ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast70e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswel... 42 1.3
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
3gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.3
4dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
5gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43... 42 1.3
6ref|XM_426688.1| PREDICTED: Gallus gallus similar to CDNA sequen... 40 5.3
7gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 5.3
8emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.3
9ref|NM_009293.1| Mus musculus steroid sulfatase (Sts), mRNA 40 5.3
10emb|BX932975.1| Gallus gallus finished cDNA, clone ChEST38b17 40 5.3
11gb|U37545.1|MMU37545 Mus musculus steroid sulfatase (Sts) mRNA, ... 40 5.3

>gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 186990

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    ccagccgcagtcggtcggcag 63
             |||||||||||||||||||||
Sbjct: 18642 ccagccgcagtcggtcggcag 18622



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 32       atccatccattccagccgcag 52
                |||||||||||||||||||||
Sbjct: 26196185 atccatccattccagccgcag 26196165



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 303     cgcttcgccgtctgggtcgcc 323
               |||||||||||||||||||||
Sbjct: 4375811 cgcttcgccgtctgggtcgcc 4375791



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>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0453H04
          Length = 175047

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    atccatccattccagccgcag 52
             |||||||||||||||||||||
Sbjct: 60725 atccatccattccagccgcag 60705



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>gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43 of 83 of the complete
              sequence
          Length = 303022

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     ccagccgcagtcggtcggcag 63
              |||||||||||||||||||||
Sbjct: 168474 ccagccgcagtcggtcggcag 168494



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>ref|XM_426688.1| PREDICTED: Gallus gallus similar to CDNA sequence BC026799
            (LOC429132), mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 253  gcatggccgccggcttcgtggcga 276
            ||||||||||| ||||||||||||
Sbjct: 1033 gcatggccgcccgcttcgtggcga 1010



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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 10      gtactcgacttccaccagat 29
               ||||||||||||||||||||
Sbjct: 4743473 gtactcgacttccaccagat 4743454



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 245     gagccgcggcatggccgccggctt 268
               |||||||||||||| |||||||||
Sbjct: 4292189 gagccgcggcatgggcgccggctt 4292212



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>ref|NM_009293.1| Mus musculus steroid sulfatase (Sts), mRNA
          Length = 2283

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 252 ggcatggccgccggcttcgtggcgacgg 279
           |||||||||| ||||| |||||||||||
Sbjct: 260 ggcatggccggcggctgcgtggcgacgg 233



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>emb|BX932975.1| Gallus gallus finished cDNA, clone ChEST38b17
          Length = 813

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 253 gcatggccgccggcttcgtggcga 276
           ||||||||||| ||||||||||||
Sbjct: 453 gcatggccgcccgcttcgtggcga 430



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>gb|U37545.1|MMU37545 Mus musculus steroid sulfatase (Sts) mRNA, complete cds
          Length = 2283

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 252 ggcatggccgccggcttcgtggcgacgg 279
           |||||||||| ||||| |||||||||||
Sbjct: 260 ggcatggccggcggctgcgtggcgacgg 233


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,478,235
Number of Sequences: 3902068
Number of extensions: 2478235
Number of successful extensions: 57165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56902
Number of HSP's gapped (non-prelim): 263
length of query: 393
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 371
effective length of database: 17,147,199,772
effective search space: 6361611115412
effective search space used: 6361611115412
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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