ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast70e10 |
|---|---|
| Clone Library Name | barley_pub |
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 32.0 bits (71), Expect = 0.37 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -3 Query: 355 LPAGPAREETLATQTAKRYLRGDEPSVATKPAAMPRLGETRTRLASVGS-QGLVSLPAGK 179 LPAG AREE +T TA ++ + A PA P G+ A+ GS G++S PA + Sbjct: 2304 LPAGVAREEPFST-TAPAVIKEAPVAPAPGPAPAPPPGQKPAGEAAAGSGSGVLSRPASE 2362 Query: 178 E 176 + Sbjct: 2363 K 2363
>MED12_HUMAN (Q93074) Mediator of RNA polymerase II transcription subunit 12| (Thyroid hormone receptor-associated protein complex 230 kDa component) (Trap230) (Activator-recruited cofactor 240 kDa component) (ARC240) (CAG repeat protein 45) (OPA-containin Length = 2212 Score = 31.2 bits (69), Expect = 0.63 Identities = 22/67 (32%), Positives = 30/67 (44%) Frame = -3 Query: 379 PCAYHMMVLPAGPAREETLATQTAKRYLRGDEPSVATKPAAMPRLGETRTRLASVGSQGL 200 P AY++ LP P EE A + + EP KP A P E R + ++ G + Sbjct: 1769 PRAYYLEPLPLPPEDEEPPAPTLLEPEKKAPEPPKTDKPGAAPPSTEERKKKSTKGKKR- 1827 Query: 199 VSLPAGK 179 S PA K Sbjct: 1828 -SQPATK 1833
>RPOC_STAAW (P60286) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 192 NDTRPWLPTEASRVLVSPSRGMAAGFVATEGS-SPRKY 302 N+TR +L + SR++V + + G V TEGS P+ Y Sbjct: 1001 NETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNY 1038
>RPOC_STAAS (Q6GBU4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 192 NDTRPWLPTEASRVLVSPSRGMAAGFVATEGS-SPRKY 302 N+TR +L + SR++V + + G V TEGS P+ Y Sbjct: 1001 NETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNY 1038
>RPOC_STAAR (Q6GJC5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 192 NDTRPWLPTEASRVLVSPSRGMAAGFVATEGS-SPRKY 302 N+TR +L + SR++V + + G V TEGS P+ Y Sbjct: 1001 NETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNY 1038
>RPOC_STAAN (P60285) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 192 NDTRPWLPTEASRVLVSPSRGMAAGFVATEGS-SPRKY 302 N+TR +L + SR++V + + G V TEGS P+ Y Sbjct: 1001 NETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNY 1038
>RPOC_STAAM (P60284) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 192 NDTRPWLPTEASRVLVSPSRGMAAGFVATEGS-SPRKY 302 N+TR +L + SR++V + + G V TEGS P+ Y Sbjct: 1001 NETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNY 1038
>RPOC_STAAC (Q5HID2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 192 NDTRPWLPTEASRVLVSPSRGMAAGFVATEGS-SPRKY 302 N+TR +L + SR++V + + G V TEGS P+ Y Sbjct: 1001 NETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNY 1038
>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1) Length = 814 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Frame = -3 Query: 391 PSESPCAYHMMVLPAGPAREETLATQTAKRYL----RGDEPSVATKPAA 257 P+ P ++ PAGP E T+ + + G EP V T+PAA Sbjct: 24 PAAEPPPAEGLLRPAGPGAPEAAGTEASSEEVGIAEAGPEPEVRTEPAA 72
>RPOC_STAAU (P47770) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1140 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 192 NDTRPWLPTEASRVLVSPSRGMAAGFVATEGS-SPRKY 302 N+TR +L + SR++V + + G V TEGS P+ Y Sbjct: 1001 NETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNY 1038
>SYFB_METCA (Q60AY9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 791 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 376 CAYHMMVLPAGPAREETLATQTAKRYLRGDEPSV 275 CA+ L G AR LAT ++ R+ RG +PS+ Sbjct: 335 CAFFAPALIMGKARRYGLATDSSHRFERGVDPSL 368
>RPOC_STAHJ (Q4L3K4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +3 Query: 192 NDTRPWLPTEASRVLVSPSRGMAAGFVATEGSSPRKYRFAV 314 N+TR +L + SR+ V + + G V TEGS K AV Sbjct: 1001 NETRSYLASGTSRLKVEVGQSVERGEVLTEGSIEPKNFLAV 1041
>RPOC_STAES (Q8CQ83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +3 Query: 192 NDTRPWLPTEASRVLVSPSRGMAAGFVATEGS-SPRKY 302 N+TR +L + SR+ V + + G V TEGS P+ Y Sbjct: 1001 NETRSYLASGTSRLKVEIGQSVERGEVLTEGSIEPKNY 1038
>RPOC_STAEQ (Q5HRK9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +3 Query: 192 NDTRPWLPTEASRVLVSPSRGMAAGFVATEGS-SPRKY 302 N+TR +L + SR+ V + + G V TEGS P+ Y Sbjct: 1001 NETRSYLASGTSRLKVEIGQSVERGEVLTEGSIEPKNY 1038
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -3 Query: 355 LPAGPAREETLATQTAKRYLRGDEPSVATKPAAMPRLGETRTRLASVGS-QGLVSLP 188 LPAG AREE L+T ++ E VA PA P G+ A+ GS G++ P Sbjct: 2293 LPAGGAREEPLSTTAPPAVIK--EAPVAQAPAPPP--GQKPAGDAAAGSGSGVLGRP 2345
>DHBD_ASPOR (P80402) 2,3-dihydroxybenzoic acid decarboxylase (EC 4.1.1.46)| (DHBD) (o-pyrocatechuate decarboxylase) (2,3-DHBA decarboxylase) Length = 338 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 297 KYRFAVWVANVSSRAGPAGKTIIWYAHGDSD 389 KY F + N + RAGP G +I+Y + D D Sbjct: 121 KYGFKGALVNDTQRAGPDGDDMIFYDNADWD 151 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,823,469 Number of Sequences: 219361 Number of extensions: 438458 Number of successful extensions: 1735 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1735 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
