + P  GGLQP
Sbjct: 222 APPAPAKPTPAPAPAPRPTAEQPSEPRRPQPPAQPPSRPEKRGGPLIAPNRGGLQP 277

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>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary|
           proline-rich protein) [Contains: Basic peptide IB-6;
           Peptide P-H]
          Length = 392

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 36  PPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGAPVFPATGGLQP 164
           PPP + Q P P+     +SR+P+   G  +G    P  GG QP
Sbjct: 255 PPPGKPQGPPPQGD---KSRSPQSPPGKPQGP---PPQGGNQP 291



 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 36  PPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGAPVFPATGGLQP 164
           PPP + Q P P+     +S++PR   G  +G    P  GG QP
Sbjct: 194 PPPGKPQGPPPQGD---KSQSPRSPPGKPQGP---PPQGGNQP 230



 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 36  PPPRRGQNPTPRSSQLPRSRNPRGRRGHGEGAPVFPATGGLQP 164
           PPP + Q P P+     +S++PR   G  +G    P  GG QP
Sbjct: 133 PPPGKPQGPPPQGD---KSQSPRSPPGKPQGP---PPQGGNQP 169

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>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 36  PPPRRGQNPTPRSSQL-PRSRNPRGRRGHGEGAPVFPATGGLQPLHT 173
           PPP R  + TP +  L P   +PR         P  PAT  L+P HT
Sbjct: 650 PPPIRSPDMTPSAPVLFPEINSPR------RFPPQLPATPDLEPAHT 690

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>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 36  PPPRRGQNPTPRSSQL-PRSRNPRGRRGHGEGAPVFPATGGLQPLHT 173
           PPP R  + TP +  L P   +PR         P  PAT  L+P HT
Sbjct: 650 PPPIRSPDMTPSAPVLFPEINSPR------RFPPQLPATPDLEPAHT 690

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>PLMN_MACMU (P12545) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin|
           heavy chain A; Activation peptide; Plasmin heavy chain
           A, short form; Plasmin light chain B]
          Length = 810

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 143 CHRWSSTPPHQPT 181
           C +WSST PH+PT
Sbjct: 124 CQKWSSTSPHRPT 136

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>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC)
          Length = 2472

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +3

Query: 12  SPIPLLSFPPPR---RGQNPTPRSSQLPRSRNPRGR 110
           SP P    P PR      N  PR  QLPR R PR R
Sbjct: 801 SPEPSHHLPHPRLLWTRMNKKPRLLQLPRQRMPRSR 836

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>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 3   ATASPIPLLSFPPPRRGQ-NPTPRSSQLPRSRNPRGRRGHGEGAPVFPATGGL 158
           AT+ P P  +  PP  G+ +P P  S  P +  PR   G  +G        GL
Sbjct: 281 ATSVPGPTQATAPPEVGRVSPQPPLSTKPSTAEPRPPAGEAQGKSATTVPSGL 333

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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 39  PPRRGQNPTPRSSQLPRSRNPRGRRGHGEGAPVFPATGGLQPLHTS 176
           PP    N  P +S  P+S+  +G +  G+GA   P +GG  P H S
Sbjct: 815 PPHGPTNMGPPTSTPPQSQMLQGGQPQGQGASGGPESGG--PEHIS 858

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>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 3   ATASPIPLLSFPPPRRGQ-NPTPRSSQLPRSRNPRGRRGHGEGAPVFPATGGL 158
           AT+ P P  +  PP  G+ +P P  S  P +  PR   G  +G        GL
Sbjct: 280 ATSVPGPTQATAPPEVGRVSPQPPLSTKPSTAEPRPPAGEAQGKSATTVPSGL 332

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>SYM_RICPR (Q9ZCP0) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 508

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 136 TGAPSPWPRRPRGFRDLGSWLDRGVGFW 53
           TGAP  W + P  F +L  W D+ + F+
Sbjct: 147 TGAPVEWVKEPSYFFNLAKWQDKLLEFY 174

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>SYM_RICCN (Q92GS6) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 508

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 136 TGAPSPWPRRPRGFRDLGSWLDRGVGFW 53
           TGAP  W + P  F +L  W D+ + F+
Sbjct: 147 TGAPVEWVKEPSYFFNLSKWQDKLLEFY 174

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>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
           (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 9   ASPIPLLSFPPPRRGQNPTP-RSSQLPRSRNPRGRRGHGEGA 131
           A+P P  S  PP  G  P P R S  P + +  G  G+G GA
Sbjct: 45  AAPGPYPSAAPPPPGPGPPPSRQSSPPSASDCFGSNGNGGGA 86

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>DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)|
          Length = 830

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 15  PIPLLSFPPPRRGQNPTPRSSQLPRSRNPRGRRG--HGEGAPVFPATGGLQP 164
           P+P+  + P   G +P PR +  P    P GR+      G P  P   G++P
Sbjct: 750 PLPMSDYRPHPSGPSPVPRPAPAP----PGGRQAPMPPRGGPGAPPPPGMRP 797


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,711,263
Number of Sequences: 219361
Number of extensions: 820545
Number of successful extensions: 4912
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 4018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4876
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result